RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 KRTAP10-7P60409 375 aaPredicted RBP2.89□□□□□ -1.95
USP4-211ENST00000485450 KRTAP2-2Q9BYT5 123 aa2.89□□□□□ -1.95
USP4-211ENST00000485450 NEBP20929 6669 aa2.85□□□□□ -1.95
USP4-211ENST00000485450 KRTAP12-3P60328 96 aa2.85□□□□□ -1.95
USP4-211ENST00000485450 LCE1AQ5T7P2 110 aa2.84□□□□□ -1.95
USP4-211ENST00000485450 KRTAP19-7Q3SYF9 63 aa2.81□□□□□ -1.96
USP4-211ENST00000485450 SYNE2Q8WXH0 6885 aaKnown RBP2.8□□□□□ -1.96
USP4-211ENST00000485450 MUC12Q9UKN1 5478 aa2.77□□□□□ -1.97
USP4-211ENST00000485450 KRTAP4-8A0A0G2JLE6 195 aa2.77□□□□□ -1.97
USP4-211ENST00000485450 KRTAP4-8Q9BYQ9 185 aa2.77□□□□□ -1.97
USP4-211ENST00000485450 MT1EP04732 61 aa2.76□□□□□ -1.97
USP4-211ENST00000485450 KMT2DO14686 5537 aa2.76□□□□□ -1.97
USP4-211ENST00000485450 KRTAP4-12Q9BQ66 201 aa2.75□□□□□ -1.97
USP4-211ENST00000485450 KRTAP2-3P0C7H8 128 aa2.74□□□□□ -1.97
USP4-211ENST00000485450 KRTAP2-4Q9BYR9 128 aa2.74□□□□□ -1.97
USP4-211ENST00000485450 KRTAP2-1Q9BYU5 128 aa2.74□□□□□ -1.97
USP4-211ENST00000485450 LCE1FQ5T754 118 aa2.73□□□□□ -1.97
USP4-211ENST00000485450 LCE3CQ5T5A8 94 aa2.72□□□□□ -1.97
USP4-211ENST00000485450 KRTAP9-6A8MVA2 160 aa2.71□□□□□ -1.98
USP4-211ENST00000485450 MDN1Q9NU22 5596 aa2.71□□□□□ -1.98
USP4-211ENST00000485450 LOC100996750A0A140TA64 210 aa2.68□□□□□ -1.98
USP4-211ENST00000485450 KRTAP19-3Q7Z4W3 81 aa2.68□□□□□ -1.98
USP4-211ENST00000485450 SPRR2FQ96RM1 72 aa2.68□□□□□ -1.98
USP4-211ENST00000485450 KRTAP4-6Q9BYQ5 205 aa2.68□□□□□ -1.98
USP4-211ENST00000485450 SPRR2EP22531 72 aa2.65□□□□□ -1.98
USP4-211ENST00000485450 SPRR2BP35325 72 aa2.65□□□□□ -1.98
USP4-211ENST00000485450 SPRR2AP35326 72 aa2.65□□□□□ -1.98
USP4-211ENST00000485450 MT1LQ93083 61 aa2.65□□□□□ -1.99
USP4-211ENST00000485450 KRTAP20-1Q3LI63 56 aa2.65□□□□□ -1.99
USP4-211ENST00000485450 KRTAP19-5Q3LI72 72 aa2.64□□□□□ -1.99
USP4-211ENST00000485450 MT1GP13640 62 aa2.64□□□□□ -1.99
USP4-211ENST00000485450 MT3P25713 68 aa2.61□□□□□ -1.99
USP4-211ENST00000485450 MT1MQ8N339 61 aa2.59□□□□□ -1.99
USP4-211ENST00000485450 KRTAP5-4Q6L8H1 288 aa2.58□□□□□ -2
USP4-211ENST00000485450 SPRR2DP22532 72 aa2.58□□□□□ -2
USP4-211ENST00000485450 KRTAP5-5Q701N2 237 aaPredicted RBP2.56□□□□□ -2
USP4-211ENST00000485450 LCE3BQ5TA77 95 aa2.55□□□□□ -2
USP4-211ENST00000485450 LCE1EQ5T753 118 aa2.48□□□□□ -2.01
USP4-211ENST00000485450 KRTAP12-4P60329 112 aa2.46□□□□□ -2.02
USP4-211ENST00000485450 KRTAP4-7Q9BYR0 210 aa2.45□□□□□ -2.02
USP4-211ENST00000485450 LCE1DQ5T752 114 aa2.38□□□□□ -2.03
USP4-211ENST00000485450 KRTAP4-3Q9BYR4 195 aa2.38□□□□□ -2.03
USP4-211ENST00000485450 LCE3EQ5T5B0 92 aa2.32□□□□□ -2.04
USP4-211ENST00000485450 KRTAP5-2Q701N4 177 aa2.32□□□□□ -2.04
USP4-211ENST00000485450 KRTAP5-3Q6L8H2 238 aa2.31□□□□□ -2.04
USP4-211ENST00000485450 MT1AP04731 61 aa2.28□□□□□ -2.04
USP4-211ENST00000485450 HMCN1Q96RW7 5635 aa2.28□□□□□ -2.04
USP4-211ENST00000485450 PRM1P04553 51 aa2.28□□□□□ -2.05
USP4-211ENST00000485450 KRTAP20-2Q3LI61 65 aa2.27□□□□□ -2.05
USP4-211ENST00000485450 KRTAP4-11Q9BYQ6 195 aa2.27□□□□□ -2.05
USP4-211ENST00000485450 KRTAP4-9Q9BYQ8 210 aa2.26□□□□□ -2.05
USP4-211ENST00000485450 KRTAP5-10Q6L8G5 202 aa2.22□□□□□ -2.05
USP4-211ENST00000485450 AHNAK2Q8IVF2 5795 aa2.2□□□□□ -2.06
USP4-211ENST00000485450 KRTAP6-1Q3LI64 71 aa2.18□□□□□ -2.06
USP4-211ENST00000485450 SYNE1Q8NF91 8797 aaKnown RBP2.18□□□□□ -2.06
USP4-211ENST00000485450 LCE3DQ9BYE3 92 aa2.17□□□□□ -2.06
USP4-211ENST00000485450 KRTAP5-7Q6L8G8 165 aa2.16□□□□□ -2.06
USP4-211ENST00000485450 KRTAP4-2Q9BYR5 136 aa2.14□□□□□ -2.07
USP4-211ENST00000485450 MT4P47944 62 aa2.13□□□□□ -2.07
USP4-211ENST00000485450 DSTQ03001 7570 aaKnown RBP2.11□□□□□ -2.07
USP4-211ENST00000485450 OBSCNQ5VST9 7968 aa2.07□□□□□ -2.08
USP4-211ENST00000485450 KRTAP6-2Q3LI66 62 aa2.05□□□□□ -2.08
USP4-211ENST00000485450 KRTAP5-8O75690 187 aa2.02□□□□□ -2.09
USP4-211ENST00000485450 KRTAP5-1Q6L8H4 278 aa1.97□□□□□ -2.09
USP4-211ENST00000485450 GPR98Q8WXG9 6306 aa1.94□□□□□ -2.1
USP4-211ENST00000485450 MUC19Q7Z5P9 8384 aa1.89□□□□□ -2.11
USP4-211ENST00000485450 MUC5BQ9HC84 5762 aaPredicted RBP1.86□□□□□ -2.11
USP4-211ENST00000485450 MUC5ACP98088 5654 aa1.84□□□□□ -2.12
USP4-211ENST00000485450 LCE1CQ5T751 118 aa1.83□□□□□ -2.12
USP4-211ENST00000485450 LCE1BQ5T7P3 118 aa1.83□□□□□ -2.12
USP4-211ENST00000485450 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.8□□□□□ -2.12
USP4-211ENST00000485450 AHNAKQ09666 5890 aaKnown RBP1.78□□□□□ -2.12
USP4-211ENST00000485450 KRTAP5-11Q6L8G4 156 aa1.66□□□□□ -2.14
USP4-211ENST00000485450 KRTAP21-1Q3LI58 79 aa1.55□□□□□ -2.16
USP4-211ENST00000485450 KRTAP21-2Q3LI59 83 aa1.54□□□□□ -2.16
USP4-211ENST00000485450 PHGR1C9JFL3 82 aa1.41□□□□□ -2.18
USP4-211ENST00000485450 KRTAP4-4Q9BYR3 166 aa1.17□□□□□ -2.22
USP4-211ENST00000485450 MUC16Q8WXI7 14507 aa0.98□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 26.4 ms