RNA–Protein interactions for RNA: ENST00000483882.1

NR1H3-222, Transcript of nuclear receptor subfamily 1 group H member 3, human

TSL 2

Gene NR1H3, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1H3-222	ENST00000483882	KRTAP10-12	P60413	245 aa		5.92	□□□□□ -1.46
NR1H3-222	ENST00000483882	C10orf95	Q9H7T3	257 aa		5.85	□□□□□ -1.47
NR1H3-222	ENST00000483882	LCE3B	Q5TA77	95 aa		5.82	□□□□□ -1.48
NR1H3-222	ENST00000483882	KRTAP25-1	Q3LHN0	102 aa		5.81	□□□□□ -1.48
NR1H3-222	ENST00000483882	TNP1	P09430	55 aa		5.66	□□□□□ -1.5
NR1H3-222	ENST00000483882	KRTAP19-7	Q3SYF9	63 aa		5.59	□□□□□ -1.51
NR1H3-222	ENST00000483882	PP632	Q6XCG6	107 aa		5.58	□□□□□ -1.52
NR1H3-222	ENST00000483882	KRTAP23-1	A1A580	65 aa		5.55	□□□□□ -1.52
NR1H3-222	ENST00000483882	LCE3A	Q5TA76	89 aa		5.55	□□□□□ -1.52
NR1H3-222	ENST00000483882	GPR98	Q8WXG9	6306 aa		5.53	□□□□□ -1.52
NR1H3-222	ENST00000483882	KRTAP19-5	Q3LI72	72 aa		5.51	□□□□□ -1.53
NR1H3-222	ENST00000483882	MT1E	P04732	61 aa		5.5	□□□□□ -1.53
NR1H3-222	ENST00000483882	LCE5A	Q5TCM9	118 aa		5.49	□□□□□ -1.53
NR1H3-222	ENST00000483882	KRTAP4-9	Q9BYQ8	210 aa		5.48	□□□□□ -1.53
NR1H3-222	ENST00000483882	DST	Q03001	7570 aa	Known RBP	5.47	□□□□□ -1.53
NR1H3-222	ENST00000483882	KRTAP19-3	Q7Z4W3	81 aa		5.46	□□□□□ -1.54
NR1H3-222	ENST00000483882	MT1L	Q93083	61 aa		5.32	□□□□□ -1.56
NR1H3-222	ENST00000483882	KRTAP12-3	P60328	96 aa		5.31	□□□□□ -1.56
NR1H3-222	ENST00000483882	LCE1D	Q5T752	114 aa		5.31	□□□□□ -1.56
NR1H3-222	ENST00000483882	MT1G	P13640	62 aa		5.3	□□□□□ -1.56
NR1H3-222	ENST00000483882	MT4	P47944	62 aa		5.25	□□□□□ -1.57
NR1H3-222	ENST00000483882	LCE4A	Q5TA78	99 aa		5.24	□□□□□ -1.57
NR1H3-222	ENST00000483882	MT1M	Q8N339	61 aa		5.22	□□□□□ -1.57
NR1H3-222	ENST00000483882	HMCN1	Q96RW7	5635 aa		5.15	□□□□□ -1.58
NR1H3-222	ENST00000483882	KRTAP15-1	Q3LI76	137 aa		5.15	□□□□□ -1.59
NR1H3-222	ENST00000483882	KRTAP4-3	Q9BYR4	195 aa		5.13	□□□□□ -1.59
NR1H3-222	ENST00000483882	KRTAP4-7	Q9BYR0	210 aa		5.12	□□□□□ -1.59
NR1H3-222	ENST00000483882	KRTAP5-4	Q6L8H1	288 aa		5.07	□□□□□ -1.6
NR1H3-222	ENST00000483882	KRTAP4-6	Q9BYQ5	205 aa		5.05	□□□□□ -1.6
NR1H3-222	ENST00000483882	AHNAK2	Q8IVF2	5795 aa		5.05	□□□□□ -1.6
NR1H3-222	ENST00000483882	KRTAP5-10	Q6L8G5	202 aa		5.03	□□□□□ -1.6
NR1H3-222	ENST00000483882	SPRR5	A0A1B0GTR4	108 aa		4.98	□□□□□ -1.61
NR1H3-222	ENST00000483882	KRTAP19-4	Q3LI73	84 aa		4.97	□□□□□ -1.61
NR1H3-222	ENST00000483882	LCE3C	Q5T5A8	94 aa		4.93	□□□□□ -1.62
NR1H3-222	ENST00000483882	KRTAP5-3	Q6L8H2	238 aa		4.88	□□□□□ -1.63
NR1H3-222	ENST00000483882	KRTAP5-7	Q6L8G8	165 aa		4.86	□□□□□ -1.63
NR1H3-222	ENST00000483882	KRTAP20-2	Q3LI61	65 aa		4.83	□□□□□ -1.64
NR1H3-222	ENST00000483882	LUZP6	Q538Z0	58 aa		4.83	□□□□□ -1.64
NR1H3-222	ENST00000483882	LOC100996750	A0A140TA64	210 aa		4.82	□□□□□ -1.64
NR1H3-222	ENST00000483882	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.78	□□□□□ -1.64
NR1H3-222	ENST00000483882	NDUFAF8	A1L188	74 aa		4.77	□□□□□ -1.65
NR1H3-222	ENST00000483882	KRTAP12-4	P60329	112 aa		4.74	□□□□□ -1.65
NR1H3-222	ENST00000483882	KRTAP9-6	A8MVA2	160 aa		4.73	□□□□□ -1.65
NR1H3-222	ENST00000483882	SYNE1	Q8NF91	8797 aa	Known RBP	4.64	□□□□□ -1.67
NR1H3-222	ENST00000483882	MT1A	P04731	61 aa		4.52	□□□□□ -1.69
NR1H3-222	ENST00000483882	KRTAP6-1	Q3LI64	71 aa		4.5	□□□□□ -1.69
NR1H3-222	ENST00000483882	KRTAP4-11	Q9BYQ6	195 aa		4.46	□□□□□ -1.7
NR1H3-222	ENST00000483882	KRTAP5-2	Q701N4	177 aa		4.4	□□□□□ -1.71
NR1H3-222	ENST00000483882	KRTAP9-4	Q9BYQ2	154 aa		4.34	□□□□□ -1.71
NR1H3-222	ENST00000483882		H3BS24	57 aa		4.33	□□□□□ -1.72
NR1H3-222	ENST00000483882	KRTAP5-8	O75690	187 aa		4.31	□□□□□ -1.72
NR1H3-222	ENST00000483882	KRTAP6-2	Q3LI66	62 aa		4.25	□□□□□ -1.73
NR1H3-222	ENST00000483882		A0A0A0MQY5	61 aa		4.24	□□□□□ -1.73
NR1H3-222	ENST00000483882	AHNAK	Q09666	5890 aa	Known RBP	4.21	□□□□□ -1.74
NR1H3-222	ENST00000483882	MUC5AC	P98088	5654 aa		4.19	□□□□□ -1.74
NR1H3-222	ENST00000483882	MUC5B	Q9HC84	5762 aa	Predicted RBP	4.17	□□□□□ -1.74
NR1H3-222	ENST00000483882	KRTAP9-9	Q9BYP9	154 aa		4.15	□□□□□ -1.75
NR1H3-222	ENST00000483882	OBSCN	Q5VST9	7968 aa		4.11	□□□□□ -1.75
NR1H3-222	ENST00000483882	MT3	P25713	68 aa		4.08	□□□□□ -1.76
NR1H3-222	ENST00000483882	KRTAP5-1	Q6L8H4	278 aa		4	□□□□□ -1.77
NR1H3-222	ENST00000483882	INE1	O15225	51 aa		3.98	□□□□□ -1.77
NR1H3-222	ENST00000483882	LCE1E	Q5T753	118 aa		3.73	□□□□□ -1.81
NR1H3-222	ENST00000483882	LCE3D	Q9BYE3	92 aa		3.64	□□□□□ -1.83
NR1H3-222	ENST00000483882	LCE1B	Q5T7P3	118 aa		3.6	□□□□□ -1.83
NR1H3-222	ENST00000483882	LCE3E	Q5T5B0	92 aa		3.57	□□□□□ -1.84
NR1H3-222	ENST00000483882	KRTAP4-2	Q9BYR5	136 aa		3.57	□□□□□ -1.84
NR1H3-222	ENST00000483882	LCE1C	Q5T751	118 aa		3.47	□□□□□ -1.85
NR1H3-222	ENST00000483882	KRTAP4-12	Q9BQ66	201 aa		3.35	□□□□□ -1.87
NR1H3-222	ENST00000483882	KRTAP5-11	Q6L8G4	156 aa		3.17	□□□□□ -1.9
NR1H3-222	ENST00000483882	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.17	□□□□□ -1.9
NR1H3-222	ENST00000483882	PRM1	P04553	51 aa		3.15	□□□□□ -1.91
NR1H3-222	ENST00000483882	LCE1F	Q5T754	118 aa		3.13	□□□□□ -1.91
NR1H3-222	ENST00000483882	PHGR1	C9JFL3	82 aa		2.97	□□□□□ -1.93
NR1H3-222	ENST00000483882	KRTAP21-2	Q3LI59	83 aa		2.97	□□□□□ -1.93
NR1H3-222	ENST00000483882	KRTAP4-4	Q9BYR3	166 aa		2.72	□□□□□ -1.97
NR1H3-222	ENST00000483882	MUC19	Q7Z5P9	8384 aa		2.57	□□□□□ -2
NR1H3-222	ENST00000483882	KRTAP21-1	Q3LI58	79 aa		2.24	□□□□□ -2.05
NR1H3-222	ENST00000483882	MUC16	Q8WXI7	14507 aa		1.8	□□□□□ -2.12

Retrieved 78 of 20,778 RNA–protein pairs in 109.1 ms