RNA–Protein interactions for RNA: ENST00000482647.5

SEC13-217, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-217ENST00000482647 LCE5AQ5TCM9 118 aa7.61□□□□□ -1.19
SEC13-217ENST00000482647 KRTAP25-1Q3LHN0 102 aa7.6□□□□□ -1.19
SEC13-217ENST00000482647 KRTAP2-2Q9BYT5 123 aa7.59□□□□□ -1.19
SEC13-217ENST00000482647 KRTAP2-1Q9BYU5 128 aa7.59□□□□□ -1.19
SEC13-217ENST00000482647 LCE3BQ5TA77 95 aa7.56□□□□□ -1.2
SEC13-217ENST00000482647 MT1GP13640 62 aa7.51□□□□□ -1.21
SEC13-217ENST00000482647 PP632Q6XCG6 107 aa7.46□□□□□ -1.22
SEC13-217ENST00000482647 CDC42SE1Q9NRR8 79 aa7.46□□□□□ -1.22
SEC13-217ENST00000482647 MT1LQ93083 61 aa7.45□□□□□ -1.22
SEC13-217ENST00000482647 KRTAP12-3P60328 96 aa7.43□□□□□ -1.22
SEC13-217ENST00000482647 DSTQ03001 7570 aaKnown RBP7.37□□□□□ -1.23
SEC13-217ENST00000482647 MT1MQ8N339 61 aa7.36□□□□□ -1.23
SEC13-217ENST00000482647 KRTAP23-1A1A580 65 aa7.33□□□□□ -1.24
SEC13-217ENST00000482647 ROMO1P60602 79 aa7.33□□□□□ -1.24
SEC13-217ENST00000482647 KRTAP4-3Q9BYR4 195 aa7.15□□□□□ -1.26
SEC13-217ENST00000482647 KRTAP4-7Q9BYR0 210 aa7.1□□□□□ -1.27
SEC13-217ENST00000482647 KRTAP19-4Q3LI73 84 aa7.07□□□□□ -1.28
SEC13-217ENST00000482647 KRTAP15-1Q3LI76 137 aa7.05□□□□□ -1.28
SEC13-217ENST00000482647 BRK1Q8WUW1 75 aa7□□□□□ -1.29
SEC13-217ENST00000482647 KRTAP4-9Q9BYQ8 210 aa6.94□□□□□ -1.3
SEC13-217ENST00000482647 LCE4AQ5TA78 99 aa6.92□□□□□ -1.3
SEC13-217ENST00000482647 LCE3CQ5T5A8 94 aa6.88□□□□□ -1.31
SEC13-217ENST00000482647 KRTAP5-4Q6L8H1 288 aa6.83□□□□□ -1.32
SEC13-217ENST00000482647 LCE1DQ5T752 114 aa6.82□□□□□ -1.32
SEC13-217ENST00000482647 HMCN1Q96RW7 5635 aa6.82□□□□□ -1.32
SEC13-217ENST00000482647 MT4P47944 62 aa6.79□□□□□ -1.32
SEC13-217ENST00000482647 KRTAP5-5Q701N2 237 aaPredicted RBP6.71□□□□□ -1.34
SEC13-217ENST00000482647 GPR98Q8WXG9 6306 aa6.64□□□□□ -1.35
SEC13-217ENST00000482647 PMAIP1Q13794 54 aa6.61□□□□□ -1.35
SEC13-217ENST00000482647 KRTAP9-9Q9BYP9 154 aa6.61□□□□□ -1.35
SEC13-217ENST00000482647 KRTAP9-4Q9BYQ2 154 aa6.61□□□□□ -1.35
SEC13-217ENST00000482647 KRTAP12-4P60329 112 aa6.51□□□□□ -1.37
SEC13-217ENST00000482647 SPRR5A0A1B0GTR4 108 aa6.46□□□□□ -1.38
SEC13-217ENST00000482647 AHNAK2Q8IVF2 5795 aa6.44□□□□□ -1.38
SEC13-217ENST00000482647 SYNE1Q8NF91 8797 aaKnown RBP6.44□□□□□ -1.38
SEC13-217ENST00000482647 KRTAP9-6A8MVA2 160 aa6.43□□□□□ -1.38
SEC13-217ENST00000482647 KRTAP20-2Q3LI61 65 aa6.42□□□□□ -1.38
SEC13-217ENST00000482647 KRTAP4-12Q9BQ66 201 aa6.41□□□□□ -1.38
SEC13-217ENST00000482647 MT1AP04731 61 aa6.36□□□□□ -1.39
SEC13-217ENST00000482647 PRO0628Q9UI54 55 aa6.35□□□□□ -1.39
SEC13-217ENST00000482647 KRTAP6-1Q3LI64 71 aa6.29□□□□□ -1.4
SEC13-217ENST00000482647 PRAC1Q96KF2 57 aa6.25□□□□□ -1.41
SEC13-217ENST00000482647 KRTAP5-3Q6L8H2 238 aa6.22□□□□□ -1.41
SEC13-217ENST00000482647 KRTAP4-2Q9BYR5 136 aa6.2□□□□□ -1.42
SEC13-217ENST00000482647 KRTAP5-10Q6L8G5 202 aa6.16□□□□□ -1.42
SEC13-217ENST00000482647 KRTAP5-2Q701N4 177 aa6.04□□□□□ -1.44
SEC13-217ENST00000482647 KTN1-AS1Q86SY8 53 aa6□□□□□ -1.45
SEC13-217ENST00000482647 KRTAP6-2Q3LI66 62 aa5.97□□□□□ -1.45
SEC13-217ENST00000482647 KRTAP5-7Q6L8G8 165 aa5.9□□□□□ -1.46
SEC13-217ENST00000482647 MT3P25713 68 aa5.83□□□□□ -1.48
SEC13-217ENST00000482647 KRTAP4-11Q9BYQ6 195 aa5.81□□□□□ -1.48
SEC13-217ENST00000482647 SVIPQ8NHG7 77 aa5.73□□□□□ -1.49
SEC13-217ENST00000482647 KRTAP5-8O75690 187 aa5.59□□□□□ -1.51
SEC13-217ENST00000482647 OBSCNQ5VST9 7968 aa5.59□□□□□ -1.51
SEC13-217ENST00000482647 KRTAP5-1Q6L8H4 278 aa5.35□□□□□ -1.55
SEC13-217ENST00000482647 LUZP6Q538Z0 58 aa5.31□□□□□ -1.56
SEC13-217ENST00000482647 MUC5ACP98088 5654 aa5.31□□□□□ -1.56
SEC13-217ENST00000482647 MUC5BQ9HC84 5762 aaPredicted RBP5.28□□□□□ -1.56
SEC13-217ENST00000482647 LCE1EQ5T753 118 aa5.28□□□□□ -1.56
SEC13-217ENST00000482647 AHNAKQ09666 5890 aaKnown RBP5.27□□□□□ -1.57
SEC13-217ENST00000482647 LCE3DQ9BYE3 92 aa5.03□□□□□ -1.6
SEC13-217ENST00000482647 LCE1BQ5T7P3 118 aa4.94□□□□□ -1.62
SEC13-217ENST00000482647 LCE1CQ5T751 118 aa4.89□□□□□ -1.63
SEC13-217ENST00000482647 LCE3EQ5T5B0 92 aa4.78□□□□□ -1.64
SEC13-217ENST00000482647 NDUFAF8A1L188 74 aa4.49□□□□□ -1.69
SEC13-217ENST00000482647 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.48□□□□□ -1.69
SEC13-217ENST00000482647 KRTAP5-11Q6L8G4 156 aa4.38□□□□□ -1.71
SEC13-217ENST00000482647 LCE1FQ5T754 118 aa4.22□□□□□ -1.73
SEC13-217ENST00000482647 KRTAP21-2Q3LI59 83 aa4.14□□□□□ -1.75
SEC13-217ENST00000482647 PHGR1C9JFL3 82 aa3.78□□□□□ -1.8
SEC13-217ENST00000482647 PRM1P04553 51 aa3.75□□□□□ -1.81
SEC13-217ENST00000482647 KRTAP4-4Q9BYR3 166 aa3.74□□□□□ -1.81
SEC13-217ENST00000482647 A0A0A0MQY5 61 aa3.71□□□□□ -1.82
SEC13-217ENST00000482647 INE1O15225 51 aa3.68□□□□□ -1.82
SEC13-217ENST00000482647 H3BS24 57 aa3.53□□□□□ -1.84
SEC13-217ENST00000482647 MUC19Q7Z5P9 8384 aa3.41□□□□□ -1.86
SEC13-217ENST00000482647 KRTAP21-1Q3LI58 79 aa2.73□□□□□ -1.97
SEC13-217ENST00000482647 MUC16Q8WXI7 14507 aa2.39□□□□□ -2.03
Retrieved 78 of 20,778 RNA–protein pairs in 6.2 ms