RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 KRTAP9-7A8MTY7 169 aa5.21□□□□□ -1.58
CHD3-211ENST00000481999 LCE3CQ5T5A8 94 aa5.21□□□□□ -1.58
CHD3-211ENST00000481999 KRTAP4-7Q9BYR0 210 aa5.19□□□□□ -1.58
CHD3-211ENST00000481999 INE1O15225 51 aa5.16□□□□□ -1.58
CHD3-211ENST00000481999 MT1EP04732 61 aa5.14□□□□□ -1.59
CHD3-211ENST00000481999 KRTAP6-3Q3LI67 103 aa5.11□□□□□ -1.59
CHD3-211ENST00000481999 MT1LQ93083 61 aa5.08□□□□□ -1.6
CHD3-211ENST00000481999 DSTQ03001 7570 aaKnown RBP5.06□□□□□ -1.6
CHD3-211ENST00000481999 KRTAP9-6A8MVA2 160 aa5.02□□□□□ -1.61
CHD3-211ENST00000481999 KRTAP5-9P26371 169 aa5.02□□□□□ -1.61
CHD3-211ENST00000481999 KRTAP19-4Q3LI73 84 aa5.02□□□□□ -1.61
CHD3-211ENST00000481999 MDN1Q9NU22 5596 aa4.98□□□□□ -1.61
CHD3-211ENST00000481999 SPRR2FQ96RM1 72 aa4.97□□□□□ -1.61
CHD3-211ENST00000481999 KRTAP4-3Q9BYR4 195 aa4.97□□□□□ -1.61
CHD3-211ENST00000481999 KRTAP19-3Q7Z4W3 81 aa4.87□□□□□ -1.63
CHD3-211ENST00000481999 NEBP20929 6669 aa4.85□□□□□ -1.63
CHD3-211ENST00000481999 LOC100996750A0A140TA64 210 aa4.85□□□□□ -1.63
CHD3-211ENST00000481999 KRTAP2-3P0C7H8 128 aa4.83□□□□□ -1.64
CHD3-211ENST00000481999 MT1MQ8N339 61 aa4.83□□□□□ -1.64
CHD3-211ENST00000481999 KRTAP2-4Q9BYR9 128 aa4.83□□□□□ -1.64
CHD3-211ENST00000481999 KRTAP2-1Q9BYU5 128 aa4.83□□□□□ -1.64
CHD3-211ENST00000481999 SPRR2EP22531 72 aa4.81□□□□□ -1.64
CHD3-211ENST00000481999 SPRR2BP35325 72 aa4.81□□□□□ -1.64
CHD3-211ENST00000481999 SPRR2AP35326 72 aa4.81□□□□□ -1.64
CHD3-211ENST00000481999 LCE1AQ5T7P2 110 aa4.8□□□□□ -1.64
CHD3-211ENST00000481999 MT1GP13640 62 aa4.79□□□□□ -1.64
CHD3-211ENST00000481999 LCE5AQ5TCM9 118 aa4.77□□□□□ -1.65
CHD3-211ENST00000481999 SPRR2DP22532 72 aa4.65□□□□□ -1.67
CHD3-211ENST00000481999 KRTAP20-1Q3LI63 56 aa4.58□□□□□ -1.68
CHD3-211ENST00000481999 SYNE1Q8NF91 8797 aaKnown RBP4.57□□□□□ -1.68
CHD3-211ENST00000481999 LCE3BQ5TA77 95 aa4.49□□□□□ -1.69
CHD3-211ENST00000481999 KRTAP2-2Q9BYT5 123 aa4.42□□□□□ -1.7
CHD3-211ENST00000481999 KRTAP6-1Q3LI64 71 aa4.35□□□□□ -1.71
CHD3-211ENST00000481999 KRTAP5-5Q701N2 237 aaPredicted RBP4.3□□□□□ -1.72
CHD3-211ENST00000481999 OBSCNQ5VST9 7968 aa4.27□□□□□ -1.73
CHD3-211ENST00000481999 KRTAP12-4P60329 112 aa4.25□□□□□ -1.73
CHD3-211ENST00000481999 KRTAP4-9Q9BYQ8 210 aa4.24□□□□□ -1.73
CHD3-211ENST00000481999 MT1AP04731 61 aa4.23□□□□□ -1.73
CHD3-211ENST00000481999 KRTAP5-4Q6L8H1 288 aa4.1□□□□□ -1.75
CHD3-211ENST00000481999 LCE4AQ5TA78 99 aa4.1□□□□□ -1.75
CHD3-211ENST00000481999 MT4P47944 62 aa4.06□□□□□ -1.76
CHD3-211ENST00000481999 LCE1DQ5T752 114 aa4.05□□□□□ -1.76
CHD3-211ENST00000481999 KRTAP9-4Q9BYQ2 154 aa4.02□□□□□ -1.77
CHD3-211ENST00000481999 HMCN1Q96RW7 5635 aa4.01□□□□□ -1.77
CHD3-211ENST00000481999 LCE3DQ9BYE3 92 aa4.01□□□□□ -1.77
CHD3-211ENST00000481999 KRTAP4-6Q9BYQ5 205 aa3.99□□□□□ -1.77
CHD3-211ENST00000481999 KRTAP6-2Q3LI66 62 aa3.97□□□□□ -1.77
CHD3-211ENST00000481999 LCE3EQ5T5B0 92 aa3.96□□□□□ -1.78
CHD3-211ENST00000481999 KRTAP20-2Q3LI61 65 aa3.86□□□□□ -1.79
CHD3-211ENST00000481999 MT3P25713 68 aa3.8□□□□□ -1.8
CHD3-211ENST00000481999 PRM1P04553 51 aa3.74□□□□□ -1.81
CHD3-211ENST00000481999 KRTAP5-3Q6L8H2 238 aa3.74□□□□□ -1.81
CHD3-211ENST00000481999 AHNAK2Q8IVF2 5795 aa3.73□□□□□ -1.81
CHD3-211ENST00000481999 GPR98Q8WXG9 6306 aa3.66□□□□□ -1.82
CHD3-211ENST00000481999 KRTAP5-2Q701N4 177 aa3.66□□□□□ -1.82
CHD3-211ENST00000481999 KRTAP5-10Q6L8G5 202 aa3.58□□□□□ -1.84
CHD3-211ENST00000481999 KRTAP4-11Q9BYQ6 195 aa3.44□□□□□ -1.86
CHD3-211ENST00000481999 KRTAP5-7Q6L8G8 165 aa3.37□□□□□ -1.87
CHD3-211ENST00000481999 LCE1EQ5T753 118 aa3.35□□□□□ -1.87
CHD3-211ENST00000481999 KRTAP5-8O75690 187 aa3.33□□□□□ -1.88
CHD3-211ENST00000481999 MUC5ACP98088 5654 aa3.3□□□□□ -1.88
CHD3-211ENST00000481999 LCE1BQ5T7P3 118 aa3.23□□□□□ -1.89
CHD3-211ENST00000481999 KRTAP5-1Q6L8H4 278 aa3.23□□□□□ -1.89
CHD3-211ENST00000481999 KRTAP4-2Q9BYR5 136 aa3.11□□□□□ -1.91
CHD3-211ENST00000481999 KRTAP9-9Q9BYP9 154 aa3.07□□□□□ -1.92
CHD3-211ENST00000481999 MUC5BQ9HC84 5762 aaPredicted RBP3.04□□□□□ -1.92
CHD3-211ENST00000481999 LCE1CQ5T751 118 aa3.01□□□□□ -1.93
CHD3-211ENST00000481999 AHNAKQ09666 5890 aaKnown RBP2.94□□□□□ -1.94
CHD3-211ENST00000481999 LCE1FQ5T754 118 aa2.93□□□□□ -1.94
CHD3-211ENST00000481999 KRTAP21-2Q3LI59 83 aa2.81□□□□□ -1.96
CHD3-211ENST00000481999 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.79□□□□□ -1.96
CHD3-211ENST00000481999 KRTAP4-12Q9BQ66 201 aa2.73□□□□□ -1.97
CHD3-211ENST00000481999 KRTAP4-4Q9BYR3 166 aa2.67□□□□□ -1.98
CHD3-211ENST00000481999 KRTAP5-11Q6L8G4 156 aa2.65□□□□□ -1.99
CHD3-211ENST00000481999 MUC19Q7Z5P9 8384 aa2.59□□□□□ -1.99
CHD3-211ENST00000481999 KRTAP21-1Q3LI58 79 aa2.37□□□□□ -2.03
CHD3-211ENST00000481999 PHGR1C9JFL3 82 aa2.3□□□□□ -2.04
CHD3-211ENST00000481999 MUC16Q8WXI7 14507 aa1.49□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 268.1 ms