RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 KRTAP4-12Q9BQ66 201 aa6.37□□□□□ -1.39
UPF3A-206ENST00000480362 SVIPQ8NHG7 77 aa6.36□□□□□ -1.39
UPF3A-206ENST00000480362 NEBP20929 6669 aa6.34□□□□□ -1.4
UPF3A-206ENST00000480362 KRTAP15-1Q3LI76 137 aa6.32□□□□□ -1.4
UPF3A-206ENST00000480362 MUC12Q9UKN1 5478 aa6.29□□□□□ -1.4
UPF3A-206ENST00000480362 MT1LQ93083 61 aa6.28□□□□□ -1.4
UPF3A-206ENST00000480362 LCE1AQ5T7P2 110 aa6.23□□□□□ -1.41
UPF3A-206ENST00000480362 KRTAP19-3Q7Z4W3 81 aa6.23□□□□□ -1.41
UPF3A-206ENST00000480362 SPRR2EP22531 72 aa6.22□□□□□ -1.41
UPF3A-206ENST00000480362 SPRR2BP35325 72 aa6.22□□□□□ -1.41
UPF3A-206ENST00000480362 SPRR2AP35326 72 aa6.22□□□□□ -1.41
UPF3A-206ENST00000480362 KRTAP19-4Q3LI73 84 aa6.19□□□□□ -1.42
UPF3A-206ENST00000480362 MDN1Q9NU22 5596 aa6.18□□□□□ -1.42
UPF3A-206ENST00000480362 MT1GP13640 62 aa6.17□□□□□ -1.42
UPF3A-206ENST00000480362 LCE5AQ5TCM9 118 aa6.15□□□□□ -1.42
UPF3A-206ENST00000480362 LCE3BQ5TA77 95 aa6.13□□□□□ -1.43
UPF3A-206ENST00000480362 LCE4AQ5TA78 99 aa6.12□□□□□ -1.43
UPF3A-206ENST00000480362 MT1MQ8N339 61 aa6.08□□□□□ -1.44
UPF3A-206ENST00000480362 LCE3CQ5T5A8 94 aa6.06□□□□□ -1.44
UPF3A-206ENST00000480362 KRTAP20-1Q3LI63 56 aa6.05□□□□□ -1.44
UPF3A-206ENST00000480362 KRTAP4-7Q9BYR0 210 aa6.05□□□□□ -1.44
UPF3A-206ENST00000480362 KRTAP9-9Q9BYP9 154 aa6.04□□□□□ -1.44
UPF3A-206ENST00000480362 KRTAP9-4Q9BYQ2 154 aa6.04□□□□□ -1.44
UPF3A-206ENST00000480362 SPRR2DP22532 72 aa6□□□□□ -1.45
UPF3A-206ENST00000480362 KRTAP2-3P0C7H8 128 aa5.96□□□□□ -1.46
UPF3A-206ENST00000480362 KRTAP4-3Q9BYR4 195 aa5.96□□□□□ -1.46
UPF3A-206ENST00000480362 KRTAP2-4Q9BYR9 128 aa5.96□□□□□ -1.46
UPF3A-206ENST00000480362 SPRR5A0A1B0GTR4 108 aa5.8□□□□□ -1.48
UPF3A-206ENST00000480362 KRTAP2-2Q9BYT5 123 aa5.79□□□□□ -1.48
UPF3A-206ENST00000480362 KRTAP2-1Q9BYU5 128 aa5.79□□□□□ -1.48
UPF3A-206ENST00000480362 LCE1DQ5T752 114 aa5.75□□□□□ -1.49
UPF3A-206ENST00000480362 DSTQ03001 7570 aaKnown RBP5.74□□□□□ -1.49
UPF3A-206ENST00000480362 KRTAP9-6A8MVA2 160 aa5.72□□□□□ -1.49
UPF3A-206ENST00000480362 KRTAP4-9Q9BYQ8 210 aa5.56□□□□□ -1.52
UPF3A-206ENST00000480362 GPR98Q8WXG9 6306 aa5.53□□□□□ -1.52
UPF3A-206ENST00000480362 LUZP6Q538Z0 58 aa5.49□□□□□ -1.53
UPF3A-206ENST00000480362 KRTAP5-5Q701N2 237 aaPredicted RBP5.49□□□□□ -1.53
UPF3A-206ENST00000480362 KRTAP4-11Q9BYQ6 195 aa5.42□□□□□ -1.54
UPF3A-206ENST00000480362 KRTAP4-2Q9BYR5 136 aa5.37□□□□□ -1.55
UPF3A-206ENST00000480362 KRTAP5-4Q6L8H1 288 aa5.36□□□□□ -1.55
UPF3A-206ENST00000480362 MT1AP04731 61 aa5.34□□□□□ -1.55
UPF3A-206ENST00000480362 KRTAP6-1Q3LI64 71 aa5.29□□□□□ -1.56
UPF3A-206ENST00000480362 MT4P47944 62 aa5.21□□□□□ -1.58
UPF3A-206ENST00000480362 NDUFAF8A1L188 74 aa5.19□□□□□ -1.58
UPF3A-206ENST00000480362 SYNE1Q8NF91 8797 aaKnown RBP5.17□□□□□ -1.58
UPF3A-206ENST00000480362 KRTAP12-4P60329 112 aa5.17□□□□□ -1.58
UPF3A-206ENST00000480362 A0A0A0MQY5 61 aa5.1□□□□□ -1.59
UPF3A-206ENST00000480362 HMCN1Q96RW7 5635 aa5.07□□□□□ -1.6
UPF3A-206ENST00000480362 KRTAP20-2Q3LI61 65 aa5.02□□□□□ -1.61
UPF3A-206ENST00000480362 KRTAP6-2Q3LI66 62 aa4.92□□□□□ -1.62
UPF3A-206ENST00000480362 MT3P25713 68 aa4.85□□□□□ -1.63
UPF3A-206ENST00000480362 KRTAP5-3Q6L8H2 238 aa4.85□□□□□ -1.63
UPF3A-206ENST00000480362 KRTAP5-2Q701N4 177 aa4.82□□□□□ -1.64
UPF3A-206ENST00000480362 AHNAK2Q8IVF2 5795 aa4.81□□□□□ -1.64
UPF3A-206ENST00000480362 KRTAP5-10Q6L8G5 202 aa4.76□□□□□ -1.65
UPF3A-206ENST00000480362 KRTAP5-7Q6L8G8 165 aa4.64□□□□□ -1.67
UPF3A-206ENST00000480362 LCE3DQ9BYE3 92 aa4.51□□□□□ -1.69
UPF3A-206ENST00000480362 OBSCNQ5VST9 7968 aa4.4□□□□□ -1.7
UPF3A-206ENST00000480362 LCE3EQ5T5B0 92 aa4.37□□□□□ -1.71
UPF3A-206ENST00000480362 KRTAP5-8O75690 187 aa4.29□□□□□ -1.72
UPF3A-206ENST00000480362 INE1O15225 51 aa4.26□□□□□ -1.73
UPF3A-206ENST00000480362 LCE1EQ5T753 118 aa4.26□□□□□ -1.73
UPF3A-206ENST00000480362 AHNAKQ09666 5890 aaKnown RBP4.2□□□□□ -1.74
UPF3A-206ENST00000480362 KRTAP5-1Q6L8H4 278 aa4.2□□□□□ -1.74
UPF3A-206ENST00000480362 MUC5ACP98088 5654 aa4.13□□□□□ -1.75
UPF3A-206ENST00000480362 MUC5BQ9HC84 5762 aaPredicted RBP4.03□□□□□ -1.76
UPF3A-206ENST00000480362 LCE1BQ5T7P3 118 aa4.02□□□□□ -1.77
UPF3A-206ENST00000480362 LCE1FQ5T754 118 aa3.99□□□□□ -1.77
UPF3A-206ENST00000480362 LCE1CQ5T751 118 aa3.96□□□□□ -1.78
UPF3A-206ENST00000480362 KRTAP5-11Q6L8G4 156 aa3.71□□□□□ -1.82
UPF3A-206ENST00000480362 PRM1P04553 51 aa3.69□□□□□ -1.82
UPF3A-206ENST00000480362 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.68□□□□□ -1.82
UPF3A-206ENST00000480362 KRTAP21-2Q3LI59 83 aa3.47□□□□□ -1.85
UPF3A-206ENST00000480362 KRTAP4-4Q9BYR3 166 aa3.11□□□□□ -1.91
UPF3A-206ENST00000480362 PHGR1C9JFL3 82 aa3.02□□□□□ -1.93
UPF3A-206ENST00000480362 MUC19Q7Z5P9 8384 aa2.63□□□□□ -1.99
UPF3A-206ENST00000480362 KRTAP21-1Q3LI58 79 aa2.2□□□□□ -2.06
UPF3A-206ENST00000480362 MUC16Q8WXI7 14507 aa1.93□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 99.6 ms