RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	KRTAP10-12	P60413	245 aa		4.41	□□□□□ -1.7
APTX-223	ENST00000479656	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.39	□□□□□ -1.71
APTX-223	ENST00000479656	LCE3A	Q5TA76	89 aa		4.36	□□□□□ -1.71
APTX-223	ENST00000479656	PP632	Q6XCG6	107 aa		4.32	□□□□□ -1.72
APTX-223	ENST00000479656	LCE4A	Q5TA78	99 aa		4.3	□□□□□ -1.72
APTX-223	ENST00000479656	KMT2D	O14686	5537 aa		4.29	□□□□□ -1.72
APTX-223	ENST00000479656	KRTAP8-1	Q8IUC2	63 aa		4.24	□□□□□ -1.73
APTX-223	ENST00000479656	LCE5A	Q5TCM9	118 aa		4.22	□□□□□ -1.73
APTX-223	ENST00000479656	KRTAP19-5	Q3LI72	72 aa		4.2	□□□□□ -1.74
APTX-223	ENST00000479656	KRTAP9-7	A8MTY7	169 aa		4.2	□□□□□ -1.74
APTX-223	ENST00000479656	MACF1	Q9UPN3	7388 aa	Known RBP	4.18	□□□□□ -1.74
APTX-223	ENST00000479656	KRTAP12-3	P60328	96 aa		4.18	□□□□□ -1.74
APTX-223	ENST00000479656	KRTAP19-7	Q3SYF9	63 aa		4.16	□□□□□ -1.74
APTX-223	ENST00000479656	MT1E	P04732	61 aa		4.08	□□□□□ -1.76
APTX-223	ENST00000479656	SPRR2F	Q96RM1	72 aa		4.07	□□□□□ -1.76
APTX-223	ENST00000479656	SYNE2	Q8WXH0	6885 aa	Known RBP	4.06	□□□□□ -1.76
APTX-223	ENST00000479656	KRTAP5-9	P26371	169 aa		4.03	□□□□□ -1.76
APTX-223	ENST00000479656	KRTAP6-3	Q3LI67	103 aa		4.01	□□□□□ -1.77
APTX-223	ENST00000479656	MT1L	Q93083	61 aa		3.99	□□□□□ -1.77
APTX-223	ENST00000479656	MUC12	Q9UKN1	5478 aa		3.97	□□□□□ -1.77
APTX-223	ENST00000479656	KRTAP19-3	Q7Z4W3	81 aa		3.94	□□□□□ -1.78
APTX-223	ENST00000479656	MT1G	P13640	62 aa		3.9	□□□□□ -1.78
APTX-223	ENST00000479656	LCE3C	Q5T5A8	94 aa		3.9	□□□□□ -1.78
APTX-223	ENST00000479656	LCE1A	Q5T7P2	110 aa		3.9	□□□□□ -1.78
APTX-223	ENST00000479656	INE1	O15225	51 aa		3.89	□□□□□ -1.79
APTX-223	ENST00000479656	SPRR2E	P22531	72 aa		3.88	□□□□□ -1.79
APTX-223	ENST00000479656	SPRR2B	P35325	72 aa		3.88	□□□□□ -1.79
APTX-223	ENST00000479656	SPRR2A	P35326	72 aa		3.88	□□□□□ -1.79
APTX-223	ENST00000479656	SPRR5	A0A1B0GTR4	108 aa		3.88	□□□□□ -1.79
APTX-223	ENST00000479656	MT1M	Q8N339	61 aa		3.86	□□□□□ -1.79
APTX-223	ENST00000479656	MDN1	Q9NU22	5596 aa		3.83	□□□□□ -1.8
APTX-223	ENST00000479656	KRTAP4-3	Q9BYR4	195 aa		3.81	□□□□□ -1.8
APTX-223	ENST00000479656	SPRR2D	P22532	72 aa		3.74	□□□□□ -1.81
APTX-223	ENST00000479656	KRTAP9-6	A8MVA2	160 aa		3.7	□□□□□ -1.82
APTX-223	ENST00000479656	NEB	P20929	6669 aa		3.66	□□□□□ -1.82
APTX-223	ENST00000479656	DST	Q03001	7570 aa	Known RBP	3.66	□□□□□ -1.82
APTX-223	ENST00000479656	KRTAP2-3	P0C7H8	128 aa		3.52	□□□□□ -1.85
APTX-223	ENST00000479656	KRTAP2-4	Q9BYR9	128 aa		3.52	□□□□□ -1.85
APTX-223	ENST00000479656	KRTAP20-1	Q3LI63	56 aa		3.48	□□□□□ -1.85
APTX-223	ENST00000479656	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.47	□□□□□ -1.85
APTX-223	ENST00000479656	KRTAP2-2	Q9BYT5	123 aa		3.45	□□□□□ -1.86
APTX-223	ENST00000479656	KRTAP2-1	Q9BYU5	128 aa		3.45	□□□□□ -1.86
APTX-223	ENST00000479656	MT3	P25713	68 aa		3.41	□□□□□ -1.86
APTX-223	ENST00000479656	MT1A	P04731	61 aa		3.39	□□□□□ -1.87
APTX-223	ENST00000479656	KRTAP6-1	Q3LI64	71 aa		3.37	□□□□□ -1.87
APTX-223	ENST00000479656	KRTAP5-4	Q6L8H1	288 aa		3.35	□□□□□ -1.87
APTX-223	ENST00000479656	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.33	□□□□□ -1.88
APTX-223	ENST00000479656	MT4	P47944	62 aa		3.27	□□□□□ -1.89
APTX-223	ENST00000479656	SYNE1	Q8NF91	8797 aa	Known RBP	3.26	□□□□□ -1.89
APTX-223	ENST00000479656	KRTAP12-4	P60329	112 aa		3.25	□□□□□ -1.89
APTX-223	ENST00000479656	GPR98	Q8WXG9	6306 aa		3.15	□□□□□ -1.91
APTX-223	ENST00000479656	KRTAP20-2	Q3LI61	65 aa		3.15	□□□□□ -1.91
APTX-223	ENST00000479656	KRTAP6-2	Q3LI66	62 aa		3.12	□□□□□ -1.91
APTX-223	ENST00000479656	HMCN1	Q96RW7	5635 aa		3.1	□□□□□ -1.91
APTX-223	ENST00000479656	KRTAP5-11	Q6L8G4	156 aa		3.07	□□□□□ -1.92
APTX-223	ENST00000479656	LCE1F	Q5T754	118 aa		3.03	□□□□□ -1.93
APTX-223	ENST00000479656	KRTAP5-2	Q701N4	177 aa		3.02	□□□□□ -1.93
APTX-223	ENST00000479656	LCE3D	Q9BYE3	92 aa		2.92	□□□□□ -1.94
APTX-223	ENST00000479656	KRTAP5-1	Q6L8H4	278 aa		2.85	□□□□□ -1.95
APTX-223	ENST00000479656	OBSCN	Q5VST9	7968 aa		2.83	□□□□□ -1.96
APTX-223	ENST00000479656	LCE3E	Q5T5B0	92 aa		2.83	□□□□□ -1.96
APTX-223	ENST00000479656	KRTAP4-4	Q9BYR3	166 aa		2.77	□□□□□ -1.97
APTX-223	ENST00000479656	AHNAK2	Q8IVF2	5795 aa		2.75	□□□□□ -1.97
APTX-223	ENST00000479656	KRTAP5-10	Q6L8G5	202 aa		2.69	□□□□□ -1.98
APTX-223	ENST00000479656	LCE1E	Q5T753	118 aa		2.68	□□□□□ -1.98
APTX-223	ENST00000479656	KRTAP5-8	O75690	187 aa		2.65	□□□□□ -1.99
APTX-223	ENST00000479656	KRTAP5-7	Q6L8G8	165 aa		2.56	□□□□□ -2
APTX-223	ENST00000479656	LCE1B	Q5T7P3	118 aa		2.55	□□□□□ -2
APTX-223	ENST00000479656	LCE1C	Q5T751	118 aa		2.5	□□□□□ -2.01
APTX-223	ENST00000479656	MUC5AC	P98088	5654 aa		2.46	□□□□□ -2.02
APTX-223	ENST00000479656	PRM1	P04553	51 aa		2.44	□□□□□ -2.02
APTX-223	ENST00000479656	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.42	□□□□□ -2.02
APTX-223	ENST00000479656	AHNAK	Q09666	5890 aa	Known RBP	2.42	□□□□□ -2.02
APTX-223	ENST00000479656	KRTAP21-2	Q3LI59	83 aa		2.21	□□□□□ -2.06
APTX-223	ENST00000479656	PHGR1	C9JFL3	82 aa		1.9	□□□□□ -2.11
APTX-223	ENST00000479656	MUC19	Q7Z5P9	8384 aa		1.68	□□□□□ -2.14
APTX-223	ENST00000479656	KRTAP21-1	Q3LI58	79 aa		1.68	□□□□□ -2.14
APTX-223	ENST00000479656	MUC16	Q8WXI7	14507 aa		1.2	□□□□□ -2.22

Retrieved 78 of 20,778 RNA–protein pairs in 102.5 ms