RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 KRTAP10-10P60014 251 aa2.91□□□□□ -1.94
SF3B1-209ENST00000479532 MT2AP02795 61 aa2.89□□□□□ -1.95
SF3B1-209ENST00000479532 MT1FP04733 61 aa2.86□□□□□ -1.95
SF3B1-209ENST00000479532 PLAC4Q8WY50 150 aa2.86□□□□□ -1.95
SF3B1-209ENST00000479532 LCE3EQ5T5B0 92 aa2.83□□□□□ -1.96
SF3B1-209ENST00000479532 PP632Q6XCG6 107 aa2.82□□□□□ -1.96
SF3B1-209ENST00000479532 KRTAP5-5Q701N2 237 aaPredicted RBP2.82□□□□□ -1.96
SF3B1-209ENST00000479532 M0QZ58 72 aa2.8□□□□□ -1.96
SF3B1-209ENST00000479532 C10orf95Q9H7T3 257 aa2.8□□□□□ -1.96
SF3B1-209ENST00000479532 PRO2289Q9P1D8 64 aa2.8□□□□□ -1.96
SF3B1-209ENST00000479532 LCE1CQ5T751 118 aa2.79□□□□□ -1.96
SF3B1-209ENST00000479532 LCE1BQ5T7P3 118 aa2.79□□□□□ -1.96
SF3B1-209ENST00000479532 R4GN34 69 aa2.78□□□□□ -1.96
SF3B1-209ENST00000479532 KRTAP12-1P59990 96 aa2.77□□□□□ -1.97
SF3B1-209ENST00000479532 KRTAP13-4Q3LI77 160 aa2.77□□□□□ -1.97
SF3B1-209ENST00000479532 KRTAP12-2P59991 146 aa2.76□□□□□ -1.97
SF3B1-209ENST00000479532 SPRR2GQ9BYE4 73 aa2.76□□□□□ -1.97
SF3B1-209ENST00000479532 INE1O15225 51 aa2.74□□□□□ -1.97
SF3B1-209ENST00000479532 CRCT1Q9UGL9 99 aa2.74□□□□□ -1.97
SF3B1-209ENST00000479532 A0A0D9SG42 100 aa2.71□□□□□ -1.98
SF3B1-209ENST00000479532 SPRR5A0A1B0GTR4 108 aa2.71□□□□□ -1.98
SF3B1-209ENST00000479532 KRTAP19-8Q3LI54 63 aa2.71□□□□□ -1.98
SF3B1-209ENST00000479532 USH2AO75445 5202 aa2.68□□□□□ -1.98
SF3B1-209ENST00000479532 FSIP2Q5CZC0 6907 aa2.66□□□□□ -1.98
SF3B1-209ENST00000479532 MT1BP07438 61 aa2.66□□□□□ -1.98
SF3B1-209ENST00000479532 KRTAP19-6Q3LI70 58 aa2.66□□□□□ -1.98
SF3B1-209ENST00000479532 SSPOA2VEC9 5147 aa2.63□□□□□ -1.99
SF3B1-209ENST00000479532 FCGBPQ9Y6R7 5405 aaPredicted RBP2.55□□□□□ -2
SF3B1-209ENST00000479532 MT1XP80297 61 aa2.54□□□□□ -2
SF3B1-209ENST00000479532 TNP1P09430 55 aa2.47□□□□□ -2.01
SF3B1-209ENST00000479532 MACF1Q9UPN3 7388 aaKnown RBP2.46□□□□□ -2.02
SF3B1-209ENST00000479532 KRTAP6-3Q3LI67 103 aa2.43□□□□□ -2.02
SF3B1-209ENST00000479532 KRTAP8-1Q8IUC2 63 aa2.42□□□□□ -2.02
SF3B1-209ENST00000479532 LCE3DQ9BYE3 92 aa2.4□□□□□ -2.03
SF3B1-209ENST00000479532 SYNE2Q8WXH0 6885 aaKnown RBP2.39□□□□□ -2.03
SF3B1-209ENST00000479532 SPRR2FQ96RM1 72 aa2.36□□□□□ -2.03
SF3B1-209ENST00000479532 KMT2DO14686 5537 aa2.34□□□□□ -2.03
SF3B1-209ENST00000479532 MUC19Q7Z5P9 8384 aa2.34□□□□□ -2.04
SF3B1-209ENST00000479532 SPRR2EP22531 72 aa2.3□□□□□ -2.04
SF3B1-209ENST00000479532 SPRR2BP35325 72 aa2.3□□□□□ -2.04
SF3B1-209ENST00000479532 SPRR2AP35326 72 aa2.3□□□□□ -2.04
SF3B1-209ENST00000479532 MUC12Q9UKN1 5478 aa2.28□□□□□ -2.04
SF3B1-209ENST00000479532 KRTAP19-5Q3LI72 72 aa2.27□□□□□ -2.05
SF3B1-209ENST00000479532 MT1EP04732 61 aa2.26□□□□□ -2.05
SF3B1-209ENST00000479532 KRTAP19-7Q3SYF9 63 aa2.26□□□□□ -2.05
SF3B1-209ENST00000479532 KRTAP12-3P60328 96 aa2.24□□□□□ -2.05
SF3B1-209ENST00000479532 NEBP20929 6669 aa2.23□□□□□ -2.05
SF3B1-209ENST00000479532 MDN1Q9NU22 5596 aa2.23□□□□□ -2.05
SF3B1-209ENST00000479532 SPRR2DP22532 72 aa2.22□□□□□ -2.05
SF3B1-209ENST00000479532 KRTAP5-7Q6L8G8 165 aa2.22□□□□□ -2.05
SF3B1-209ENST00000479532 KRTAP19-3Q7Z4W3 81 aa2.22□□□□□ -2.05
SF3B1-209ENST00000479532 KRTAP20-1Q3LI63 56 aa2.2□□□□□ -2.06
SF3B1-209ENST00000479532 MT1GP13640 62 aa2.19□□□□□ -2.06
SF3B1-209ENST00000479532 KRTAP2-3P0C7H8 128 aa2.18□□□□□ -2.06
SF3B1-209ENST00000479532 MT1LQ93083 61 aa2.18□□□□□ -2.06
SF3B1-209ENST00000479532 KRTAP2-4Q9BYR9 128 aa2.18□□□□□ -2.06
SF3B1-209ENST00000479532 MT1MQ8N339 61 aa2.14□□□□□ -2.07
SF3B1-209ENST00000479532 KRTAP2-1Q9BYU5 128 aa2.12□□□□□ -2.07
SF3B1-209ENST00000479532 DSTQ03001 7570 aaKnown RBP2.03□□□□□ -2.09
SF3B1-209ENST00000479532 KRTAP21-2Q3LI59 83 aa2.01□□□□□ -2.09
SF3B1-209ENST00000479532 HMCN1Q96RW7 5635 aa1.93□□□□□ -2.1
SF3B1-209ENST00000479532 MT4P47944 62 aa1.92□□□□□ -2.1
SF3B1-209ENST00000479532 KRTAP12-4P60329 112 aa1.9□□□□□ -2.11
SF3B1-209ENST00000479532 MT1AP04731 61 aa1.87□□□□□ -2.11
SF3B1-209ENST00000479532 KRTAP6-1Q3LI64 71 aa1.83□□□□□ -2.12
SF3B1-209ENST00000479532 KRTAP20-2Q3LI61 65 aa1.82□□□□□ -2.12
SF3B1-209ENST00000479532 SYNE1Q8NF91 8797 aaKnown RBP1.79□□□□□ -2.12
SF3B1-209ENST00000479532 KRTAP6-2Q3LI66 62 aa1.72□□□□□ -2.13
SF3B1-209ENST00000479532 AHNAK2Q8IVF2 5795 aa1.7□□□□□ -2.14
SF3B1-209ENST00000479532 KRTAP5-10Q6L8G5 202 aa1.67□□□□□ -2.14
SF3B1-209ENST00000479532 GPR98Q8WXG9 6306 aa1.65□□□□□ -2.15
SF3B1-209ENST00000479532 PRM1P04553 51 aa1.61□□□□□ -2.15
SF3B1-209ENST00000479532 MUC5ACP98088 5654 aa1.43□□□□□ -2.18
SF3B1-209ENST00000479532 MUC5BQ9HC84 5762 aaPredicted RBP1.38□□□□□ -2.19
SF3B1-209ENST00000479532 AHNAKQ09666 5890 aaKnown RBP1.34□□□□□ -2.2
SF3B1-209ENST00000479532 KRTAP21-1Q3LI58 79 aa1.17□□□□□ -2.22
SF3B1-209ENST00000479532 PHGR1C9JFL3 82 aa1.08□□□□□ -2.24
SF3B1-209ENST00000479532 MUC16Q8WXI7 14507 aa0.81□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 12.4 ms