RNA–Protein interactions for RNA: ENST00000477541.1

HLA-DMA-208, Transcript of major histocompatibility complex, class II, DM alpha, humanhuman

Gene HLA-DMA, Length 1,735 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMA-208ENST00000477541 MT1BP07438 61 aa5.29□□□□□ -1.56
HLA-DMA-208ENST00000477541 KRTAP4-8A0A0G2JLE6 195 aa5.28□□□□□ -1.56
HLA-DMA-208ENST00000477541 NEBP20929 6669 aa5.24□□□□□ -1.57
HLA-DMA-208ENST00000477541 KRTAP20-1Q3LI63 56 aa5.17□□□□□ -1.58
HLA-DMA-208ENST00000477541 KRTAP19-6Q3LI70 58 aa5.17□□□□□ -1.58
HLA-DMA-208ENST00000477541 KRTAP9-3Q9BYQ3 159 aa5.13□□□□□ -1.59
HLA-DMA-208ENST00000477541 KRTAP10-7P60409 375 aaPredicted RBP5.11□□□□□ -1.59
HLA-DMA-208ENST00000477541 KRTAP4-7Q9BYR0 210 aa5.1□□□□□ -1.59
HLA-DMA-208ENST00000477541 MUC12Q9UKN1 5478 aa5.08□□□□□ -1.6
HLA-DMA-208ENST00000477541 LCE1DQ5T752 114 aa5.06□□□□□ -1.6
HLA-DMA-208ENST00000477541 LCE3CQ5T5A8 94 aa5.03□□□□□ -1.6
HLA-DMA-208ENST00000477541 KRTAP19-4Q3LI73 84 aa5.02□□□□□ -1.61
HLA-DMA-208ENST00000477541 KRTAP19-5Q3LI72 72 aa4.97□□□□□ -1.61
HLA-DMA-208ENST00000477541 KRTAP4-9Q9BYQ8 210 aa4.95□□□□□ -1.62
HLA-DMA-208ENST00000477541 KRTAP4-2Q9BYR5 136 aa4.9□□□□□ -1.62
HLA-DMA-208ENST00000477541 KRTAP2-3P0C7H8 128 aa4.89□□□□□ -1.63
HLA-DMA-208ENST00000477541 KRTAP2-4Q9BYR9 128 aa4.89□□□□□ -1.63
HLA-DMA-208ENST00000477541 MDN1Q9NU22 5596 aa4.89□□□□□ -1.63
HLA-DMA-208ENST00000477541 KMT2DO14686 5537 aa4.83□□□□□ -1.64
HLA-DMA-208ENST00000477541 KRTAP5-9P26371 169 aa4.83□□□□□ -1.64
HLA-DMA-208ENST00000477541 KRTAP2-1Q9BYU5 128 aa4.8□□□□□ -1.64
HLA-DMA-208ENST00000477541 KRTAP4-11Q9BYQ6 195 aa4.75□□□□□ -1.65
HLA-DMA-208ENST00000477541 KRTAP9-6A8MVA2 160 aa4.74□□□□□ -1.65
HLA-DMA-208ENST00000477541 GPR98Q8WXG9 6306 aa4.73□□□□□ -1.65
HLA-DMA-208ENST00000477541 KRTAP19-7Q3SYF9 63 aa4.72□□□□□ -1.65
HLA-DMA-208ENST00000477541 LCE4AQ5TA78 99 aa4.72□□□□□ -1.65
HLA-DMA-208ENST00000477541 KRTAP2-2Q9BYT5 123 aa4.7□□□□□ -1.66
HLA-DMA-208ENST00000477541 MT1LQ93083 61 aa4.63□□□□□ -1.67
HLA-DMA-208ENST00000477541 MT1EP04732 61 aa4.6□□□□□ -1.67
HLA-DMA-208ENST00000477541 SPRR2EP22531 72 aa4.56□□□□□ -1.68
HLA-DMA-208ENST00000477541 SPRR2BP35325 72 aa4.56□□□□□ -1.68
HLA-DMA-208ENST00000477541 SPRR2AP35326 72 aa4.56□□□□□ -1.68
HLA-DMA-208ENST00000477541 LCE5AQ5TCM9 118 aa4.53□□□□□ -1.68
HLA-DMA-208ENST00000477541 KRTAP5-3Q6L8H2 238 aa4.49□□□□□ -1.69
HLA-DMA-208ENST00000477541 SPRR2FQ96RM1 72 aa4.49□□□□□ -1.69
HLA-DMA-208ENST00000477541 LCE1AQ5T7P2 110 aa4.45□□□□□ -1.7
HLA-DMA-208ENST00000477541 SPRR2DP22532 72 aa4.43□□□□□ -1.7
HLA-DMA-208ENST00000477541 MT1GP13640 62 aa4.32□□□□□ -1.72
HLA-DMA-208ENST00000477541 KRTAP19-3Q7Z4W3 81 aa4.28□□□□□ -1.72
HLA-DMA-208ENST00000477541 MT1MQ8N339 61 aa4.28□□□□□ -1.72
HLA-DMA-208ENST00000477541 DSTQ03001 7570 aaKnown RBP4.21□□□□□ -1.73
HLA-DMA-208ENST00000477541 KRTAP12-4P60329 112 aa4.2□□□□□ -1.74
HLA-DMA-208ENST00000477541 KRTAP4-3Q9BYR4 195 aa4.18□□□□□ -1.74
HLA-DMA-208ENST00000477541 HMCN1Q96RW7 5635 aa4.13□□□□□ -1.75
HLA-DMA-208ENST00000477541 MT1AP04731 61 aa4.11□□□□□ -1.75
HLA-DMA-208ENST00000477541 AHNAK2Q8IVF2 5795 aa4.1□□□□□ -1.75
HLA-DMA-208ENST00000477541 KRTAP5-10Q6L8G5 202 aa4.09□□□□□ -1.75
HLA-DMA-208ENST00000477541 KRTAP5-7Q6L8G8 165 aa4.03□□□□□ -1.76
HLA-DMA-208ENST00000477541 LCE3DQ9BYE3 92 aa3.9□□□□□ -1.78
HLA-DMA-208ENST00000477541 MT4P47944 62 aa3.9□□□□□ -1.79
HLA-DMA-208ENST00000477541 LCE3EQ5T5B0 92 aa3.9□□□□□ -1.79
HLA-DMA-208ENST00000477541 KRTAP6-1Q3LI64 71 aa3.87□□□□□ -1.79
HLA-DMA-208ENST00000477541 KRTAP5-5Q701N2 237 aaPredicted RBP3.79□□□□□ -1.8
HLA-DMA-208ENST00000477541 KRTAP5-4Q6L8H1 288 aa3.74□□□□□ -1.81
HLA-DMA-208ENST00000477541 PRM1P04553 51 aa3.72□□□□□ -1.81
HLA-DMA-208ENST00000477541 SYNE1Q8NF91 8797 aaKnown RBP3.69□□□□□ -1.82
HLA-DMA-208ENST00000477541 AHNAKQ09666 5890 aaKnown RBP3.64□□□□□ -1.83
HLA-DMA-208ENST00000477541 KRTAP6-2Q3LI66 62 aa3.57□□□□□ -1.84
HLA-DMA-208ENST00000477541 KRTAP20-2Q3LI61 65 aa3.55□□□□□ -1.84
HLA-DMA-208ENST00000477541 MT3P25713 68 aa3.54□□□□□ -1.84
HLA-DMA-208ENST00000477541 MUC5ACP98088 5654 aa3.51□□□□□ -1.85
HLA-DMA-208ENST00000477541 MUC5BQ9HC84 5762 aaPredicted RBP3.48□□□□□ -1.85
HLA-DMA-208ENST00000477541 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.34□□□□□ -1.87
HLA-DMA-208ENST00000477541 KRTAP5-8O75690 187 aa3.32□□□□□ -1.88
HLA-DMA-208ENST00000477541 LCE1FQ5T754 118 aa3.29□□□□□ -1.88
HLA-DMA-208ENST00000477541 KRTAP5-11Q6L8G4 156 aa3.21□□□□□ -1.9
HLA-DMA-208ENST00000477541 KRTAP5-2Q701N4 177 aa3.18□□□□□ -1.9
HLA-DMA-208ENST00000477541 OBSCNQ5VST9 7968 aa3.04□□□□□ -1.92
HLA-DMA-208ENST00000477541 KRTAP5-1Q6L8H4 278 aa2.95□□□□□ -1.94
HLA-DMA-208ENST00000477541 LCE1EQ5T753 118 aa2.93□□□□□ -1.94
HLA-DMA-208ENST00000477541 KRTAP4-4Q9BYR3 166 aa2.78□□□□□ -1.96
HLA-DMA-208ENST00000477541 LCE1CQ5T751 118 aa2.71□□□□□ -1.98
HLA-DMA-208ENST00000477541 LCE1BQ5T7P3 118 aa2.71□□□□□ -1.98
HLA-DMA-208ENST00000477541 KRTAP21-2Q3LI59 83 aa2.53□□□□□ -2
HLA-DMA-208ENST00000477541 KRTAP21-1Q3LI58 79 aa2.45□□□□□ -2.02
HLA-DMA-208ENST00000477541 PHGR1C9JFL3 82 aa2.39□□□□□ -2.03
HLA-DMA-208ENST00000477541 MUC19Q7Z5P9 8384 aa1.93□□□□□ -2.1
HLA-DMA-208ENST00000477541 MUC16Q8WXI7 14507 aa1.39□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 79.7 ms