RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 LUZP6Q538Z0 58 aa4.37□□□□□ -1.71
HLA-DMB-260ENST00000477537 PRO2289Q9P1D8 64 aa4.36□□□□□ -1.71
HLA-DMB-260ENST00000477537 KRTAP10-12P60413 245 aa4.35□□□□□ -1.71
HLA-DMB-260ENST00000477537 KRTAP10-7P60409 375 aaPredicted RBP4.34□□□□□ -1.71
HLA-DMB-260ENST00000477537 KRTAP8-1Q8IUC2 63 aa4.33□□□□□ -1.72
HLA-DMB-260ENST00000477537 SPRR5A0A1B0GTR4 108 aa4.28□□□□□ -1.72
HLA-DMB-260ENST00000477537 FCGBPQ9Y6R7 5405 aaPredicted RBP4.27□□□□□ -1.73
HLA-DMB-260ENST00000477537 CRCT1Q9UGL9 99 aa4.26□□□□□ -1.73
HLA-DMB-260ENST00000477537 KRTAP12-3P60328 96 aa4.25□□□□□ -1.73
HLA-DMB-260ENST00000477537 KRTAP19-6Q3LI70 58 aa4.21□□□□□ -1.74
HLA-DMB-260ENST00000477537 MACF1Q9UPN3 7388 aaKnown RBP4.17□□□□□ -1.74
HLA-DMB-260ENST00000477537 KMT2DO14686 5537 aa4.17□□□□□ -1.74
HLA-DMB-260ENST00000477537 KRTAP19-5Q3LI72 72 aa4.15□□□□□ -1.75
HLA-DMB-260ENST00000477537 SYNE2Q8WXH0 6885 aaKnown RBP4.08□□□□□ -1.76
HLA-DMB-260ENST00000477537 KRTAP19-7Q3SYF9 63 aa3.99□□□□□ -1.77
HLA-DMB-260ENST00000477537 LCE3CQ5T5A8 94 aa3.99□□□□□ -1.77
HLA-DMB-260ENST00000477537 MT1EP04732 61 aa3.91□□□□□ -1.78
HLA-DMB-260ENST00000477537 MUC12Q9UKN1 5478 aa3.89□□□□□ -1.79
HLA-DMB-260ENST00000477537 INE1O15225 51 aa3.88□□□□□ -1.79
HLA-DMB-260ENST00000477537 MT1LQ93083 61 aa3.87□□□□□ -1.79
HLA-DMB-260ENST00000477537 MDN1Q9NU22 5596 aa3.84□□□□□ -1.79
HLA-DMB-260ENST00000477537 KRTAP9-6A8MVA2 160 aa3.82□□□□□ -1.8
HLA-DMB-260ENST00000477537 SPRR2FQ96RM1 72 aa3.78□□□□□ -1.81
HLA-DMB-260ENST00000477537 KRTAP6-3Q3LI67 103 aa3.76□□□□□ -1.81
HLA-DMB-260ENST00000477537 KRTAP5-9P26371 169 aa3.74□□□□□ -1.81
HLA-DMB-260ENST00000477537 KRTAP19-3Q7Z4W3 81 aa3.68□□□□□ -1.82
HLA-DMB-260ENST00000477537 KRTAP4-3Q9BYR4 195 aa3.67□□□□□ -1.82
HLA-DMB-260ENST00000477537 NEBP20929 6669 aa3.67□□□□□ -1.82
HLA-DMB-260ENST00000477537 MT1GP13640 62 aa3.66□□□□□ -1.82
HLA-DMB-260ENST00000477537 MT1MQ8N339 61 aa3.66□□□□□ -1.82
HLA-DMB-260ENST00000477537 DSTQ03001 7570 aaKnown RBP3.64□□□□□ -1.83
HLA-DMB-260ENST00000477537 KRTAP2-3P0C7H8 128 aa3.62□□□□□ -1.83
HLA-DMB-260ENST00000477537 SPRR2EP22531 72 aa3.62□□□□□ -1.83
HLA-DMB-260ENST00000477537 SPRR2BP35325 72 aa3.62□□□□□ -1.83
HLA-DMB-260ENST00000477537 SPRR2AP35326 72 aa3.62□□□□□ -1.83
HLA-DMB-260ENST00000477537 KRTAP2-4Q9BYR9 128 aa3.62□□□□□ -1.83
HLA-DMB-260ENST00000477537 KRTAP2-1Q9BYU5 128 aa3.62□□□□□ -1.83
HLA-DMB-260ENST00000477537 LCE1AQ5T7P2 110 aa3.62□□□□□ -1.83
HLA-DMB-260ENST00000477537 GPR98Q8WXG9 6306 aa3.51□□□□□ -1.85
HLA-DMB-260ENST00000477537 SPRR2DP22532 72 aa3.48□□□□□ -1.85
HLA-DMB-260ENST00000477537 KRTAP20-1Q3LI63 56 aa3.34□□□□□ -1.88
HLA-DMB-260ENST00000477537 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.31□□□□□ -1.88
HLA-DMB-260ENST00000477537 KRTAP6-1Q3LI64 71 aa3.28□□□□□ -1.88
HLA-DMB-260ENST00000477537 MT1AP04731 61 aa3.27□□□□□ -1.89
HLA-DMB-260ENST00000477537 KRTAP5-5Q701N2 237 aaPredicted RBP3.25□□□□□ -1.89
HLA-DMB-260ENST00000477537 KRTAP2-2Q9BYT5 123 aa3.25□□□□□ -1.89
HLA-DMB-260ENST00000477537 KRTAP5-11Q6L8G4 156 aa3.23□□□□□ -1.89
HLA-DMB-260ENST00000477537 SYNE1Q8NF91 8797 aaKnown RBP3.16□□□□□ -1.9
HLA-DMB-260ENST00000477537 KRTAP12-4P60329 112 aa3.15□□□□□ -1.9
HLA-DMB-260ENST00000477537 LCE1EQ5T753 118 aa3.13□□□□□ -1.91
HLA-DMB-260ENST00000477537 MT4P47944 62 aa3.08□□□□□ -1.92
HLA-DMB-260ENST00000477537 HMCN1Q96RW7 5635 aa3.08□□□□□ -1.92
HLA-DMB-260ENST00000477537 KRTAP5-4Q6L8H1 288 aa3.07□□□□□ -1.92
HLA-DMB-260ENST00000477537 LCE3DQ9BYE3 92 aa3.04□□□□□ -1.92
HLA-DMB-260ENST00000477537 LCE3EQ5T5B0 92 aa2.99□□□□□ -1.93
HLA-DMB-260ENST00000477537 KRTAP6-2Q3LI66 62 aa2.97□□□□□ -1.93
HLA-DMB-260ENST00000477537 MT3P25713 68 aa2.97□□□□□ -1.93
HLA-DMB-260ENST00000477537 KRTAP20-2Q3LI61 65 aa2.91□□□□□ -1.94
HLA-DMB-260ENST00000477537 AHNAK2Q8IVF2 5795 aa2.88□□□□□ -1.95
HLA-DMB-260ENST00000477537 OBSCNQ5VST9 7968 aa2.87□□□□□ -1.95
HLA-DMB-260ENST00000477537 KRTAP5-1Q6L8H4 278 aa2.84□□□□□ -1.95
HLA-DMB-260ENST00000477537 PRM1P04553 51 aa2.78□□□□□ -1.97
HLA-DMB-260ENST00000477537 KRTAP5-2Q701N4 177 aa2.76□□□□□ -1.97
HLA-DMB-260ENST00000477537 KRTAP4-4Q9BYR3 166 aa2.72□□□□□ -1.97
HLA-DMB-260ENST00000477537 AHNAKQ09666 5890 aaKnown RBP2.72□□□□□ -1.97
HLA-DMB-260ENST00000477537 MUC5BQ9HC84 5762 aaPredicted RBP2.7□□□□□ -1.98
HLA-DMB-260ENST00000477537 KRTAP5-7Q6L8G8 165 aa2.67□□□□□ -1.98
HLA-DMB-260ENST00000477537 KRTAP5-10Q6L8G5 202 aa2.61□□□□□ -1.99
HLA-DMB-260ENST00000477537 LCE1FQ5T754 118 aa2.51□□□□□ -2.01
HLA-DMB-260ENST00000477537 KRTAP5-8O75690 187 aa2.48□□□□□ -2.01
HLA-DMB-260ENST00000477537 MUC5ACP98088 5654 aa2.46□□□□□ -2.02
HLA-DMB-260ENST00000477537 LCE1BQ5T7P3 118 aa2.4□□□□□ -2.03
HLA-DMB-260ENST00000477537 LCE1CQ5T751 118 aa2.3□□□□□ -2.04
HLA-DMB-260ENST00000477537 KRTAP21-2Q3LI59 83 aa2.12□□□□□ -2.07
HLA-DMB-260ENST00000477537 PHGR1C9JFL3 82 aa1.74□□□□□ -2.13
HLA-DMB-260ENST00000477537 KRTAP21-1Q3LI58 79 aa1.74□□□□□ -2.13
HLA-DMB-260ENST00000477537 MUC19Q7Z5P9 8384 aa1.73□□□□□ -2.13
HLA-DMB-260ENST00000477537 MUC16Q8WXI7 14507 aa1.19□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 52.4 ms