RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 SPRR2GQ9BYE4 73 aa1.92□□□□□ -2.1
CCDC39-204ENST00000476379 MT1XP80297 61 aa1.89□□□□□ -2.11
CCDC39-204ENST00000476379 KRTAP10-5P60370 271 aa1.88□□□□□ -2.11
CCDC39-204ENST00000476379 KRTAP9-6A0A140TA67 174 aa1.85□□□□□ -2.11
CCDC39-204ENST00000476379 SPRR2FQ96RM1 72 aa1.84□□□□□ -2.12
CCDC39-204ENST00000476379 KRTAP8-1Q8IUC2 63 aa1.83□□□□□ -2.12
CCDC39-204ENST00000476379 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.82□□□□□ -2.12
CCDC39-204ENST00000476379 KRTAP19-4Q3LI73 84 aa1.82□□□□□ -2.12
CCDC39-204ENST00000476379 KRTAP19-8Q3LI54 63 aa1.81□□□□□ -2.12
CCDC39-204ENST00000476379 KRTAP4-12Q9BQ66 201 aa1.81□□□□□ -2.12
CCDC39-204ENST00000476379 KRTAP4-3Q9BYR4 195 aa1.8□□□□□ -2.12
CCDC39-204ENST00000476379 LCE3CQ5T5A8 94 aa1.8□□□□□ -2.12
CCDC39-204ENST00000476379 KRTAP4-2Q9BYR5 136 aa1.8□□□□□ -2.12
CCDC39-204ENST00000476379 MT1GP13640 62 aa1.78□□□□□ -2.12
CCDC39-204ENST00000476379 MT3P25713 68 aa1.77□□□□□ -2.13
CCDC39-204ENST00000476379 SPRR5A0A1B0GTR4 108 aa1.76□□□□□ -2.13
CCDC39-204ENST00000476379 KRTAP9-9Q9BYP9 154 aa1.75□□□□□ -2.13
CCDC39-204ENST00000476379 KRTAP9-4Q9BYQ2 154 aa1.75□□□□□ -2.13
CCDC39-204ENST00000476379 KRTAP19-6Q3LI70 58 aa1.74□□□□□ -2.13
CCDC39-204ENST00000476379 LCE3BQ5TA77 95 aa1.74□□□□□ -2.13
CCDC39-204ENST00000476379 MUC5BQ9HC84 5762 aaPredicted RBP1.73□□□□□ -2.13
CCDC39-204ENST00000476379 KRTAP9-6A8MVA2 160 aa1.73□□□□□ -2.13
CCDC39-204ENST00000476379 KRTAP9-7A8MTY7 169 aa1.72□□□□□ -2.13
CCDC39-204ENST00000476379 SPRR2EP22531 72 aa1.71□□□□□ -2.14
CCDC39-204ENST00000476379 SPRR2BP35325 72 aa1.71□□□□□ -2.14
CCDC39-204ENST00000476379 SPRR2AP35326 72 aa1.71□□□□□ -2.14
CCDC39-204ENST00000476379 KRTAP4-9Q9BYQ8 210 aa1.71□□□□□ -2.14
CCDC39-204ENST00000476379 KRTAP12-4P60329 112 aa1.67□□□□□ -2.14
CCDC39-204ENST00000476379 KRTAP19-7Q3SYF9 63 aa1.67□□□□□ -2.14
CCDC39-204ENST00000476379 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.66□□□□□ -2.14
CCDC39-204ENST00000476379 NEBP20929 6669 aa1.65□□□□□ -2.15
CCDC39-204ENST00000476379 MUC19Q7Z5P9 8384 aa1.65□□□□□ -2.15
CCDC39-204ENST00000476379 MT1LQ93083 61 aa1.64□□□□□ -2.15
CCDC39-204ENST00000476379 MT1EP04732 61 aa1.63□□□□□ -2.15
CCDC39-204ENST00000476379 SPRR2DP22532 72 aa1.62□□□□□ -2.15
CCDC39-204ENST00000476379 KRTAP5-9P26371 169 aa1.6□□□□□ -2.15
CCDC39-204ENST00000476379 LCE1AQ5T7P2 110 aa1.6□□□□□ -2.15
CCDC39-204ENST00000476379 MT4P47944 62 aa1.58□□□□□ -2.16
CCDC39-204ENST00000476379 KRTAP19-3Q7Z4W3 81 aa1.57□□□□□ -2.16
CCDC39-204ENST00000476379 MT1MQ8N339 61 aa1.55□□□□□ -2.16
CCDC39-204ENST00000476379 KRTAP6-3Q3LI67 103 aa1.53□□□□□ -2.16
CCDC39-204ENST00000476379 LCE5AQ5TCM9 118 aa1.5□□□□□ -2.17
CCDC39-204ENST00000476379 LCE3DQ9BYE3 92 aa1.5□□□□□ -2.17
CCDC39-204ENST00000476379 PRM1P04553 51 aa1.49□□□□□ -2.17
CCDC39-204ENST00000476379 KRTAP2-3P0C7H8 128 aa1.49□□□□□ -2.17
CCDC39-204ENST00000476379 KRTAP2-4Q9BYR9 128 aa1.49□□□□□ -2.17
CCDC39-204ENST00000476379 KRTAP2-1Q9BYU5 128 aa1.49□□□□□ -2.17
CCDC39-204ENST00000476379 KRTAP4-11Q9BYQ6 195 aa1.48□□□□□ -2.17
CCDC39-204ENST00000476379 KRTAP6-1Q3LI64 71 aa1.48□□□□□ -2.17
CCDC39-204ENST00000476379 KRTAP20-1Q3LI63 56 aa1.47□□□□□ -2.17
CCDC39-204ENST00000476379 LCE1DQ5T752 114 aa1.46□□□□□ -2.18
CCDC39-204ENST00000476379 LCE3EQ5T5B0 92 aa1.45□□□□□ -2.18
CCDC39-204ENST00000476379 KRTAP5-2Q701N4 177 aa1.39□□□□□ -2.19
CCDC39-204ENST00000476379 LCE4AQ5TA78 99 aa1.38□□□□□ -2.19
CCDC39-204ENST00000476379 KRTAP6-2Q3LI66 62 aa1.38□□□□□ -2.19
CCDC39-204ENST00000476379 GPR98Q8WXG9 6306 aa1.38□□□□□ -2.19
CCDC39-204ENST00000476379 MUC5ACP98088 5654 aa1.37□□□□□ -2.19
CCDC39-204ENST00000476379 KRTAP2-2Q9BYT5 123 aa1.37□□□□□ -2.19
CCDC39-204ENST00000476379 KRTAP5-5Q701N2 237 aaPredicted RBP1.37□□□□□ -2.19
CCDC39-204ENST00000476379 KRTAP5-8O75690 187 aa1.36□□□□□ -2.19
CCDC39-204ENST00000476379 LCE1BQ5T7P3 118 aa1.36□□□□□ -2.19
CCDC39-204ENST00000476379 LCE1EQ5T753 118 aa1.35□□□□□ -2.19
CCDC39-204ENST00000476379 MT1AP04731 61 aa1.34□□□□□ -2.2
CCDC39-204ENST00000476379 LCE1FQ5T754 118 aa1.33□□□□□ -2.2
CCDC39-204ENST00000476379 KRTAP5-4Q6L8H1 288 aa1.31□□□□□ -2.2
CCDC39-204ENST00000476379 AHNAK2Q8IVF2 5795 aa1.3□□□□□ -2.2
CCDC39-204ENST00000476379 KRTAP20-2Q3LI61 65 aa1.27□□□□□ -2.21
CCDC39-204ENST00000476379 KRTAP4-4Q9BYR3 166 aa1.16□□□□□ -2.22
CCDC39-204ENST00000476379 KRTAP5-11Q6L8G4 156 aa1.07□□□□□ -2.24
CCDC39-204ENST00000476379 KRTAP5-10Q6L8G5 202 aa1.06□□□□□ -2.24
CCDC39-204ENST00000476379 AHNAKQ09666 5890 aaKnown RBP1.02□□□□□ -2.25
CCDC39-204ENST00000476379 LCE1CQ5T751 118 aa1.01□□□□□ -2.25
CCDC39-204ENST00000476379 KRTAP5-1Q6L8H4 278 aa1.01□□□□□ -2.25
CCDC39-204ENST00000476379 KRTAP5-7Q6L8G8 165 aa0.98□□□□□ -2.25
CCDC39-204ENST00000476379 KRTAP21-2Q3LI59 83 aa0.84□□□□□ -2.27
CCDC39-204ENST00000476379 PHGR1C9JFL3 82 aa0.76□□□□□ -2.29
CCDC39-204ENST00000476379 KRTAP21-1Q3LI58 79 aa0.67□□□□□ -2.3
CCDC39-204ENST00000476379 MUC16Q8WXI7 14507 aa0.57□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 43.2 ms