RNA–Protein interactions for RNA: ENST00000476045.5

VPS13D-206, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 380 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-206ENST00000476045 FCGBPQ9Y6R7 5405 aaPredicted RBP2.04□□□□□ -2.08
VPS13D-206ENST00000476045 K7ERS5 55 aa2.03□□□□□ -2.08
VPS13D-206ENST00000476045 MT1FP04733 61 aa2.03□□□□□ -2.08
VPS13D-206ENST00000476045 KRTAP10-10P60014 251 aa2.03□□□□□ -2.08
VPS13D-206ENST00000476045 KRTAP5-2Q701N4 177 aa2.03□□□□□ -2.08
VPS13D-206ENST00000476045 CRIPTQ9P021 101 aa2.03□□□□□ -2.08
VPS13D-206ENST00000476045 S4R3F8 94 aa2.03□□□□□ -2.08
VPS13D-206ENST00000476045 KRTAP13-4Q3LI77 160 aa2.02□□□□□ -2.09
VPS13D-206ENST00000476045 KRTAP25-1Q3LHN0 102 aa2.01□□□□□ -2.09
VPS13D-206ENST00000476045 P0C880 135 aa2□□□□□ -2.09
VPS13D-206ENST00000476045 ROMO1P60602 79 aa1.99□□□□□ -2.09
VPS13D-206ENST00000476045 KRTAP19-6Q3LI70 58 aa1.99□□□□□ -2.09
VPS13D-206ENST00000476045 SYNE2Q8WXH0 6885 aaKnown RBP1.99□□□□□ -2.09
VPS13D-206ENST00000476045 SPINT4Q6UDR6 99 aa1.96□□□□□ -2.1
VPS13D-206ENST00000476045 C10orf95Q9H7T3 257 aa1.95□□□□□ -2.1
VPS13D-206ENST00000476045 KRTAP12-1P59990 96 aa1.93□□□□□ -2.1
VPS13D-206ENST00000476045 KRTAP6-3Q3LI67 103 aa1.92□□□□□ -2.1
VPS13D-206ENST00000476045 NEBP20929 6669 aa1.92□□□□□ -2.1
VPS13D-206ENST00000476045 M0QZ58 72 aa1.91□□□□□ -2.1
VPS13D-206ENST00000476045 LUZP6Q538Z0 58 aa1.91□□□□□ -2.1
VPS13D-206ENST00000476045 LCE1CQ5T751 118 aa1.91□□□□□ -2.1
VPS13D-206ENST00000476045 LCE1BQ5T7P3 118 aa1.91□□□□□ -2.1
VPS13D-206ENST00000476045 SPRR2GQ9BYE4 73 aa1.89□□□□□ -2.11
VPS13D-206ENST00000476045 KRTAP19-8Q3LI54 63 aa1.88□□□□□ -2.11
VPS13D-206ENST00000476045 R4GN34 69 aa1.87□□□□□ -2.11
VPS13D-206ENST00000476045 MUC12Q9UKN1 5478 aa1.85□□□□□ -2.11
VPS13D-206ENST00000476045 MT1BP07438 61 aa1.85□□□□□ -2.11
VPS13D-206ENST00000476045 PRO2289Q9P1D8 64 aa1.83□□□□□ -2.12
VPS13D-206ENST00000476045 KMT2DO14686 5537 aa1.82□□□□□ -2.12
VPS13D-206ENST00000476045 MDN1Q9NU22 5596 aa1.82□□□□□ -2.12
VPS13D-206ENST00000476045 KRTAP20-1Q3LI63 56 aa1.8□□□□□ -2.12
VPS13D-206ENST00000476045 LCE3DQ9BYE3 92 aa1.77□□□□□ -2.13
VPS13D-206ENST00000476045 PLAC4Q8WY50 150 aa1.76□□□□□ -2.13
VPS13D-206ENST00000476045 SPRR2FQ96RM1 72 aa1.74□□□□□ -2.13
VPS13D-206ENST00000476045 KRTAP2-3P0C7H8 128 aa1.73□□□□□ -2.13
VPS13D-206ENST00000476045 MT1XP80297 61 aa1.73□□□□□ -2.13
VPS13D-206ENST00000476045 KRTAP8-1Q8IUC2 63 aa1.73□□□□□ -2.13
VPS13D-206ENST00000476045 KRTAP2-4Q9BYR9 128 aa1.73□□□□□ -2.13
VPS13D-206ENST00000476045 TNP1P09430 55 aa1.72□□□□□ -2.13
VPS13D-206ENST00000476045 SPRR2EP22531 72 aa1.72□□□□□ -2.13
VPS13D-206ENST00000476045 SPRR2BP35325 72 aa1.72□□□□□ -2.13
VPS13D-206ENST00000476045 SPRR2AP35326 72 aa1.72□□□□□ -2.13
VPS13D-206ENST00000476045 PP632Q6XCG6 107 aa1.72□□□□□ -2.13
VPS13D-206ENST00000476045 SPRR2DP22532 72 aa1.68□□□□□ -2.14
VPS13D-206ENST00000476045 KRTAP2-1Q9BYU5 128 aa1.67□□□□□ -2.14
VPS13D-206ENST00000476045 KRTAP5-8O75690 187 aa1.65□□□□□ -2.15
VPS13D-206ENST00000476045 SPRR5A0A1B0GTR4 108 aa1.64□□□□□ -2.15
VPS13D-206ENST00000476045 GPR98Q8WXG9 6306 aa1.63□□□□□ -2.15
VPS13D-206ENST00000476045 KRTAP5-7Q6L8G8 165 aa1.6□□□□□ -2.15
VPS13D-206ENST00000476045 DSTQ03001 7570 aaKnown RBP1.58□□□□□ -2.16
VPS13D-206ENST00000476045 KRTAP19-3Q7Z4W3 81 aa1.56□□□□□ -2.16
VPS13D-206ENST00000476045 MT1EP04732 61 aa1.55□□□□□ -2.16
VPS13D-206ENST00000476045 KRTAP12-3P60328 96 aa1.54□□□□□ -2.16
VPS13D-206ENST00000476045 KRTAP19-7Q3SYF9 63 aa1.54□□□□□ -2.16
VPS13D-206ENST00000476045 HMCN1Q96RW7 5635 aa1.53□□□□□ -2.16
VPS13D-206ENST00000476045 MUC19Q7Z5P9 8384 aa1.52□□□□□ -2.17
VPS13D-206ENST00000476045 MT1GP13640 62 aa1.52□□□□□ -2.17
VPS13D-206ENST00000476045 KRTAP19-5Q3LI72 72 aa1.5□□□□□ -2.17
VPS13D-206ENST00000476045 AHNAK2Q8IVF2 5795 aa1.49□□□□□ -2.17
VPS13D-206ENST00000476045 MT1MQ8N339 61 aa1.48□□□□□ -2.17
VPS13D-206ENST00000476045 MT1LQ93083 61 aa1.47□□□□□ -2.17
VPS13D-206ENST00000476045 INE1O15225 51 aa1.43□□□□□ -2.18
VPS13D-206ENST00000476045 MT4P47944 62 aa1.43□□□□□ -2.18
VPS13D-206ENST00000476045 KRTAP5-10Q6L8G5 202 aa1.4□□□□□ -2.19
VPS13D-206ENST00000476045 KRTAP12-4P60329 112 aa1.37□□□□□ -2.19
VPS13D-206ENST00000476045 KRTAP21-2Q3LI59 83 aa1.37□□□□□ -2.19
VPS13D-206ENST00000476045 KRTAP20-2Q3LI61 65 aa1.36□□□□□ -2.19
VPS13D-206ENST00000476045 SYNE1Q8NF91 8797 aaKnown RBP1.33□□□□□ -2.2
VPS13D-206ENST00000476045 AHNAKQ09666 5890 aaKnown RBP1.3□□□□□ -2.2
VPS13D-206ENST00000476045 MT1AP04731 61 aa1.27□□□□□ -2.21
VPS13D-206ENST00000476045 MUC5BQ9HC84 5762 aaPredicted RBP1.25□□□□□ -2.21
VPS13D-206ENST00000476045 MUC5ACP98088 5654 aa1.24□□□□□ -2.21
VPS13D-206ENST00000476045 KRTAP6-1Q3LI64 71 aa1.22□□□□□ -2.21
VPS13D-206ENST00000476045 KRTAP6-2Q3LI66 62 aa1.18□□□□□ -2.22
VPS13D-206ENST00000476045 PRM1P04553 51 aa1.08□□□□□ -2.24
VPS13D-206ENST00000476045 PHGR1C9JFL3 82 aa0.81□□□□□ -2.28
VPS13D-206ENST00000476045 MUC16Q8WXI7 14507 aa0.71□□□□□ -2.3
VPS13D-206ENST00000476045 KRTAP21-1Q3LI58 79 aa0.66□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 80.5 ms