RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 KRTAP5-4Q6L8H1 288 aa3.13□□□□□ -1.91
USP54-211ENST00000474929 KRTAP19-3Q7Z4W3 81 aa3.13□□□□□ -1.91
USP54-211ENST00000474929 PMAIP1Q13794 54 aa3.12□□□□□ -1.91
USP54-211ENST00000474929 DMAC1Q96GE9 116 aa3.12□□□□□ -1.91
USP54-211ENST00000474929 KRTAP10-7P60409 375 aaPredicted RBP3.11□□□□□ -1.91
USP54-211ENST00000474929 PRR15LQ9BU68 103 aa3.1□□□□□ -1.91
USP54-211ENST00000474929 CDC42SE1Q9NRR8 79 aa3.1□□□□□ -1.91
USP54-211ENST00000474929 CHKB-CPT1BH3BT56 60 aa3.09□□□□□ -1.91
USP54-211ENST00000474929 PSPHP1O15172 72 aa3.09□□□□□ -1.91
USP54-211ENST00000474929 KRTAP23-1A1A580 65 aa3.07□□□□□ -1.92
USP54-211ENST00000474929 A6NED7 52 aa3.06□□□□□ -1.92
USP54-211ENST00000474929 H0YAA0 97 aa3.06□□□□□ -1.92
USP54-211ENST00000474929 PP632Q6XCG6 107 aa3.06□□□□□ -1.92
USP54-211ENST00000474929 KRTAP5-11Q6L8G4 156 aa3.05□□□□□ -1.92
USP54-211ENST00000474929 SPTSSBQ8NFR3 76 aa3.05□□□□□ -1.92
USP54-211ENST00000474929 KTN1-AS1Q86SY8 53 aa3.02□□□□□ -1.93
USP54-211ENST00000474929 A0A1B0GU69 56 aa3.01□□□□□ -1.93
USP54-211ENST00000474929 UQCR11O14957 56 aa3□□□□□ -1.93
USP54-211ENST00000474929 MT1GP13640 62 aa3□□□□□ -1.93
USP54-211ENST00000474929 KRTAP20-2Q3LI61 65 aa3□□□□□ -1.93
USP54-211ENST00000474929 SPATA8Q6RVD6 105 aa3□□□□□ -1.93
USP54-211ENST00000474929 MT1EP04732 61 aa2.99□□□□□ -1.93
USP54-211ENST00000474929 ADM2Q7Z4H4 148 aa2.99□□□□□ -1.93
USP54-211ENST00000474929 R4GN34 69 aa2.98□□□□□ -1.93
USP54-211ENST00000474929 KRTAP19-7Q3SYF9 63 aa2.96□□□□□ -1.94
USP54-211ENST00000474929 MIR22HGQ0VDD5 57 aa2.94□□□□□ -1.94
USP54-211ENST00000474929 A8MU10 97 aa2.93□□□□□ -1.94
USP54-211ENST00000474929 P0C880 135 aa2.92□□□□□ -1.94
USP54-211ENST00000474929 MT1MQ8N339 61 aa2.89□□□□□ -1.95
USP54-211ENST00000474929 M0QZ58 72 aa2.88□□□□□ -1.95
USP54-211ENST00000474929 KRTAP12-4P60329 112 aa2.88□□□□□ -1.95
USP54-211ENST00000474929 LINC01554Q52M75 96 aa2.87□□□□□ -1.95
USP54-211ENST00000474929 A0A1B0GU33 70 aa2.85□□□□□ -1.95
USP54-211ENST00000474929 K7ERS5 55 aa2.85□□□□□ -1.95
USP54-211ENST00000474929 KRTAP5-8O75690 187 aa2.83□□□□□ -1.96
USP54-211ENST00000474929 KRTAP5-1Q6L8H4 278 aa2.81□□□□□ -1.96
USP54-211ENST00000474929 PRAC1Q96KF2 57 aa2.77□□□□□ -1.97
USP54-211ENST00000474929 MT1LQ93083 61 aa2.75□□□□□ -1.97
USP54-211ENST00000474929 KRTAP13-4Q3LI77 160 aa2.74□□□□□ -1.97
USP54-211ENST00000474929 CAMK2N1Q7Z7J9 78 aa2.74□□□□□ -1.97
USP54-211ENST00000474929 KRTAP4-4Q9BYR3 166 aa2.74□□□□□ -1.97
USP54-211ENST00000474929 KRTAP4-3Q9BYR4 195 aa2.74□□□□□ -1.97
USP54-211ENST00000474929 KRTAP25-1Q3LHN0 102 aa2.72□□□□□ -1.97
USP54-211ENST00000474929 KRTAP19-5Q3LI72 72 aa2.72□□□□□ -1.97
USP54-211ENST00000474929 A0A0D9SG42 100 aa2.71□□□□□ -1.98
USP54-211ENST00000474929 KRTAP5-5Q701N2 237 aaPredicted RBP2.71□□□□□ -1.98
USP54-211ENST00000474929 ROMO1P60602 79 aa2.7□□□□□ -1.98
USP54-211ENST00000474929 SYNE1Q8NF91 8797 aaKnown RBP2.69□□□□□ -1.98
USP54-211ENST00000474929 KRTAP5-2Q701N4 177 aa2.68□□□□□ -1.98
USP54-211ENST00000474929 OBSCNQ5VST9 7968 aa2.67□□□□□ -1.98
USP54-211ENST00000474929 SPINT4Q6UDR6 99 aa2.67□□□□□ -1.98
USP54-211ENST00000474929 KRTAP12-1P59990 96 aa2.61□□□□□ -1.99
USP54-211ENST00000474929 KRTAP15-1Q3LI76 137 aa2.61□□□□□ -1.99
USP54-211ENST00000474929 LUZP6Q538Z0 58 aa2.6□□□□□ -1.99
USP54-211ENST00000474929 LCE1EQ5T753 118 aa2.6□□□□□ -1.99
USP54-211ENST00000474929 NDUFAF8A1L188 74 aa2.53□□□□□ -2
USP54-211ENST00000474929 C10orf95Q9H7T3 257 aa2.51□□□□□ -2.01
USP54-211ENST00000474929 TNP1P09430 55 aa2.47□□□□□ -2.01
USP54-211ENST00000474929 LCE3AQ5TA76 89 aa2.45□□□□□ -2.02
USP54-211ENST00000474929 MT1AP04731 61 aa2.36□□□□□ -2.03
USP54-211ENST00000474929 KRTAP12-3P60328 96 aa2.35□□□□□ -2.03
USP54-211ENST00000474929 KRTAP6-2Q3LI66 62 aa2.35□□□□□ -2.03
USP54-211ENST00000474929 KRTAP6-1Q3LI64 71 aa2.32□□□□□ -2.04
USP54-211ENST00000474929 MT3P25713 68 aa2.22□□□□□ -2.05
USP54-211ENST00000474929 KRTAP9-6A8MVA2 160 aa2.21□□□□□ -2.06
USP54-211ENST00000474929 LCE3CQ5T5A8 94 aa2.17□□□□□ -2.06
USP54-211ENST00000474929 PHGR1C9JFL3 82 aa2.12□□□□□ -2.07
USP54-211ENST00000474929 INE1O15225 51 aa2.07□□□□□ -2.08
USP54-211ENST00000474929 LCE1BQ5T7P3 118 aa2.05□□□□□ -2.08
USP54-211ENST00000474929 LCE1FQ5T754 118 aa2.04□□□□□ -2.08
USP54-211ENST00000474929 LCE1CQ5T751 118 aa2.03□□□□□ -2.08
USP54-211ENST00000474929 KRTAP21-1Q3LI58 79 aa1.66□□□□□ -2.14
USP54-211ENST00000474929 MUC19Q7Z5P9 8384 aa1.63□□□□□ -2.15
USP54-211ENST00000474929 LCE3DQ9BYE3 92 aa1.58□□□□□ -2.16
USP54-211ENST00000474929 LCE3EQ5T5B0 92 aa1.54□□□□□ -2.16
USP54-211ENST00000474929 KRTAP21-2Q3LI59 83 aa1.53□□□□□ -2.16
USP54-211ENST00000474929 PRM1P04553 51 aa1.37□□□□□ -2.19
USP54-211ENST00000474929 MUC16Q8WXI7 14507 aa1.19□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 5.8 ms