RNA–Protein interactions for RNA: ENST00000474871.5

NPHP3-206, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 4,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-206ENST00000474871 MT1HP80294 61 aa1.88□□□□□ -2.11
NPHP3-206ENST00000474871 LCE3CQ5T5A8 94 aa1.87□□□□□ -2.11
NPHP3-206ENST00000474871 FAT4Q6V0I7 4981 aa1.87□□□□□ -2.11
NPHP3-206ENST00000474871 KRTAP12-3P60328 96 aa1.87□□□□□ -2.11
NPHP3-206ENST00000474871 KRTAP2-3P0C7H8 128 aa1.83□□□□□ -2.12
NPHP3-206ENST00000474871 KRTAP2-4Q9BYR9 128 aa1.83□□□□□ -2.12
NPHP3-206ENST00000474871 KRTAP2-1Q9BYU5 128 aa1.83□□□□□ -2.12
NPHP3-206ENST00000474871 MT2AP02795 61 aa1.81□□□□□ -2.12
NPHP3-206ENST00000474871 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.81□□□□□ -2.12
NPHP3-206ENST00000474871 MT1FP04733 61 aa1.8□□□□□ -2.12
NPHP3-206ENST00000474871 OBSCNQ5VST9 7968 aa1.8□□□□□ -2.12
NPHP3-206ENST00000474871 SPRR2GQ9BYE4 73 aa1.8□□□□□ -2.12
NPHP3-206ENST00000474871 KRTAP12-4P60329 112 aa1.79□□□□□ -2.12
NPHP3-206ENST00000474871 KRTAP10-7P60409 375 aaPredicted RBP1.78□□□□□ -2.12
NPHP3-206ENST00000474871 LCE3EQ5T5B0 92 aa1.75□□□□□ -2.13
NPHP3-206ENST00000474871 LCE3AQ5TA76 89 aa1.75□□□□□ -2.13
NPHP3-206ENST00000474871 SPRR2FQ96RM1 72 aa1.75□□□□□ -2.13
NPHP3-206ENST00000474871 KRTAP19-8Q3LI54 63 aa1.74□□□□□ -2.13
NPHP3-206ENST00000474871 KRTAP10-5P60370 271 aa1.74□□□□□ -2.13
NPHP3-206ENST00000474871 KRTAP19-6Q3LI70 58 aa1.72□□□□□ -2.13
NPHP3-206ENST00000474871 KRTAP5-2Q701N4 177 aa1.72□□□□□ -2.13
NPHP3-206ENST00000474871 MT1BP07438 61 aa1.72□□□□□ -2.13
NPHP3-206ENST00000474871 KRTAP9-6A8MVA2 160 aa1.69□□□□□ -2.14
NPHP3-206ENST00000474871 MUC19Q7Z5P9 8384 aa1.68□□□□□ -2.14
NPHP3-206ENST00000474871 MT1XP80297 61 aa1.68□□□□□ -2.14
NPHP3-206ENST00000474871 SYNE1Q8NF91 8797 aaKnown RBP1.68□□□□□ -2.14
NPHP3-206ENST00000474871 SPRR2EP22531 72 aa1.67□□□□□ -2.14
NPHP3-206ENST00000474871 SPRR2BP35325 72 aa1.67□□□□□ -2.14
NPHP3-206ENST00000474871 SPRR2AP35326 72 aa1.67□□□□□ -2.14
NPHP3-206ENST00000474871 KRTAP20-1Q3LI63 56 aa1.65□□□□□ -2.14
NPHP3-206ENST00000474871 USH2AO75445 5202 aa1.64□□□□□ -2.15
NPHP3-206ENST00000474871 SPRR2DP22532 72 aa1.64□□□□□ -2.15
NPHP3-206ENST00000474871 LCE3DQ9BYE3 92 aa1.61□□□□□ -2.15
NPHP3-206ENST00000474871 SSPOA2VEC9 5147 aa1.61□□□□□ -2.15
NPHP3-206ENST00000474871 MT3P25713 68 aa1.6□□□□□ -2.15
NPHP3-206ENST00000474871 KRTAP19-5Q3LI72 72 aa1.6□□□□□ -2.15
NPHP3-206ENST00000474871 KRTAP5-5Q701N2 237 aaPredicted RBP1.6□□□□□ -2.15
NPHP3-206ENST00000474871 MT1GP13640 62 aa1.59□□□□□ -2.16
NPHP3-206ENST00000474871 KRTAP5-9P26371 169 aa1.57□□□□□ -2.16
NPHP3-206ENST00000474871 KRTAP5-11Q6L8G4 156 aa1.56□□□□□ -2.16
NPHP3-206ENST00000474871 KMT2DO14686 5537 aa1.54□□□□□ -2.16
NPHP3-206ENST00000474871 FSIP2Q5CZC0 6907 aa1.51□□□□□ -2.17
NPHP3-206ENST00000474871 KRTAP19-7Q3SYF9 63 aa1.5□□□□□ -2.17
NPHP3-206ENST00000474871 KRTAP19-3Q7Z4W3 81 aa1.48□□□□□ -2.17
NPHP3-206ENST00000474871 FCGBPQ9Y6R7 5405 aaPredicted RBP1.48□□□□□ -2.17
NPHP3-206ENST00000474871 MUC5BQ9HC84 5762 aaPredicted RBP1.47□□□□□ -2.17
NPHP3-206ENST00000474871 MT1EP04732 61 aa1.47□□□□□ -2.17
NPHP3-206ENST00000474871 PRM1P04553 51 aa1.46□□□□□ -2.18
NPHP3-206ENST00000474871 NEBP20929 6669 aa1.46□□□□□ -2.18
NPHP3-206ENST00000474871 GPR98Q8WXG9 6306 aa1.45□□□□□ -2.18
NPHP3-206ENST00000474871 MT1LQ93083 61 aa1.44□□□□□ -2.18
NPHP3-206ENST00000474871 KRTAP5-4Q6L8H1 288 aa1.44□□□□□ -2.18
NPHP3-206ENST00000474871 MACF1Q9UPN3 7388 aaKnown RBP1.44□□□□□ -2.18
NPHP3-206ENST00000474871 SYNE2Q8WXH0 6885 aaKnown RBP1.43□□□□□ -2.18
NPHP3-206ENST00000474871 MT4P47944 62 aa1.38□□□□□ -2.19
NPHP3-206ENST00000474871 MT1MQ8N339 61 aa1.38□□□□□ -2.19
NPHP3-206ENST00000474871 MUC12Q9UKN1 5478 aa1.37□□□□□ -2.19
NPHP3-206ENST00000474871 KRTAP4-3Q9BYR4 195 aa1.36□□□□□ -2.19
NPHP3-206ENST00000474871 KRTAP5-1Q6L8H4 278 aa1.34□□□□□ -2.19
NPHP3-206ENST00000474871 MDN1Q9NU22 5596 aa1.32□□□□□ -2.2
NPHP3-206ENST00000474871 DSTQ03001 7570 aaKnown RBP1.31□□□□□ -2.2
NPHP3-206ENST00000474871 MT1AP04731 61 aa1.31□□□□□ -2.2
NPHP3-206ENST00000474871 LCE1BQ5T7P3 118 aa1.31□□□□□ -2.2
NPHP3-206ENST00000474871 LCE1CQ5T751 118 aa1.29□□□□□ -2.2
NPHP3-206ENST00000474871 KRTAP4-4Q9BYR3 166 aa1.28□□□□□ -2.2
NPHP3-206ENST00000474871 KRTAP6-2Q3LI66 62 aa1.27□□□□□ -2.21
NPHP3-206ENST00000474871 KRTAP5-7Q6L8G8 165 aa1.26□□□□□ -2.21
NPHP3-206ENST00000474871 KRTAP6-1Q3LI64 71 aa1.22□□□□□ -2.21
NPHP3-206ENST00000474871 KRTAP5-8O75690 187 aa1.19□□□□□ -2.22
NPHP3-206ENST00000474871 KRTAP5-10Q6L8G5 202 aa1.18□□□□□ -2.22
NPHP3-206ENST00000474871 KRTAP21-1Q3LI58 79 aa1.16□□□□□ -2.22
NPHP3-206ENST00000474871 AHNAKQ09666 5890 aaKnown RBP1.15□□□□□ -2.23
NPHP3-206ENST00000474871 KRTAP20-2Q3LI61 65 aa1.14□□□□□ -2.23
NPHP3-206ENST00000474871 AHNAK2Q8IVF2 5795 aa1.08□□□□□ -2.24
NPHP3-206ENST00000474871 MUC5ACP98088 5654 aa0.95□□□□□ -2.26
NPHP3-206ENST00000474871 KRTAP21-2Q3LI59 83 aa0.8□□□□□ -2.28
NPHP3-206ENST00000474871 PHGR1C9JFL3 82 aa0.76□□□□□ -2.29
NPHP3-206ENST00000474871 MUC16Q8WXI7 14507 aa0.61□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 5.2 ms