RNA–Protein interactions for RNA: ENST00000474543.5

NELFCD-204, Transcript of negative elongation factor complex member C/D, human

TSL 5

Gene NELFCD, Length 2,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NELFCD-204	ENST00000474543	KRTAP4-8	A0A0G2JLE6	195 aa		5.21	□□□□□ -1.57
NELFCD-204	ENST00000474543	KRTAP4-8	Q9BYQ9	185 aa		5.21	□□□□□ -1.57
NELFCD-204	ENST00000474543	KRTAP9-6	A8MVA2	160 aa		5.13	□□□□□ -1.59
NELFCD-204	ENST00000474543	KRTAP19-7	Q3SYF9	63 aa		5.11	□□□□□ -1.59
NELFCD-204	ENST00000474543	KRTAP5-9	P26371	169 aa		5.09	□□□□□ -1.6
NELFCD-204	ENST00000474543	MUC12	Q9UKN1	5478 aa		5.05	□□□□□ -1.6
NELFCD-204	ENST00000474543	SPRR2F	Q96RM1	72 aa		5.04	□□□□□ -1.6
NELFCD-204	ENST00000474543	KRTAP4-7	Q9BYR0	210 aa		5.03	□□□□□ -1.6
NELFCD-204	ENST00000474543	KRTAP2-3	P0C7H8	128 aa		4.97	□□□□□ -1.61
NELFCD-204	ENST00000474543	KRTAP19-4	Q3LI73	84 aa		4.97	□□□□□ -1.61
NELFCD-204	ENST00000474543	KRTAP2-4	Q9BYR9	128 aa		4.97	□□□□□ -1.61
NELFCD-204	ENST00000474543	KRTAP2-1	Q9BYU5	128 aa		4.97	□□□□□ -1.61
NELFCD-204	ENST00000474543	MT1L	Q93083	61 aa		4.96	□□□□□ -1.62
NELFCD-204	ENST00000474543	NEB	P20929	6669 aa		4.95	□□□□□ -1.62
NELFCD-204	ENST00000474543	MT1E	P04732	61 aa		4.94	□□□□□ -1.62
NELFCD-204	ENST00000474543	MDN1	Q9NU22	5596 aa		4.92	□□□□□ -1.62
NELFCD-204	ENST00000474543	SPRR2E	P22531	72 aa		4.9	□□□□□ -1.63
NELFCD-204	ENST00000474543	SPRR2B	P35325	72 aa		4.9	□□□□□ -1.63
NELFCD-204	ENST00000474543	SPRR2A	P35326	72 aa		4.9	□□□□□ -1.63
NELFCD-204	ENST00000474543	LCE1A	Q5T7P2	110 aa		4.85	□□□□□ -1.63
NELFCD-204	ENST00000474543	KRTAP20-1	Q3LI63	56 aa		4.74	□□□□□ -1.65
NELFCD-204	ENST00000474543	SPRR2D	P22532	72 aa		4.73	□□□□□ -1.65
NELFCD-204	ENST00000474543	KRTAP4-3	Q9BYR4	195 aa		4.69	□□□□□ -1.66
NELFCD-204	ENST00000474543	LOC100996750	A0A140TA64	210 aa		4.68	□□□□□ -1.66
NELFCD-204	ENST00000474543	KRTAP19-3	Q7Z4W3	81 aa		4.68	□□□□□ -1.66
NELFCD-204	ENST00000474543	LCE5A	Q5TCM9	118 aa		4.65	□□□□□ -1.67
NELFCD-204	ENST00000474543	MT1G	P13640	62 aa		4.63	□□□□□ -1.67
NELFCD-204	ENST00000474543	MT1M	Q8N339	61 aa		4.62	□□□□□ -1.67
NELFCD-204	ENST00000474543	LCE3B	Q5TA77	95 aa		4.58	□□□□□ -1.68
NELFCD-204	ENST00000474543	KRTAP2-2	Q9BYT5	123 aa		4.55	□□□□□ -1.68
NELFCD-204	ENST00000474543	DST	Q03001	7570 aa	Known RBP	4.48	□□□□□ -1.69
NELFCD-204	ENST00000474543	KRTAP12-4	P60329	112 aa		4.4	□□□□□ -1.7
NELFCD-204	ENST00000474543	KRTAP4-9	Q9BYQ8	210 aa		4.23	□□□□□ -1.73
NELFCD-204	ENST00000474543	MT1A	P04731	61 aa		4.21	□□□□□ -1.74
NELFCD-204	ENST00000474543	KRTAP6-1	Q3LI64	71 aa		4.21	□□□□□ -1.74
NELFCD-204	ENST00000474543	LCE4A	Q5TA78	99 aa		4.18	□□□□□ -1.74
NELFCD-204	ENST00000474543	MT4	P47944	62 aa		4.13	□□□□□ -1.75
NELFCD-204	ENST00000474543	KRTAP5-4	Q6L8H1	288 aa		4.13	□□□□□ -1.75
NELFCD-204	ENST00000474543	LCE1D	Q5T752	114 aa		4.12	□□□□□ -1.75
NELFCD-204	ENST00000474543	SYNE1	Q8NF91	8797 aa	Known RBP	4.11	□□□□□ -1.75
NELFCD-204	ENST00000474543	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.1	□□□□□ -1.75
NELFCD-204	ENST00000474543	LCE3D	Q9BYE3	92 aa		4.08	□□□□□ -1.76
NELFCD-204	ENST00000474543	HMCN1	Q96RW7	5635 aa		4.06	□□□□□ -1.76
NELFCD-204	ENST00000474543	LCE3E	Q5T5B0	92 aa		4.04	□□□□□ -1.76
NELFCD-204	ENST00000474543	KRTAP4-6	Q9BYQ5	205 aa		4.02	□□□□□ -1.77
NELFCD-204	ENST00000474543	KRTAP9-4	Q9BYQ2	154 aa		3.91	□□□□□ -1.78
NELFCD-204	ENST00000474543	KRTAP20-2	Q3LI61	65 aa		3.9	□□□□□ -1.78
NELFCD-204	ENST00000474543	PRM1	P04553	51 aa		3.9	□□□□□ -1.79
NELFCD-204	ENST00000474543	AHNAK2	Q8IVF2	5795 aa		3.8	□□□□□ -1.8
NELFCD-204	ENST00000474543	KRTAP6-2	Q3LI66	62 aa		3.78	□□□□□ -1.8
NELFCD-204	ENST00000474543	GPR98	Q8WXG9	6306 aa		3.78	□□□□□ -1.8
NELFCD-204	ENST00000474543	KRTAP5-3	Q6L8H2	238 aa		3.77	□□□□□ -1.81
NELFCD-204	ENST00000474543	MT3	P25713	68 aa		3.73	□□□□□ -1.81
NELFCD-204	ENST00000474543	KRTAP5-10	Q6L8G5	202 aa		3.67	□□□□□ -1.82
NELFCD-204	ENST00000474543	KRTAP5-2	Q701N4	177 aa		3.66	□□□□□ -1.82
NELFCD-204	ENST00000474543	OBSCN	Q5VST9	7968 aa		3.56	□□□□□ -1.84
NELFCD-204	ENST00000474543	KRTAP4-11	Q9BYQ6	195 aa		3.5	□□□□□ -1.85
NELFCD-204	ENST00000474543	KRTAP5-7	Q6L8G8	165 aa		3.48	□□□□□ -1.85
NELFCD-204	ENST00000474543	KRTAP5-8	O75690	187 aa		3.37	□□□□□ -1.87
NELFCD-204	ENST00000474543	KRTAP5-1	Q6L8H4	278 aa		3.24	□□□□□ -1.89
NELFCD-204	ENST00000474543	LCE1E	Q5T753	118 aa		3.21	□□□□□ -1.9
NELFCD-204	ENST00000474543	MUC5AC	P98088	5654 aa		3.18	□□□□□ -1.9
NELFCD-204	ENST00000474543	KRTAP9-9	Q9BYP9	154 aa		3.17	□□□□□ -1.9
NELFCD-204	ENST00000474543	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.09	□□□□□ -1.91
NELFCD-204	ENST00000474543	KRTAP4-12	Q9BQ66	201 aa		3.06	□□□□□ -1.92
NELFCD-204	ENST00000474543	LCE1B	Q5T7P3	118 aa		3.04	□□□□□ -1.92
NELFCD-204	ENST00000474543	AHNAK	Q09666	5890 aa	Known RBP	3.04	□□□□□ -1.92
NELFCD-204	ENST00000474543	KRTAP4-2	Q9BYR5	136 aa		3.01	□□□□□ -1.93
NELFCD-204	ENST00000474543	LCE1F	Q5T754	118 aa		2.99	□□□□□ -1.93
NELFCD-204	ENST00000474543	LCE1C	Q5T751	118 aa		2.98	□□□□□ -1.93
NELFCD-204	ENST00000474543	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.73	□□□□□ -1.97
NELFCD-204	ENST00000474543	KRTAP21-2	Q3LI59	83 aa		2.72	□□□□□ -1.97
NELFCD-204	ENST00000474543	KRTAP5-11	Q6L8G4	156 aa		2.67	□□□□□ -1.98
NELFCD-204	ENST00000474543	KRTAP4-4	Q9BYR3	166 aa		2.48	□□□□□ -2.01
NELFCD-204	ENST00000474543	KRTAP21-1	Q3LI58	79 aa		2.47	□□□□□ -2.01
NELFCD-204	ENST00000474543	MUC19	Q7Z5P9	8384 aa		2.32	□□□□□ -2.04
NELFCD-204	ENST00000474543	PHGR1	C9JFL3	82 aa		2.3	□□□□□ -2.04
NELFCD-204	ENST00000474543	MUC16	Q8WXI7	14507 aa		1.47	□□□□□ -2.17

Retrieved 78 of 20,778 RNA–protein pairs in 90.1 ms