RNA–Protein interactions for RNA: ENST00000473778.5

C9orf3-214, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 2,396 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-214ENST00000473778 MT1XP80297 61 aa4.4□□□□□ -1.71
C9orf3-214ENST00000473778 KRTAP8-1Q8IUC2 63 aa4.34□□□□□ -1.72
C9orf3-214ENST00000473778 FSIP2Q5CZC0 6907 aa4.33□□□□□ -1.72
C9orf3-214ENST00000473778 KRTAP10-7P60409 375 aaPredicted RBP4.3□□□□□ -1.72
C9orf3-214ENST00000473778 USH2AO75445 5202 aa4.27□□□□□ -1.73
C9orf3-214ENST00000473778 KRTAP10-12P60413 245 aa4.26□□□□□ -1.73
C9orf3-214ENST00000473778 CRCT1Q9UGL9 99 aa4.24□□□□□ -1.73
C9orf3-214ENST00000473778 KRTAP12-3P60328 96 aa4.23□□□□□ -1.73
C9orf3-214ENST00000473778 KMT2DO14686 5537 aa4.2□□□□□ -1.74
C9orf3-214ENST00000473778 KRTAP19-5Q3LI72 72 aa4.09□□□□□ -1.76
C9orf3-214ENST00000473778 LCE1AQ5T7P2 110 aa4.06□□□□□ -1.76
C9orf3-214ENST00000473778 LCE3CQ5T5A8 94 aa3.99□□□□□ -1.77
C9orf3-214ENST00000473778 KRTAP9-6A8MVA2 160 aa3.95□□□□□ -1.78
C9orf3-214ENST00000473778 SSPOA2VEC9 5147 aa3.95□□□□□ -1.78
C9orf3-214ENST00000473778 KRTAP19-7Q3SYF9 63 aa3.93□□□□□ -1.78
C9orf3-214ENST00000473778 FCGBPQ9Y6R7 5405 aaPredicted RBP3.89□□□□□ -1.79
C9orf3-214ENST00000473778 MACF1Q9UPN3 7388 aaKnown RBP3.8□□□□□ -1.8
C9orf3-214ENST00000473778 KRTAP2-2Q9BYT5 123 aa3.8□□□□□ -1.8
C9orf3-214ENST00000473778 MT1LQ93083 61 aa3.78□□□□□ -1.8
C9orf3-214ENST00000473778 MT1EP04732 61 aa3.78□□□□□ -1.8
C9orf3-214ENST00000473778 SYNE2Q8WXH0 6885 aaKnown RBP3.78□□□□□ -1.8
C9orf3-214ENST00000473778 KRTAP2-3P0C7H8 128 aa3.74□□□□□ -1.81
C9orf3-214ENST00000473778 KRTAP2-4Q9BYR9 128 aa3.74□□□□□ -1.81
C9orf3-214ENST00000473778 KRTAP2-1Q9BYU5 128 aa3.74□□□□□ -1.81
C9orf3-214ENST00000473778 KRTAP19-6Q3LI70 58 aa3.69□□□□□ -1.82
C9orf3-214ENST00000473778 MUC12Q9UKN1 5478 aa3.66□□□□□ -1.82
C9orf3-214ENST00000473778 KRTAP4-3Q9BYR4 195 aa3.66□□□□□ -1.82
C9orf3-214ENST00000473778 KRTAP6-3Q3LI67 103 aa3.61□□□□□ -1.83
C9orf3-214ENST00000473778 MT1GP13640 62 aa3.56□□□□□ -1.84
C9orf3-214ENST00000473778 MT1MQ8N339 61 aa3.53□□□□□ -1.84
C9orf3-214ENST00000473778 KRTAP19-3Q7Z4W3 81 aa3.51□□□□□ -1.85
C9orf3-214ENST00000473778 NEBP20929 6669 aa3.51□□□□□ -1.85
C9orf3-214ENST00000473778 DSTQ03001 7570 aaKnown RBP3.51□□□□□ -1.85
C9orf3-214ENST00000473778 KRTAP5-11Q6L8G4 156 aa3.51□□□□□ -1.85
C9orf3-214ENST00000473778 MT3P25713 68 aa3.5□□□□□ -1.85
C9orf3-214ENST00000473778 KRTAP20-1Q3LI63 56 aa3.45□□□□□ -1.86
C9orf3-214ENST00000473778 MDN1Q9NU22 5596 aa3.45□□□□□ -1.86
C9orf3-214ENST00000473778 LCE1EQ5T753 118 aa3.4□□□□□ -1.87
C9orf3-214ENST00000473778 SPRR2FQ96RM1 72 aa3.38□□□□□ -1.87
C9orf3-214ENST00000473778 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.38□□□□□ -1.87
C9orf3-214ENST00000473778 KRTAP12-4P60329 112 aa3.37□□□□□ -1.87
C9orf3-214ENST00000473778 KRTAP5-9P26371 169 aa3.37□□□□□ -1.87
C9orf3-214ENST00000473778 LCE1FQ5T754 118 aa3.33□□□□□ -1.88
C9orf3-214ENST00000473778 SPRR2EP22531 72 aa3.29□□□□□ -1.88
C9orf3-214ENST00000473778 SPRR2BP35325 72 aa3.29□□□□□ -1.88
C9orf3-214ENST00000473778 SPRR2AP35326 72 aa3.29□□□□□ -1.88
C9orf3-214ENST00000473778 SYNE1Q8NF91 8797 aaKnown RBP3.27□□□□□ -1.89
C9orf3-214ENST00000473778 KRTAP6-1Q3LI64 71 aa3.24□□□□□ -1.89
C9orf3-214ENST00000473778 SPRR2DP22532 72 aa3.17□□□□□ -1.9
C9orf3-214ENST00000473778 HMCN1Q96RW7 5635 aa3.15□□□□□ -1.91
C9orf3-214ENST00000473778 MT1AP04731 61 aa3.14□□□□□ -1.91
C9orf3-214ENST00000473778 KRTAP5-5Q701N2 237 aaPredicted RBP3.14□□□□□ -1.91
C9orf3-214ENST00000473778 LCE3DQ9BYE3 92 aa3.06□□□□□ -1.92
C9orf3-214ENST00000473778 PRM1P04553 51 aa3.05□□□□□ -1.92
C9orf3-214ENST00000473778 LCE3EQ5T5B0 92 aa3.01□□□□□ -1.93
C9orf3-214ENST00000473778 KRTAP5-1Q6L8H4 278 aa2.99□□□□□ -1.93
C9orf3-214ENST00000473778 OBSCNQ5VST9 7968 aa2.98□□□□□ -1.93
C9orf3-214ENST00000473778 GPR98Q8WXG9 6306 aa2.98□□□□□ -1.93
C9orf3-214ENST00000473778 KRTAP6-2Q3LI66 62 aa2.89□□□□□ -1.95
C9orf3-214ENST00000473778 KRTAP4-4Q9BYR3 166 aa2.85□□□□□ -1.95
C9orf3-214ENST00000473778 MT4P47944 62 aa2.82□□□□□ -1.96
C9orf3-214ENST00000473778 KRTAP5-4Q6L8H1 288 aa2.81□□□□□ -1.96
C9orf3-214ENST00000473778 AHNAK2Q8IVF2 5795 aa2.75□□□□□ -1.97
C9orf3-214ENST00000473778 KRTAP5-10Q6L8G5 202 aa2.68□□□□□ -1.98
C9orf3-214ENST00000473778 KRTAP5-7Q6L8G8 165 aa2.59□□□□□ -2
C9orf3-214ENST00000473778 KRTAP20-2Q3LI61 65 aa2.56□□□□□ -2
C9orf3-214ENST00000473778 KRTAP5-2Q701N4 177 aa2.56□□□□□ -2
C9orf3-214ENST00000473778 MUC5BQ9HC84 5762 aaPredicted RBP2.55□□□□□ -2
C9orf3-214ENST00000473778 MUC5ACP98088 5654 aa2.44□□□□□ -2.02
C9orf3-214ENST00000473778 KRTAP5-8O75690 187 aa2.3□□□□□ -2.04
C9orf3-214ENST00000473778 LCE1BQ5T7P3 118 aa2.29□□□□□ -2.04
C9orf3-214ENST00000473778 AHNAKQ09666 5890 aaKnown RBP2.27□□□□□ -2.05
C9orf3-214ENST00000473778 LCE1CQ5T751 118 aa2.24□□□□□ -2.05
C9orf3-214ENST00000473778 KRTAP21-2Q3LI59 83 aa2.09□□□□□ -2.07
C9orf3-214ENST00000473778 MUC19Q7Z5P9 8384 aa1.96□□□□□ -2.1
C9orf3-214ENST00000473778 KRTAP21-1Q3LI58 79 aa1.96□□□□□ -2.1
C9orf3-214ENST00000473778 PHGR1C9JFL3 82 aa1.63□□□□□ -2.15
C9orf3-214ENST00000473778 MUC16Q8WXI7 14507 aa1.08□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 5.6 ms