RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	SVIP	Q8NHG7	77 aa		4.39	□□□□□ -1.71
CPNE1-222	ENST00000473373	DST	Q03001	7570 aa	Known RBP	4.37	□□□□□ -1.71
CPNE1-222	ENST00000473373	TMEM258	P61165	79 aa		4.35	□□□□□ -1.71
CPNE1-222	ENST00000473373	LINC01558	Q9Y6Z2	57 aa		4.31	□□□□□ -1.72
CPNE1-222	ENST00000473373	TNP1	P09430	55 aa		4.29	□□□□□ -1.72
CPNE1-222	ENST00000473373	UQCR11	O14957	56 aa		4.27	□□□□□ -1.73
CPNE1-222	ENST00000473373	KRTAP19-7	Q3SYF9	63 aa		4.27	□□□□□ -1.73
CPNE1-222	ENST00000473373	MT1E	P04732	61 aa		4.26	□□□□□ -1.73
CPNE1-222	ENST00000473373	KRTAP19-3	Q7Z4W3	81 aa		4.25	□□□□□ -1.73
CPNE1-222	ENST00000473373	KRTAP19-5	Q3LI72	72 aa		4.24	□□□□□ -1.73
CPNE1-222	ENST00000473373	PCP4	P48539	62 aa		4.23	□□□□□ -1.73
CPNE1-222	ENST00000473373	C10orf95	Q9H7T3	257 aa		4.21	□□□□□ -1.74
CPNE1-222	ENST00000473373	KRTAP5-3	Q6L8H2	238 aa		4.2	□□□□□ -1.74
CPNE1-222	ENST00000473373	PP632	Q6XCG6	107 aa		4.2	□□□□□ -1.74
CPNE1-222	ENST00000473373	LCE3A	Q5TA76	89 aa		4.19	□□□□□ -1.74
CPNE1-222	ENST00000473373		K7ERS5	55 aa		4.18	□□□□□ -1.74
CPNE1-222	ENST00000473373	MIR22HG	Q0VDD5	57 aa		4.18	□□□□□ -1.74
CPNE1-222	ENST00000473373	HMCN1	Q96RW7	5635 aa		4.18	□□□□□ -1.74
CPNE1-222	ENST00000473373	MT1G	P13640	62 aa		4.15	□□□□□ -1.75
CPNE1-222	ENST00000473373		V9GYY9	64 aa		4.15	□□□□□ -1.75
CPNE1-222	ENST00000473373	PSPHP1	O15172	72 aa		4.12	□□□□□ -1.75
CPNE1-222	ENST00000473373	MT1L	Q93083	61 aa		4.09	□□□□□ -1.75
CPNE1-222	ENST00000473373	AHNAK2	Q8IVF2	5795 aa		4.09	□□□□□ -1.75
CPNE1-222	ENST00000473373	MT4	P47944	62 aa		4.07	□□□□□ -1.76
CPNE1-222	ENST00000473373	MT1M	Q8N339	61 aa		4.07	□□□□□ -1.76
CPNE1-222	ENST00000473373		Q1T7F1	81 aa		4.04	□□□□□ -1.76
CPNE1-222	ENST00000473373		A6NED7	52 aa		4.03	□□□□□ -1.76
CPNE1-222	ENST00000473373	KRTAP12-3	P60328	96 aa		4.03	□□□□□ -1.76
CPNE1-222	ENST00000473373	KRTAP25-1	Q3LHN0	102 aa		4.03	□□□□□ -1.76
CPNE1-222	ENST00000473373	KRTAP5-10	Q6L8G5	202 aa		3.99	□□□□□ -1.77
CPNE1-222	ENST00000473373		A0A0A0MQY5	61 aa		3.98	□□□□□ -1.77
CPNE1-222	ENST00000473373	KRTAP4-3	Q9BYR4	195 aa		3.97	□□□□□ -1.77
CPNE1-222	ENST00000473373	CDC42SE1	Q9NRR8	79 aa		3.91	□□□□□ -1.78
CPNE1-222	ENST00000473373	KRTAP5-7	Q6L8G8	165 aa		3.87	□□□□□ -1.79
CPNE1-222	ENST00000473373	KRTAP5-4	Q6L8H1	288 aa		3.87	□□□□□ -1.79
CPNE1-222	ENST00000473373	MT3	P25713	68 aa		3.86	□□□□□ -1.79
CPNE1-222	ENST00000473373	RPS28	P62857	69 aa	Known RBP	3.83	□□□□□ -1.8
CPNE1-222	ENST00000473373	ROMO1	P60602	79 aa		3.81	□□□□□ -1.8
CPNE1-222	ENST00000473373	SPRR5	A0A1B0GTR4	108 aa		3.77	□□□□□ -1.81
CPNE1-222	ENST00000473373	LCE3C	Q5T5A8	94 aa		3.7	□□□□□ -1.82
CPNE1-222	ENST00000473373	KRTAP12-4	P60329	112 aa		3.69	□□□□□ -1.82
CPNE1-222	ENST00000473373	KRTAP20-2	Q3LI61	65 aa		3.69	□□□□□ -1.82
CPNE1-222	ENST00000473373	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.66	□□□□□ -1.82
CPNE1-222	ENST00000473373	SYNE1	Q8NF91	8797 aa	Known RBP	3.54	□□□□□ -1.84
CPNE1-222	ENST00000473373	BRK1	Q8WUW1	75 aa		3.51	□□□□□ -1.85
CPNE1-222	ENST00000473373	AHNAK	Q09666	5890 aa	Known RBP	3.51	□□□□□ -1.85
CPNE1-222	ENST00000473373	MT1A	P04731	61 aa		3.49	□□□□□ -1.85
CPNE1-222	ENST00000473373	LCE1E	Q5T753	118 aa		3.48	□□□□□ -1.85
CPNE1-222	ENST00000473373	KRTAP6-1	Q3LI64	71 aa		3.46	□□□□□ -1.86
CPNE1-222	ENST00000473373	MUC5AC	P98088	5654 aa		3.45	□□□□□ -1.86
CPNE1-222	ENST00000473373	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.42	□□□□□ -1.86
CPNE1-222	ENST00000473373	KRTAP9-6	A8MVA2	160 aa		3.41	□□□□□ -1.86
CPNE1-222	ENST00000473373	NDUFAF8	A1L188	74 aa		3.36	□□□□□ -1.87
CPNE1-222	ENST00000473373	KRTAP5-8	O75690	187 aa		3.36	□□□□□ -1.87
CPNE1-222	ENST00000473373	KRTAP5-11	Q6L8G4	156 aa		3.33	□□□□□ -1.88
CPNE1-222	ENST00000473373	KRTAP6-2	Q3LI66	62 aa		3.32	□□□□□ -1.88
CPNE1-222	ENST00000473373	KRTAP5-2	Q701N4	177 aa		3.32	□□□□□ -1.88
CPNE1-222	ENST00000473373	OBSCN	Q5VST9	7968 aa		3.28	□□□□□ -1.88
CPNE1-222	ENST00000473373	PMAIP1	Q13794	54 aa		3.28	□□□□□ -1.88
CPNE1-222	ENST00000473373	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.28	□□□□□ -1.88
CPNE1-222	ENST00000473373	PRAC1	Q96KF2	57 aa		3.27	□□□□□ -1.89
CPNE1-222	ENST00000473373	LCE1F	Q5T754	118 aa		3.26	□□□□□ -1.89
CPNE1-222	ENST00000473373	KRTAP5-1	Q6L8H4	278 aa		3.06	□□□□□ -1.92
CPNE1-222	ENST00000473373	PRO0628	Q9UI54	55 aa		3	□□□□□ -1.93
CPNE1-222	ENST00000473373	KTN1-AS1	Q86SY8	53 aa		2.89	□□□□□ -1.95
CPNE1-222	ENST00000473373	LCE1B	Q5T7P3	118 aa		2.83	□□□□□ -1.96
CPNE1-222	ENST00000473373	LCE3E	Q5T5B0	92 aa		2.76	□□□□□ -1.97
CPNE1-222	ENST00000473373	LUZP6	Q538Z0	58 aa		2.74	□□□□□ -1.97
CPNE1-222	ENST00000473373	LCE3D	Q9BYE3	92 aa		2.7	□□□□□ -1.98
CPNE1-222	ENST00000473373	LCE1C	Q5T751	118 aa		2.68	□□□□□ -1.98
CPNE1-222	ENST00000473373	KRTAP4-4	Q9BYR3	166 aa		2.66	□□□□□ -1.98
CPNE1-222	ENST00000473373	PHGR1	C9JFL3	82 aa		2.36	□□□□□ -2.03
CPNE1-222	ENST00000473373	KRTAP21-2	Q3LI59	83 aa		2.24	□□□□□ -2.05
CPNE1-222	ENST00000473373	MUC19	Q7Z5P9	8384 aa		2.04	□□□□□ -2.08
CPNE1-222	ENST00000473373	PRM1	P04553	51 aa		1.95	□□□□□ -2.1
CPNE1-222	ENST00000473373	KRTAP21-1	Q3LI58	79 aa		1.77	□□□□□ -2.13
CPNE1-222	ENST00000473373	INE1	O15225	51 aa		1.72	□□□□□ -2.13
CPNE1-222	ENST00000473373	MUC16	Q8WXI7	14507 aa		1.39	□□□□□ -2.19

Retrieved 78 of 20,778 RNA–protein pairs in 12.3 ms