RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 TNP1P09430 55 aa6.08□□□□□ -1.44
COL7A1-208ENST00000470076 KRTAP5-4Q6L8H1 288 aa6.08□□□□□ -1.44
COL7A1-208ENST00000470076 A8MU10 97 aa6.07□□□□□ -1.44
COL7A1-208ENST00000470076 PCP4P48539 62 aa6.07□□□□□ -1.44
COL7A1-208ENST00000470076 KRTAP4-3Q9BYR4 195 aa6.07□□□□□ -1.44
COL7A1-208ENST00000470076 AHNAK2Q8IVF2 5795 aa6.06□□□□□ -1.44
COL7A1-208ENST00000470076 LINC01558Q9Y6Z2 57 aa5.99□□□□□ -1.45
COL7A1-208ENST00000470076 KRTAP4-6Q9BYQ5 205 aa5.98□□□□□ -1.45
COL7A1-208ENST00000470076 KRTAP5-10Q6L8G5 202 aa5.95□□□□□ -1.46
COL7A1-208ENST00000470076 PRR15LQ9BU68 103 aa5.91□□□□□ -1.46
COL7A1-208ENST00000470076 KRTAP12-3P60328 96 aa5.88□□□□□ -1.47
COL7A1-208ENST00000470076 KRTAP4-7Q9BYR0 210 aa5.86□□□□□ -1.47
COL7A1-208ENST00000470076 RPS28P62857 69 aaKnown RBP5.84□□□□□ -1.47
COL7A1-208ENST00000470076 Q1T7F1 81 aa5.83□□□□□ -1.48
COL7A1-208ENST00000470076 V9GYY9 64 aa5.8□□□□□ -1.48
COL7A1-208ENST00000470076 KRTAP5-3Q6L8H2 238 aa5.77□□□□□ -1.49
COL7A1-208ENST00000470076 UQCR11O14957 56 aa5.75□□□□□ -1.49
COL7A1-208ENST00000470076 KRTAP20-2Q3LI61 65 aa5.75□□□□□ -1.49
COL7A1-208ENST00000470076 KRTAP5-7Q6L8G8 165 aa5.75□□□□□ -1.49
COL7A1-208ENST00000470076 PSPHP1O15172 72 aa5.74□□□□□ -1.49
COL7A1-208ENST00000470076 KRTAP5-5Q701N2 237 aaPredicted RBP5.74□□□□□ -1.49
COL7A1-208ENST00000470076 SPRR5A0A1B0GTR4 108 aa5.71□□□□□ -1.5
COL7A1-208ENST00000470076 KRTAP12-4P60329 112 aa5.66□□□□□ -1.5
COL7A1-208ENST00000470076 MIR22HGQ0VDD5 57 aa5.65□□□□□ -1.5
COL7A1-208ENST00000470076 KRTAP25-1Q3LHN0 102 aa5.63□□□□□ -1.51
COL7A1-208ENST00000470076 KRTAP19-4Q3LI73 84 aa5.58□□□□□ -1.52
COL7A1-208ENST00000470076 SYNE1Q8NF91 8797 aaKnown RBP5.57□□□□□ -1.52
COL7A1-208ENST00000470076 LOC100996750A0A140TA64 210 aa5.57□□□□□ -1.52
COL7A1-208ENST00000470076 A6NED7 52 aa5.53□□□□□ -1.52
COL7A1-208ENST00000470076 K7ERS5 55 aa5.47□□□□□ -1.53
COL7A1-208ENST00000470076 KRTAP23-1A1A580 65 aa5.42□□□□□ -1.54
COL7A1-208ENST00000470076 KRTAP15-1Q3LI76 137 aa5.42□□□□□ -1.54
COL7A1-208ENST00000470076 LCE3CQ5T5A8 94 aa5.39□□□□□ -1.55
COL7A1-208ENST00000470076 CDC42SE1Q9NRR8 79 aa5.39□□□□□ -1.55
COL7A1-208ENST00000470076 KRTAP4-11Q9BYQ6 195 aa5.3□□□□□ -1.56
COL7A1-208ENST00000470076 KRTAP5-2Q701N4 177 aa5.29□□□□□ -1.56
COL7A1-208ENST00000470076 MT1AP04731 61 aa5.28□□□□□ -1.56
COL7A1-208ENST00000470076 KRTAP6-1Q3LI64 71 aa5.25□□□□□ -1.57
COL7A1-208ENST00000470076 ROMO1P60602 79 aa5.18□□□□□ -1.58
COL7A1-208ENST00000470076 KRTAP5-8O75690 187 aa5.12□□□□□ -1.59
COL7A1-208ENST00000470076 BRK1Q8WUW1 75 aa5.12□□□□□ -1.59
COL7A1-208ENST00000470076 KRTAP9-4Q9BYQ2 154 aa5.12□□□□□ -1.59
COL7A1-208ENST00000470076 KRTAP9-6A8MVA2 160 aa5.07□□□□□ -1.6
COL7A1-208ENST00000470076 KRTAP6-2Q3LI66 62 aa5.06□□□□□ -1.6
COL7A1-208ENST00000470076 AHNAKQ09666 5890 aaKnown RBP5.04□□□□□ -1.6
COL7A1-208ENST00000470076 OBSCNQ5VST9 7968 aa5.03□□□□□ -1.6
COL7A1-208ENST00000470076 MUC5BQ9HC84 5762 aaPredicted RBP5.03□□□□□ -1.6
COL7A1-208ENST00000470076 MUC5ACP98088 5654 aa5.03□□□□□ -1.6
COL7A1-208ENST00000470076 KRTAP9-9Q9BYP9 154 aa4.91□□□□□ -1.62
COL7A1-208ENST00000470076 MT3P25713 68 aa4.85□□□□□ -1.63
COL7A1-208ENST00000470076 PMAIP1Q13794 54 aa4.83□□□□□ -1.64
COL7A1-208ENST00000470076 PRO0628Q9UI54 55 aa4.78□□□□□ -1.64
COL7A1-208ENST00000470076 KRTAP5-1Q6L8H4 278 aa4.77□□□□□ -1.65
COL7A1-208ENST00000470076 PRAC1Q96KF2 57 aa4.6□□□□□ -1.67
COL7A1-208ENST00000470076 LCE1EQ5T753 118 aa4.52□□□□□ -1.69
COL7A1-208ENST00000470076 KTN1-AS1Q86SY8 53 aa4.48□□□□□ -1.69
COL7A1-208ENST00000470076 KRTAP4-2Q9BYR5 136 aa4.26□□□□□ -1.73
COL7A1-208ENST00000470076 LCE1BQ5T7P3 118 aa4.24□□□□□ -1.73
COL7A1-208ENST00000470076 SVIPQ8NHG7 77 aa4.24□□□□□ -1.73
COL7A1-208ENST00000470076 LCE1CQ5T751 118 aa4.19□□□□□ -1.74
COL7A1-208ENST00000470076 KRTAP4-12Q9BQ66 201 aa3.92□□□□□ -1.78
COL7A1-208ENST00000470076 LCE3DQ9BYE3 92 aa3.85□□□□□ -1.79
COL7A1-208ENST00000470076 KRTAP5-11Q6L8G4 156 aa3.81□□□□□ -1.8
COL7A1-208ENST00000470076 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.79□□□□□ -1.8
COL7A1-208ENST00000470076 LCE1FQ5T754 118 aa3.77□□□□□ -1.81
COL7A1-208ENST00000470076 LUZP6Q538Z0 58 aa3.76□□□□□ -1.81
COL7A1-208ENST00000470076 LCE3EQ5T5B0 92 aa3.58□□□□□ -1.84
COL7A1-208ENST00000470076 PHGR1C9JFL3 82 aa3.48□□□□□ -1.85
COL7A1-208ENST00000470076 KRTAP21-2Q3LI59 83 aa3.47□□□□□ -1.85
COL7A1-208ENST00000470076 NDUFAF8A1L188 74 aa3.37□□□□□ -1.87
COL7A1-208ENST00000470076 KRTAP4-4Q9BYR3 166 aa3.19□□□□□ -1.9
COL7A1-208ENST00000470076 MUC19Q7Z5P9 8384 aa3.12□□□□□ -1.91
COL7A1-208ENST00000470076 H3BS24 57 aa2.87□□□□□ -1.95
COL7A1-208ENST00000470076 A0A0A0MQY5 61 aa2.82□□□□□ -1.96
COL7A1-208ENST00000470076 INE1O15225 51 aa2.76□□□□□ -1.97
COL7A1-208ENST00000470076 PRM1P04553 51 aa2.67□□□□□ -1.98
COL7A1-208ENST00000470076 KRTAP21-1Q3LI58 79 aa2.65□□□□□ -1.99
COL7A1-208ENST00000470076 MUC16Q8WXI7 14507 aa2.17□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 74 ms