RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 A0A1B0GU69 56 aa4.73□□□□□ -1.65
CPSF4-210ENST00000469897 MT4P47944 62 aa4.73□□□□□ -1.65
CPSF4-210ENST00000469897 MT1MQ8N339 61 aa4.73□□□□□ -1.65
CPSF4-210ENST00000469897 LCE4AQ5TA78 99 aa4.71□□□□□ -1.66
CPSF4-210ENST00000469897 MT1LQ93083 61 aa4.71□□□□□ -1.66
CPSF4-210ENST00000469897 BRK1Q8WUW1 75 aa4.7□□□□□ -1.66
CPSF4-210ENST00000469897 PRO0628Q9UI54 55 aa4.7□□□□□ -1.66
CPSF4-210ENST00000469897 KRTAP4-3Q9BYR4 195 aa4.68□□□□□ -1.66
CPSF4-210ENST00000469897 A6NED7 52 aa4.67□□□□□ -1.66
CPSF4-210ENST00000469897 HMCN1Q96RW7 5635 aa4.66□□□□□ -1.66
CPSF4-210ENST00000469897 CDC42SE1Q9NRR8 79 aa4.65□□□□□ -1.67
CPSF4-210ENST00000469897 A8MU10 97 aa4.64□□□□□ -1.67
CPSF4-210ENST00000469897 LCE3AQ5TA76 89 aa4.64□□□□□ -1.67
CPSF4-210ENST00000469897 C10orf95Q9H7T3 257 aa4.64□□□□□ -1.67
CPSF4-210ENST00000469897 UQCR11O14957 56 aa4.62□□□□□ -1.67
CPSF4-210ENST00000469897 TNP1P09430 55 aa4.59□□□□□ -1.67
CPSF4-210ENST00000469897 KRTAP5-4Q6L8H1 288 aa4.59□□□□□ -1.67
CPSF4-210ENST00000469897 MIR22HGQ0VDD5 57 aa4.58□□□□□ -1.68
CPSF4-210ENST00000469897 KRTAP4-6Q9BYQ5 205 aa4.58□□□□□ -1.68
CPSF4-210ENST00000469897 AHNAK2Q8IVF2 5795 aa4.54□□□□□ -1.68
CPSF4-210ENST00000469897 KRTAP4-7Q9BYR0 210 aa4.52□□□□□ -1.69
CPSF4-210ENST00000469897 KRTAP5-10Q6L8G5 202 aa4.5□□□□□ -1.69
CPSF4-210ENST00000469897 PMAIP1Q13794 54 aa4.47□□□□□ -1.69
CPSF4-210ENST00000469897 KRTAP12-3P60328 96 aa4.45□□□□□ -1.7
CPSF4-210ENST00000469897 KRTAP5-3Q6L8H2 238 aa4.38□□□□□ -1.71
CPSF4-210ENST00000469897 KRTAP20-2Q3LI61 65 aa4.35□□□□□ -1.71
CPSF4-210ENST00000469897 KRTAP5-7Q6L8G8 165 aa4.34□□□□□ -1.71
CPSF4-210ENST00000469897 KRTAP5-5Q701N2 237 aaPredicted RBP4.33□□□□□ -1.72
CPSF4-210ENST00000469897 KTN1-AS1Q86SY8 53 aa4.32□□□□□ -1.72
CPSF4-210ENST00000469897 K7ERS5 55 aa4.31□□□□□ -1.72
CPSF4-210ENST00000469897 SPRR5A0A1B0GTR4 108 aa4.3□□□□□ -1.72
CPSF4-210ENST00000469897 LOC100996750A0A140TA64 210 aa4.29□□□□□ -1.72
CPSF4-210ENST00000469897 KRTAP12-4P60329 112 aa4.28□□□□□ -1.72
CPSF4-210ENST00000469897 SYNE1Q8NF91 8797 aaKnown RBP4.27□□□□□ -1.73
CPSF4-210ENST00000469897 KRTAP25-1Q3LHN0 102 aa4.23□□□□□ -1.73
CPSF4-210ENST00000469897 ROMO1P60602 79 aa4.2□□□□□ -1.74
CPSF4-210ENST00000469897 H3BS24 57 aa4.17□□□□□ -1.74
CPSF4-210ENST00000469897 PRAC1Q96KF2 57 aa4.17□□□□□ -1.74
CPSF4-210ENST00000469897 KRTAP19-4Q3LI73 84 aa4.14□□□□□ -1.75
CPSF4-210ENST00000469897 KRTAP15-1Q3LI76 137 aa4.1□□□□□ -1.75
CPSF4-210ENST00000469897 LCE3CQ5T5A8 94 aa4.09□□□□□ -1.75
CPSF4-210ENST00000469897 KRTAP23-1A1A580 65 aa4.04□□□□□ -1.76
CPSF4-210ENST00000469897 KRTAP4-11Q9BYQ6 195 aa4.02□□□□□ -1.77
CPSF4-210ENST00000469897 MT1AP04731 61 aa3.99□□□□□ -1.77
CPSF4-210ENST00000469897 KRTAP6-1Q3LI64 71 aa3.99□□□□□ -1.77
CPSF4-210ENST00000469897 KRTAP5-2Q701N4 177 aa3.98□□□□□ -1.77
CPSF4-210ENST00000469897 KRTAP9-4Q9BYQ2 154 aa3.9□□□□□ -1.79
CPSF4-210ENST00000469897 KRTAP5-8O75690 187 aa3.89□□□□□ -1.79
CPSF4-210ENST00000469897 OBSCNQ5VST9 7968 aa3.89□□□□□ -1.79
CPSF4-210ENST00000469897 KRTAP9-6A8MVA2 160 aa3.88□□□□□ -1.79
CPSF4-210ENST00000469897 A0A0A0MQY5 61 aa3.87□□□□□ -1.79
CPSF4-210ENST00000469897 KRTAP6-2Q3LI66 62 aa3.86□□□□□ -1.79
CPSF4-210ENST00000469897 AHNAKQ09666 5890 aaKnown RBP3.82□□□□□ -1.8
CPSF4-210ENST00000469897 MUC5ACP98088 5654 aa3.79□□□□□ -1.8
CPSF4-210ENST00000469897 MUC5BQ9HC84 5762 aaPredicted RBP3.77□□□□□ -1.81
CPSF4-210ENST00000469897 KRTAP9-9Q9BYP9 154 aa3.72□□□□□ -1.81
CPSF4-210ENST00000469897 MT3P25713 68 aa3.67□□□□□ -1.82
CPSF4-210ENST00000469897 KRTAP5-1Q6L8H4 278 aa3.62□□□□□ -1.83
CPSF4-210ENST00000469897 LUZP6Q538Z0 58 aa3.47□□□□□ -1.85
CPSF4-210ENST00000469897 LCE1EQ5T753 118 aa3.39□□□□□ -1.87
CPSF4-210ENST00000469897 NDUFAF8A1L188 74 aa3.36□□□□□ -1.87
CPSF4-210ENST00000469897 LCE1BQ5T7P3 118 aa3.26□□□□□ -1.89
CPSF4-210ENST00000469897 KRTAP4-12Q9BQ66 201 aa3.26□□□□□ -1.89
CPSF4-210ENST00000469897 KRTAP4-2Q9BYR5 136 aa3.23□□□□□ -1.89
CPSF4-210ENST00000469897 LCE1CQ5T751 118 aa3.16□□□□□ -1.9
CPSF4-210ENST00000469897 INE1O15225 51 aa2.91□□□□□ -1.94
CPSF4-210ENST00000469897 LCE3DQ9BYE3 92 aa2.91□□□□□ -1.94
CPSF4-210ENST00000469897 KRTAP5-11Q6L8G4 156 aa2.85□□□□□ -1.95
CPSF4-210ENST00000469897 LCE1FQ5T754 118 aa2.82□□□□□ -1.96
CPSF4-210ENST00000469897 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.82□□□□□ -1.96
CPSF4-210ENST00000469897 LCE3EQ5T5B0 92 aa2.71□□□□□ -1.98
CPSF4-210ENST00000469897 PHGR1C9JFL3 82 aa2.65□□□□□ -1.99
CPSF4-210ENST00000469897 KRTAP21-2Q3LI59 83 aa2.64□□□□□ -1.99
CPSF4-210ENST00000469897 KRTAP4-4Q9BYR3 166 aa2.48□□□□□ -2.01
CPSF4-210ENST00000469897 MUC19Q7Z5P9 8384 aa2.39□□□□□ -2.03
CPSF4-210ENST00000469897 PRM1P04553 51 aa2.19□□□□□ -2.06
CPSF4-210ENST00000469897 KRTAP21-1Q3LI58 79 aa1.99□□□□□ -2.09
CPSF4-210ENST00000469897 MUC16Q8WXI7 14507 aa1.6□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 73 ms