RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 MT1GP13640 62 aa7.39□□□□□ -1.23
COL6A1-203ENST00000466285 MT1MQ8N339 61 aa7.39□□□□□ -1.23
COL6A1-203ENST00000466285 AHNAK2Q8IVF2 5795 aa7.37□□□□□ -1.23
COL6A1-203ENST00000466285 PSPHP1O15172 72 aa7.37□□□□□ -1.23
COL6A1-203ENST00000466285 KRTAP4-3Q9BYR4 195 aa7.35□□□□□ -1.23
COL6A1-203ENST00000466285 LCE4AQ5TA78 99 aa7.33□□□□□ -1.24
COL6A1-203ENST00000466285 MT1LQ93083 61 aa7.33□□□□□ -1.24
COL6A1-203ENST00000466285 SPINT4Q6UDR6 99 aa7.29□□□□□ -1.24
COL6A1-203ENST00000466285 PP632Q6XCG6 107 aa7.27□□□□□ -1.25
COL6A1-203ENST00000466285 MIR22HGQ0VDD5 57 aa7.25□□□□□ -1.25
COL6A1-203ENST00000466285 KRTAP5-4Q6L8H1 288 aa7.22□□□□□ -1.25
COL6A1-203ENST00000466285 KRTAP4-6Q9BYQ5 205 aa7.21□□□□□ -1.26
COL6A1-203ENST00000466285 KRTAP5-10Q6L8G5 202 aa7.18□□□□□ -1.26
COL6A1-203ENST00000466285 LCE3AQ5TA76 89 aa7.17□□□□□ -1.26
COL6A1-203ENST00000466285 C10orf95Q9H7T3 257 aa7.15□□□□□ -1.26
COL6A1-203ENST00000466285 A6NED7 52 aa7.13□□□□□ -1.27
COL6A1-203ENST00000466285 KRTAP4-7Q9BYR0 210 aa7.06□□□□□ -1.28
COL6A1-203ENST00000466285 CDC42SE1Q9NRR8 79 aa7□□□□□ -1.29
COL6A1-203ENST00000466285 K7ERS5 55 aa6.95□□□□□ -1.3
COL6A1-203ENST00000466285 KRTAP5-3Q6L8H2 238 aa6.92□□□□□ -1.3
COL6A1-203ENST00000466285 TNP1P09430 55 aa6.9□□□□□ -1.3
COL6A1-203ENST00000466285 KRTAP5-7Q6L8G8 165 aa6.9□□□□□ -1.3
COL6A1-203ENST00000466285 KRTAP20-2Q3LI61 65 aa6.86□□□□□ -1.31
COL6A1-203ENST00000466285 KRTAP5-5Q701N2 237 aaPredicted RBP6.83□□□□□ -1.32
COL6A1-203ENST00000466285 KRTAP12-3P60328 96 aa6.8□□□□□ -1.32
COL6A1-203ENST00000466285 KRTAP25-1Q3LHN0 102 aa6.75□□□□□ -1.33
COL6A1-203ENST00000466285 LOC100996750A0A140TA64 210 aa6.7□□□□□ -1.34
COL6A1-203ENST00000466285 SPRR5A0A1B0GTR4 108 aa6.68□□□□□ -1.34
COL6A1-203ENST00000466285 ROMO1P60602 79 aa6.66□□□□□ -1.34
COL6A1-203ENST00000466285 BRK1Q8WUW1 75 aa6.64□□□□□ -1.35
COL6A1-203ENST00000466285 SYNE1Q8NF91 8797 aaKnown RBP6.61□□□□□ -1.35
COL6A1-203ENST00000466285 KRTAP23-1A1A580 65 aa6.59□□□□□ -1.35
COL6A1-203ENST00000466285 KRTAP12-4P60329 112 aa6.56□□□□□ -1.36
COL6A1-203ENST00000466285 KRTAP4-11Q9BYQ6 195 aa6.3□□□□□ -1.4
COL6A1-203ENST00000466285 KRTAP5-2Q701N4 177 aa6.29□□□□□ -1.4
COL6A1-203ENST00000466285 PRO0628Q9UI54 55 aa6.28□□□□□ -1.4
COL6A1-203ENST00000466285 PMAIP1Q13794 54 aa6.26□□□□□ -1.41
COL6A1-203ENST00000466285 KRTAP6-1Q3LI64 71 aa6.25□□□□□ -1.41
COL6A1-203ENST00000466285 LCE3CQ5T5A8 94 aa6.23□□□□□ -1.41
COL6A1-203ENST00000466285 KRTAP15-1Q3LI76 137 aa6.21□□□□□ -1.42
COL6A1-203ENST00000466285 MT1AP04731 61 aa6.2□□□□□ -1.42
COL6A1-203ENST00000466285 KRTAP19-4Q3LI73 84 aa6.19□□□□□ -1.42
COL6A1-203ENST00000466285 KRTAP5-8O75690 187 aa6.15□□□□□ -1.42
COL6A1-203ENST00000466285 AHNAKQ09666 5890 aaKnown RBP6.11□□□□□ -1.43
COL6A1-203ENST00000466285 MUC5ACP98088 5654 aa6.1□□□□□ -1.43
COL6A1-203ENST00000466285 MUC5BQ9HC84 5762 aaPredicted RBP6.07□□□□□ -1.44
COL6A1-203ENST00000466285 KRTAP9-6A8MVA2 160 aa6.05□□□□□ -1.44
COL6A1-203ENST00000466285 KRTAP6-2Q3LI66 62 aa6.01□□□□□ -1.45
COL6A1-203ENST00000466285 KRTAP9-4Q9BYQ2 154 aa5.99□□□□□ -1.45
COL6A1-203ENST00000466285 PRAC1Q96KF2 57 aa5.96□□□□□ -1.46
COL6A1-203ENST00000466285 OBSCNQ5VST9 7968 aa5.94□□□□□ -1.46
COL6A1-203ENST00000466285 KTN1-AS1Q86SY8 53 aa5.89□□□□□ -1.47
COL6A1-203ENST00000466285 KRTAP9-9Q9BYP9 154 aa5.78□□□□□ -1.48
COL6A1-203ENST00000466285 KRTAP5-1Q6L8H4 278 aa5.71□□□□□ -1.5
COL6A1-203ENST00000466285 MT3P25713 68 aa5.6□□□□□ -1.51
COL6A1-203ENST00000466285 SVIPQ8NHG7 77 aa5.45□□□□□ -1.54
COL6A1-203ENST00000466285 LCE1EQ5T753 118 aa5.21□□□□□ -1.58
COL6A1-203ENST00000466285 KRTAP4-2Q9BYR5 136 aa5.11□□□□□ -1.59
COL6A1-203ENST00000466285 LCE1BQ5T7P3 118 aa5.04□□□□□ -1.6
COL6A1-203ENST00000466285 LUZP6Q538Z0 58 aa4.87□□□□□ -1.63
COL6A1-203ENST00000466285 LCE1CQ5T751 118 aa4.87□□□□□ -1.63
COL6A1-203ENST00000466285 KRTAP4-12Q9BQ66 201 aa4.78□□□□□ -1.64
COL6A1-203ENST00000466285 KRTAP5-11Q6L8G4 156 aa4.48□□□□□ -1.69
COL6A1-203ENST00000466285 NDUFAF8A1L188 74 aa4.4□□□□□ -1.71
COL6A1-203ENST00000466285 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.4□□□□□ -1.71
COL6A1-203ENST00000466285 LCE3DQ9BYE3 92 aa4.4□□□□□ -1.71
COL6A1-203ENST00000466285 LCE1FQ5T754 118 aa4.33□□□□□ -1.72
COL6A1-203ENST00000466285 LCE3EQ5T5B0 92 aa4.22□□□□□ -1.73
COL6A1-203ENST00000466285 PHGR1C9JFL3 82 aa4.17□□□□□ -1.74
COL6A1-203ENST00000466285 KRTAP21-2Q3LI59 83 aa4.12□□□□□ -1.75
COL6A1-203ENST00000466285 KRTAP4-4Q9BYR3 166 aa3.89□□□□□ -1.79
COL6A1-203ENST00000466285 MUC19Q7Z5P9 8384 aa3.69□□□□□ -1.82
COL6A1-203ENST00000466285 A0A0A0MQY5 61 aa3.68□□□□□ -1.82
COL6A1-203ENST00000466285 INE1O15225 51 aa3.66□□□□□ -1.82
COL6A1-203ENST00000466285 PRM1P04553 51 aa3.43□□□□□ -1.86
COL6A1-203ENST00000466285 KRTAP21-1Q3LI58 79 aa3.1□□□□□ -1.91
COL6A1-203ENST00000466285 H3BS24 57 aa2.86□□□□□ -1.95
COL6A1-203ENST00000466285 MUC16Q8WXI7 14507 aa2.63□□□□□ -1.99
Retrieved 78 of 20,778 RNA–protein pairs in 51.2 ms