RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 COA5Q86WW8 74 aa3.7□□□□□ -1.82
USP39-212ENST00000465514 V9GYY9 64 aa3.7□□□□□ -1.82
USP39-212ENST00000465514 SPTSSBQ8NFR3 76 aa3.69□□□□□ -1.82
USP39-212ENST00000465514 CHKB-CPT1BH3BT56 60 aa3.67□□□□□ -1.82
USP39-212ENST00000465514 KRTAP5-11Q6L8G4 156 aa3.67□□□□□ -1.82
USP39-212ENST00000465514 KRTAP19-3Q7Z4W3 81 aa3.67□□□□□ -1.82
USP39-212ENST00000465514 Q1T7F1 81 aa3.64□□□□□ -1.83
USP39-212ENST00000465514 KRTAP19-7Q3SYF9 63 aa3.64□□□□□ -1.83
USP39-212ENST00000465514 BRK1Q8WUW1 75 aa3.64□□□□□ -1.83
USP39-212ENST00000465514 KRTAP13-4Q3LI77 160 aa3.62□□□□□ -1.83
USP39-212ENST00000465514 KRTAP5-4Q6L8H1 288 aa3.62□□□□□ -1.83
USP39-212ENST00000465514 CAMK2N1Q7Z7J9 78 aa3.62□□□□□ -1.83
USP39-212ENST00000465514 MT1EP04732 61 aa3.61□□□□□ -1.83
USP39-212ENST00000465514 LCE1EQ5T753 118 aa3.57□□□□□ -1.84
USP39-212ENST00000465514 AHNAKQ09666 5890 aaKnown RBP3.54□□□□□ -1.84
USP39-212ENST00000465514 LINC01558Q9Y6Z2 57 aa3.53□□□□□ -1.84
USP39-212ENST00000465514 PSPHP1O15172 72 aa3.52□□□□□ -1.85
USP39-212ENST00000465514 A0A0D9SG42 100 aa3.51□□□□□ -1.85
USP39-212ENST00000465514 MT1GP13640 62 aa3.51□□□□□ -1.85
USP39-212ENST00000465514 KRTAP19-5Q3LI72 72 aa3.51□□□□□ -1.85
USP39-212ENST00000465514 PRR15LQ9BU68 103 aa3.51□□□□□ -1.85
USP39-212ENST00000465514 A0A1B0GU69 56 aa3.49□□□□□ -1.85
USP39-212ENST00000465514 PMAIP1Q13794 54 aa3.49□□□□□ -1.85
USP39-212ENST00000465514 A6NED7 52 aa3.48□□□□□ -1.85
USP39-212ENST00000465514 SEC61GP60059 68 aa3.48□□□□□ -1.85
USP39-212ENST00000465514 PP632Q6XCG6 107 aa3.48□□□□□ -1.85
USP39-212ENST00000465514 MUC5ACP98088 5654 aa3.47□□□□□ -1.85
USP39-212ENST00000465514 KRTAP20-2Q3LI61 65 aa3.46□□□□□ -1.86
USP39-212ENST00000465514 MT1MQ8N339 61 aa3.46□□□□□ -1.86
USP39-212ENST00000465514 MT3P25713 68 aa3.45□□□□□ -1.86
USP39-212ENST00000465514 SPATA8Q6RVD6 105 aa3.45□□□□□ -1.86
USP39-212ENST00000465514 SPINT4Q6UDR6 99 aa3.45□□□□□ -1.86
USP39-212ENST00000465514 CDC42SE1Q9NRR8 79 aa3.45□□□□□ -1.86
USP39-212ENST00000465514 KRTAP4-3Q9BYR4 195 aa3.43□□□□□ -1.86
USP39-212ENST00000465514 KTN1-AS1Q86SY8 53 aa3.42□□□□□ -1.86
USP39-212ENST00000465514 MT1LQ93083 61 aa3.42□□□□□ -1.86
USP39-212ENST00000465514 A0A1B0GU33 70 aa3.41□□□□□ -1.86
USP39-212ENST00000465514 KRTAP12-1P59990 96 aa3.41□□□□□ -1.86
USP39-212ENST00000465514 MUC5BQ9HC84 5762 aaPredicted RBP3.38□□□□□ -1.87
USP39-212ENST00000465514 UQCR11O14957 56 aa3.36□□□□□ -1.87
USP39-212ENST00000465514 LCE3AQ5TA76 89 aa3.34□□□□□ -1.87
USP39-212ENST00000465514 C10orf95Q9H7T3 257 aa3.34□□□□□ -1.87
USP39-212ENST00000465514 MIR22HGQ0VDD5 57 aa3.33□□□□□ -1.88
USP39-212ENST00000465514 A8MU10 97 aa3.31□□□□□ -1.88
USP39-212ENST00000465514 TNP1P09430 55 aa3.29□□□□□ -1.88
USP39-212ENST00000465514 KRTAP12-4P60329 112 aa3.26□□□□□ -1.89
USP39-212ENST00000465514 KRTAP5-1Q6L8H4 278 aa3.25□□□□□ -1.89
USP39-212ENST00000465514 KRTAP5-8O75690 187 aa3.24□□□□□ -1.89
USP39-212ENST00000465514 KRTAP5-5Q701N2 237 aaPredicted RBP3.23□□□□□ -1.89
USP39-212ENST00000465514 KRTAP12-3P60328 96 aa3.21□□□□□ -1.9
USP39-212ENST00000465514 K7ERS5 55 aa3.19□□□□□ -1.9
USP39-212ENST00000465514 PRAC1Q96KF2 57 aa3.13□□□□□ -1.91
USP39-212ENST00000465514 KRTAP4-4Q9BYR3 166 aa3.12□□□□□ -1.91
USP39-212ENST00000465514 SYNE1Q8NF91 8797 aaKnown RBP3.12□□□□□ -1.91
USP39-212ENST00000465514 A0A0A0MQY5 61 aa3.09□□□□□ -1.91
USP39-212ENST00000465514 KRTAP9-6A8MVA2 160 aa3.08□□□□□ -1.92
USP39-212ENST00000465514 KRTAP5-2Q701N4 177 aa3.07□□□□□ -1.92
USP39-212ENST00000465514 KRTAP25-1Q3LHN0 102 aa3.05□□□□□ -1.92
USP39-212ENST00000465514 ROMO1P60602 79 aa3.04□□□□□ -1.92
USP39-212ENST00000465514 OBSCNQ5VST9 7968 aa3.04□□□□□ -1.92
USP39-212ENST00000465514 LCE1FQ5T754 118 aa2.96□□□□□ -1.94
USP39-212ENST00000465514 LCE3CQ5T5A8 94 aa2.94□□□□□ -1.94
USP39-212ENST00000465514 MT1AP04731 61 aa2.91□□□□□ -1.94
USP39-212ENST00000465514 KRTAP6-1Q3LI64 71 aa2.91□□□□□ -1.94
USP39-212ENST00000465514 KRTAP6-2Q3LI66 62 aa2.84□□□□□ -1.95
USP39-212ENST00000465514 NDUFAF8A1L188 74 aa2.69□□□□□ -1.98
USP39-212ENST00000465514 LUZP6Q538Z0 58 aa2.65□□□□□ -1.99
USP39-212ENST00000465514 LCE3EQ5T5B0 92 aa2.54□□□□□ -2
USP39-212ENST00000465514 LCE1BQ5T7P3 118 aa2.44□□□□□ -2.02
USP39-212ENST00000465514 PHGR1C9JFL3 82 aa2.34□□□□□ -2.03
USP39-212ENST00000465514 LCE1CQ5T751 118 aa2.33□□□□□ -2.04
USP39-212ENST00000465514 INE1O15225 51 aa2.31□□□□□ -2.04
USP39-212ENST00000465514 LCE3DQ9BYE3 92 aa2.08□□□□□ -2.08
USP39-212ENST00000465514 MUC19Q7Z5P9 8384 aa1.92□□□□□ -2.1
USP39-212ENST00000465514 KRTAP21-2Q3LI59 83 aa1.92□□□□□ -2.1
USP39-212ENST00000465514 KRTAP21-1Q3LI58 79 aa1.77□□□□□ -2.13
USP39-212ENST00000465514 PRM1P04553 51 aa1.58□□□□□ -2.16
USP39-212ENST00000465514 MUC16Q8WXI7 14507 aa1.32□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 11.1 ms