RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 HIST2H2BEQ16778 126 aa0.3□□□□□ -2.36
USP40-211ENST00000464956 HIST2H2BFQ5QNW6 126 aaPredicted RBP0.3□□□□□ -2.36
USP40-211ENST00000464956 HIST1H2BHQ93079 126 aa0.3□□□□□ -2.36
USP40-211ENST00000464956 HIST1H2BNQ99877 126 aa0.3□□□□□ -2.36
USP40-211ENST00000464956 HIST1H2BMQ99879 126 aa0.3□□□□□ -2.36
USP40-211ENST00000464956 SEC61GP60059 68 aa0.29□□□□□ -2.36
USP40-211ENST00000464956 C14orf144Q96I85 54 aa0.29□□□□□ -2.36
USP40-211ENST00000464956 SERP1Q9Y6X1 66 aa0.29□□□□□ -2.36
USP40-211ENST00000464956 SMIM26A0A096LP01 95 aa0.28□□□□□ -2.36
USP40-211ENST00000464956 A0A1B0GU33 70 aa0.28□□□□□ -2.36
USP40-211ENST00000464956 H7BZZ5 65 aa0.28□□□□□ -2.36
USP40-211ENST00000464956 LCE3DQ9BYE3 92 aa0.28□□□□□ -2.36
USP40-211ENST00000464956 TAX1BP3O14907 124 aa0.27□□□□□ -2.37
USP40-211ENST00000464956 A8MU10 97 aa0.26□□□□□ -2.37
USP40-211ENST00000464956 HSD52Q0P140 79 aa0.26□□□□□ -2.37
USP40-211ENST00000464956 SPATA45Q537H7 98 aa0.25□□□□□ -2.37
USP40-211ENST00000464956 H3BT86 120 aa0.24□□□□□ -2.37
USP40-211ENST00000464956 LCE3EQ5T5B0 92 aa0.24□□□□□ -2.37
USP40-211ENST00000464956 SERP2Q8N6R1 65 aa0.24□□□□□ -2.37
USP40-211ENST00000464956 KRTAP23-1A1A580 65 aa0.23□□□□□ -2.37
USP40-211ENST00000464956 H3BPC8 53 aa0.23□□□□□ -2.37
USP40-211ENST00000464956 S100A2P29034 98 aa0.23□□□□□ -2.37
USP40-211ENST00000464956 HIST1H4AP62805 103 aaKnown RBP0.23□□□□□ -2.37
USP40-211ENST00000464956 PRO0461Q9UI25 63 aa0.23□□□□□ -2.37
USP40-211ENST00000464956 C9orf118A6NHY6 69 aa0.21□□□□□ -2.38
USP40-211ENST00000464956 RPS28P62857 69 aaKnown RBP0.21□□□□□ -2.38
USP40-211ENST00000464956 PRR15LQ9BU68 103 aa0.19□□□□□ -2.38
USP40-211ENST00000464956 OCR1Q9BZK8 76 aa0.19□□□□□ -2.38
USP40-211ENST00000464956 S100A1P23297 94 aa0.17□□□□□ -2.38
USP40-211ENST00000464956 A0A1B0GU69 56 aa0.16□□□□□ -2.38
USP40-211ENST00000464956 ATP5EP2Q5VTU8 51 aa0.16□□□□□ -2.38
USP40-211ENST00000464956 S100A6P06703 90 aa0.15□□□□□ -2.39
USP40-211ENST00000464956 UQCR10Q9UDW1 63 aa0.14□□□□□ -2.39
USP40-211ENST00000464956 M0R143 59 aa0.13□□□□□ -2.39
USP40-211ENST00000464956 COA5Q86WW8 74 aa0.13□□□□□ -2.39
USP40-211ENST00000464956 K7ERS5 55 aa0.11□□□□□ -2.39
USP40-211ENST00000464956 SNURFQ9Y675 71 aa0.07□□□□□ -2.4
USP40-211ENST00000464956 ETDBQ3ZM63 59 aa0.06□□□□□ -2.4
USP40-211ENST00000464956 LINC00643Q86TS7 51 aa0.06□□□□□ -2.4
USP40-211ENST00000464956 FAM240AA0A1B0GVK7 77 aa0.05□□□□□ -2.4
USP40-211ENST00000464956 UQCR11O14957 56 aa0.05□□□□□ -2.4
USP40-211ENST00000464956 PYY3Q5JQD4 70 aa0.04□□□□□ -2.4
USP40-211ENST00000464956 CDC42SE1Q9NRR8 79 aa0.04□□□□□ -2.4
USP40-211ENST00000464956 F8W1H4 67 aa0.02□□□□□ -2.41
USP40-211ENST00000464956 SMIM20Q8N5G0 67 aa0.02□□□□□ -2.41
USP40-211ENST00000464956 MIR22HGQ0VDD5 57 aa0.01□□□□□ -2.41
USP40-211ENST00000464956 NDUFAF8A1L188 74 aa0□□□□□ -2.41
USP40-211ENST00000464956 ROMO1P60602 79 aa0□□□□□ -2.41
USP40-211ENST00000464956 PRM1P04553 51 aa-0.02□□□□□ -2.41
USP40-211ENST00000464956 GTF2H5Q6ZYL4 71 aa-0.02□□□□□ -2.41
USP40-211ENST00000464956 Q1T7F1 81 aa-0.03□□□□□ -2.41
USP40-211ENST00000464956 LINC01558Q9Y6Z2 57 aa-0.05□□□□□ -2.42
USP40-211ENST00000464956 COL5A1-AS1Q5SY13 56 aa-0.06□□□□□ -2.42
USP40-211ENST00000464956 PRAC1Q96KF2 57 aa-0.11□□□□□ -2.43
USP40-211ENST00000464956 J3QR89 54 aa-0.14□□□□□ -2.43
USP40-211ENST00000464956 SMIM6P0DI80 62 aa-0.15□□□□□ -2.43
USP40-211ENST00000464956 A0A0A0MQY5 61 aa-0.17□□□□□ -2.44
USP40-211ENST00000464956 A6NED7 52 aa-0.17□□□□□ -2.44
USP40-211ENST00000464956 PSPHP1O15172 72 aa-0.17□□□□□ -2.44
USP40-211ENST00000464956 TMA7Q9Y2S6 64 aaKnown RBP-0.18□□□□□ -2.44
USP40-211ENST00000464956 COX7CP15954 63 aa-0.19□□□□□ -2.44
USP40-211ENST00000464956 ATP5EP56381 51 aaPredicted RBP-0.21□□□□□ -2.44
USP40-211ENST00000464956 TMEM258P61165 79 aa-0.22□□□□□ -2.44
USP40-211ENST00000464956 V9GYY9 64 aa-0.23□□□□□ -2.45
USP40-211ENST00000464956 PCP4P48539 62 aa-0.24□□□□□ -2.45
USP40-211ENST00000464956 LUZP6Q538Z0 58 aa-0.25□□□□□ -2.45
USP40-211ENST00000464956 A0A1B0GV90 55 aa-0.27□□□□□ -2.45
USP40-211ENST00000464956 K7ERU9 68 aa-0.3□□□□□ -2.46
USP40-211ENST00000464956 PCP4L1A6NKN8 68 aa-0.32□□□□□ -2.46
USP40-211ENST00000464956 BRK1Q8WUW1 75 aa-0.32□□□□□ -2.46
USP40-211ENST00000464956 ANAPC13Q9BS18 74 aa-0.33□□□□□ -2.46
USP40-211ENST00000464956 CCDC179H3BU77 68 aa-0.34□□□□□ -2.46
USP40-211ENST00000464956 LOC105371267A0A1B0GV96 52 aa-0.38□□□□□ -2.47
USP40-211ENST00000464956 PMAIP1Q13794 54 aa-0.51□□□□□ -2.49
USP40-211ENST00000464956 SVIPQ8NHG7 77 aa-0.54□□□□□ -2.5
USP40-211ENST00000464956 INE1O15225 51 aa-0.55□□□□□ -2.5
USP40-211ENST00000464956 KTN1-AS1Q86SY8 53 aa-0.61□□□□□ -2.51
USP40-211ENST00000464956 PRO0628Q9UI54 55 aa-0.7□□□□□ -2.52
Retrieved 78 of 20,778 RNA–protein pairs in 62.5 ms