RNA–Protein interactions for RNA: ENST00000463020.1

SND1-203, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 2

Gene SND1, Length 793 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-203ENST00000463020 LINC01554Q52M75 96 aa6.34□□□□□ -1.39
SND1-203ENST00000463020 PLAC4Q8WY50 150 aa6.34□□□□□ -1.39
SND1-203ENST00000463020 DSTQ03001 7570 aaKnown RBP6.28□□□□□ -1.4
SND1-203ENST00000463020 KRTAP10-12P60413 245 aa6.24□□□□□ -1.41
SND1-203ENST00000463020 KRTAP4-9Q9BYQ8 210 aa6.18□□□□□ -1.42
SND1-203ENST00000463020 CAMK2N1Q7Z7J9 78 aa6.12□□□□□ -1.43
SND1-203ENST00000463020 C10orf95Q9H7T3 257 aa6.07□□□□□ -1.44
SND1-203ENST00000463020 LCE5AQ5TCM9 118 aa5.99□□□□□ -1.45
SND1-203ENST00000463020 HMCN1Q96RW7 5635 aa5.96□□□□□ -1.45
SND1-203ENST00000463020 LCE1DQ5T752 114 aa5.95□□□□□ -1.46
SND1-203ENST00000463020 KRTAP19-7Q3SYF9 63 aa5.94□□□□□ -1.46
SND1-203ENST00000463020 AHNAK2Q8IVF2 5795 aa5.92□□□□□ -1.46
SND1-203ENST00000463020 PP632Q6XCG6 107 aa5.91□□□□□ -1.46
SND1-203ENST00000463020 MT1EP04732 61 aa5.89□□□□□ -1.47
SND1-203ENST00000463020 TNP1P09430 55 aa5.88□□□□□ -1.47
SND1-203ENST00000463020 KRTAP19-3Q7Z4W3 81 aa5.88□□□□□ -1.47
SND1-203ENST00000463020 MT4P47944 62 aa5.83□□□□□ -1.48
SND1-203ENST00000463020 KRTAP23-1A1A580 65 aa5.79□□□□□ -1.48
SND1-203ENST00000463020 KRTAP5-10Q6L8G5 202 aa5.76□□□□□ -1.49
SND1-203ENST00000463020 LCE4AQ5TA78 99 aa5.72□□□□□ -1.49
SND1-203ENST00000463020 KRTAP15-1Q3LI76 137 aa5.68□□□□□ -1.5
SND1-203ENST00000463020 KRTAP19-5Q3LI72 72 aa5.66□□□□□ -1.5
SND1-203ENST00000463020 KRTAP4-6Q9BYQ5 205 aa5.66□□□□□ -1.5
SND1-203ENST00000463020 MT1GP13640 62 aa5.65□□□□□ -1.5
SND1-203ENST00000463020 MT1MQ8N339 61 aa5.63□□□□□ -1.51
SND1-203ENST00000463020 KRTAP4-3Q9BYR4 195 aa5.63□□□□□ -1.51
SND1-203ENST00000463020 KRTAP5-4Q6L8H1 288 aa5.62□□□□□ -1.51
SND1-203ENST00000463020 KRTAP5-7Q6L8G8 165 aa5.55□□□□□ -1.52
SND1-203ENST00000463020 MT1LQ93083 61 aa5.55□□□□□ -1.52
SND1-203ENST00000463020 KRTAP5-3Q6L8H2 238 aa5.5□□□□□ -1.53
SND1-203ENST00000463020 LCE3AQ5TA76 89 aa5.49□□□□□ -1.53
SND1-203ENST00000463020 NDUFAF8A1L188 74 aa5.42□□□□□ -1.54
SND1-203ENST00000463020 LUZP6Q538Z0 58 aa5.39□□□□□ -1.55
SND1-203ENST00000463020 KRTAP4-7Q9BYR0 210 aa5.36□□□□□ -1.55
SND1-203ENST00000463020 LOC100996750A0A140TA64 210 aa5.35□□□□□ -1.55
SND1-203ENST00000463020 KRTAP20-2Q3LI61 65 aa5.34□□□□□ -1.55
SND1-203ENST00000463020 SPRR5A0A1B0GTR4 108 aa5.31□□□□□ -1.56
SND1-203ENST00000463020 H3BS24 57 aa5.31□□□□□ -1.56
SND1-203ENST00000463020 KRTAP12-3P60328 96 aa5.29□□□□□ -1.56
SND1-203ENST00000463020 KRTAP5-5Q701N2 237 aaPredicted RBP5.23□□□□□ -1.57
SND1-203ENST00000463020 SYNE1Q8NF91 8797 aaKnown RBP5.16□□□□□ -1.58
SND1-203ENST00000463020 KRTAP12-4P60329 112 aa5.06□□□□□ -1.6
SND1-203ENST00000463020 KRTAP19-4Q3LI73 84 aa4.99□□□□□ -1.61
SND1-203ENST00000463020 AHNAKQ09666 5890 aaKnown RBP4.98□□□□□ -1.61
SND1-203ENST00000463020 LCE3CQ5T5A8 94 aa4.96□□□□□ -1.62
SND1-203ENST00000463020 KRTAP4-11Q9BYQ6 195 aa4.96□□□□□ -1.62
SND1-203ENST00000463020 MUC5ACP98088 5654 aa4.95□□□□□ -1.62
SND1-203ENST00000463020 A0A0A0MQY5 61 aa4.93□□□□□ -1.62
SND1-203ENST00000463020 MUC5BQ9HC84 5762 aaPredicted RBP4.93□□□□□ -1.62
SND1-203ENST00000463020 KRTAP5-2Q701N4 177 aa4.86□□□□□ -1.63
SND1-203ENST00000463020 KRTAP5-8O75690 187 aa4.84□□□□□ -1.63
SND1-203ENST00000463020 KRTAP6-1Q3LI64 71 aa4.75□□□□□ -1.65
SND1-203ENST00000463020 OBSCNQ5VST9 7968 aa4.7□□□□□ -1.66
SND1-203ENST00000463020 MT1AP04731 61 aa4.68□□□□□ -1.66
SND1-203ENST00000463020 KRTAP9-6A8MVA2 160 aa4.61□□□□□ -1.67
SND1-203ENST00000463020 KRTAP6-2Q3LI66 62 aa4.61□□□□□ -1.67
SND1-203ENST00000463020 KRTAP9-9Q9BYP9 154 aa4.58□□□□□ -1.68
SND1-203ENST00000463020 KRTAP9-4Q9BYQ2 154 aa4.57□□□□□ -1.68
SND1-203ENST00000463020 INE1O15225 51 aa4.54□□□□□ -1.68
SND1-203ENST00000463020 KRTAP5-1Q6L8H4 278 aa4.45□□□□□ -1.7
SND1-203ENST00000463020 KRTAP4-12Q9BQ66 201 aa4.37□□□□□ -1.71
SND1-203ENST00000463020 MT3P25713 68 aa4.25□□□□□ -1.73
SND1-203ENST00000463020 KRTAP4-2Q9BYR5 136 aa4.12□□□□□ -1.75
SND1-203ENST00000463020 LCE1EQ5T753 118 aa4□□□□□ -1.77
SND1-203ENST00000463020 LCE1BQ5T7P3 118 aa3.88□□□□□ -1.79
SND1-203ENST00000463020 LCE3DQ9BYE3 92 aa3.79□□□□□ -1.8
SND1-203ENST00000463020 LCE1CQ5T751 118 aa3.74□□□□□ -1.81
SND1-203ENST00000463020 LCE3EQ5T5B0 92 aa3.73□□□□□ -1.81
SND1-203ENST00000463020 KRTAP5-11Q6L8G4 156 aa3.51□□□□□ -1.85
SND1-203ENST00000463020 PRM1P04553 51 aa3.38□□□□□ -1.87
SND1-203ENST00000463020 LCE1FQ5T754 118 aa3.38□□□□□ -1.87
SND1-203ENST00000463020 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.35□□□□□ -1.87
SND1-203ENST00000463020 PHGR1C9JFL3 82 aa3.34□□□□□ -1.87
SND1-203ENST00000463020 KRTAP21-2Q3LI59 83 aa3.14□□□□□ -1.91
SND1-203ENST00000463020 KRTAP4-4Q9BYR3 166 aa2.99□□□□□ -1.93
SND1-203ENST00000463020 MUC19Q7Z5P9 8384 aa2.92□□□□□ -1.94
SND1-203ENST00000463020 KRTAP21-1Q3LI58 79 aa2.49□□□□□ -2.01
SND1-203ENST00000463020 MUC16Q8WXI7 14507 aa2.05□□□□□ -2.08
Retrieved 78 of 20,778 RNA–protein pairs in 86.7 ms