RNA–Protein interactions for RNA: ENST00000462613.1

SF3B1-206, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 3

Gene SF3B1, Length 141 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-206ENST00000462613 KRTAP12-3P60328 96 aa2.32□□□□□ -2.04
SF3B1-206ENST00000462613 KRTAP19-3Q7Z4W3 81 aa2.32□□□□□ -2.04
SF3B1-206ENST00000462613 MDN1Q9NU22 5596 aa2.31□□□□□ -2.04
SF3B1-206ENST00000462613 GPR98Q8WXG9 6306 aa2.31□□□□□ -2.04
SF3B1-206ENST00000462613 KRTAP2-3P0C7H8 128 aa2.31□□□□□ -2.04
SF3B1-206ENST00000462613 KRTAP2-4Q9BYR9 128 aa2.31□□□□□ -2.04
SF3B1-206ENST00000462613 MT1GP13640 62 aa2.3□□□□□ -2.04
SF3B1-206ENST00000462613 LCE5AQ5TCM9 118 aa2.29□□□□□ -2.04
SF3B1-206ENST00000462613 PMAIP1Q13794 54 aa2.27□□□□□ -2.05
SF3B1-206ENST00000462613 MT1LQ93083 61 aa2.27□□□□□ -2.05
SF3B1-206ENST00000462613 KRTAP19-4Q3LI73 84 aa2.26□□□□□ -2.05
SF3B1-206ENST00000462613 LCE3BQ5TA77 95 aa2.26□□□□□ -2.05
SF3B1-206ENST00000462613 KRTAP2-2Q9BYT5 123 aa2.25□□□□□ -2.05
SF3B1-206ENST00000462613 KRTAP2-1Q9BYU5 128 aa2.25□□□□□ -2.05
SF3B1-206ENST00000462613 KRTAP15-1Q3LI76 137 aa2.23□□□□□ -2.05
SF3B1-206ENST00000462613 MT1MQ8N339 61 aa2.23□□□□□ -2.05
SF3B1-206ENST00000462613 PRO0628Q9UI54 55 aa2.21□□□□□ -2.06
SF3B1-206ENST00000462613 DSTQ03001 7570 aaKnown RBP2.14□□□□□ -2.07
SF3B1-206ENST00000462613 LCE3CQ5T5A8 94 aa2.14□□□□□ -2.07
SF3B1-206ENST00000462613 KRTAP4-3Q9BYR4 195 aa2.13□□□□□ -2.07
SF3B1-206ENST00000462613 KRTAP4-7Q9BYR0 210 aa2.12□□□□□ -2.07
SF3B1-206ENST00000462613 LCE4AQ5TA78 99 aa2.09□□□□□ -2.07
SF3B1-206ENST00000462613 KTN1-AS1Q86SY8 53 aa2.09□□□□□ -2.07
SF3B1-206ENST00000462613 PRAC1Q96KF2 57 aa2.08□□□□□ -2.08
SF3B1-206ENST00000462613 MT4P47944 62 aa2.03□□□□□ -2.08
SF3B1-206ENST00000462613 SVIPQ8NHG7 77 aa2.03□□□□□ -2.08
SF3B1-206ENST00000462613 KRTAP4-9Q9BYQ8 210 aa2.03□□□□□ -2.08
SF3B1-206ENST00000462613 KRTAP5-4Q6L8H1 288 aa2.02□□□□□ -2.09
SF3B1-206ENST00000462613 LOC100996750A0A140TA64 210 aa2.01□□□□□ -2.09
SF3B1-206ENST00000462613 LCE1DQ5T752 114 aa2.01□□□□□ -2.09
SF3B1-206ENST00000462613 KRTAP12-4P60329 112 aa2□□□□□ -2.09
SF3B1-206ENST00000462613 KRTAP5-5Q701N2 237 aaPredicted RBP2□□□□□ -2.09
SF3B1-206ENST00000462613 AHNAK2Q8IVF2 5795 aa1.97□□□□□ -2.09
SF3B1-206ENST00000462613 HMCN1Q96RW7 5635 aa1.97□□□□□ -2.09
SF3B1-206ENST00000462613 SPRR5A0A1B0GTR4 108 aa1.95□□□□□ -2.1
SF3B1-206ENST00000462613 MT1AP04731 61 aa1.95□□□□□ -2.1
SF3B1-206ENST00000462613 KRTAP9-6A8MVA2 160 aa1.94□□□□□ -2.1
SF3B1-206ENST00000462613 KRTAP4-6Q9BYQ5 205 aa1.94□□□□□ -2.1
SF3B1-206ENST00000462613 KRTAP20-2Q3LI61 65 aa1.92□□□□□ -2.1
SF3B1-206ENST00000462613 KRTAP6-1Q3LI64 71 aa1.9□□□□□ -2.11
SF3B1-206ENST00000462613 SYNE1Q8NF91 8797 aaKnown RBP1.88□□□□□ -2.11
SF3B1-206ENST00000462613 KRTAP9-4Q9BYQ2 154 aa1.87□□□□□ -2.11
SF3B1-206ENST00000462613 LUZP6Q538Z0 58 aa1.86□□□□□ -2.11
SF3B1-206ENST00000462613 KRTAP5-10Q6L8G5 202 aa1.84□□□□□ -2.11
SF3B1-206ENST00000462613 KRTAP5-3Q6L8H2 238 aa1.82□□□□□ -2.12
SF3B1-206ENST00000462613 MT3P25713 68 aa1.8□□□□□ -2.12
SF3B1-206ENST00000462613 KRTAP6-2Q3LI66 62 aa1.8□□□□□ -2.12
SF3B1-206ENST00000462613 KRTAP5-7Q6L8G8 165 aa1.8□□□□□ -2.12
SF3B1-206ENST00000462613 KRTAP5-2Q701N4 177 aa1.79□□□□□ -2.12
SF3B1-206ENST00000462613 AHNAKQ09666 5890 aaKnown RBP1.78□□□□□ -2.12
SF3B1-206ENST00000462613 KRTAP4-11Q9BYQ6 195 aa1.72□□□□□ -2.13
SF3B1-206ENST00000462613 OBSCNQ5VST9 7968 aa1.66□□□□□ -2.14
SF3B1-206ENST00000462613 MUC5ACP98088 5654 aa1.66□□□□□ -2.14
SF3B1-206ENST00000462613 MUC5BQ9HC84 5762 aaPredicted RBP1.65□□□□□ -2.14
SF3B1-206ENST00000462613 KRTAP5-8O75690 187 aa1.64□□□□□ -2.15
SF3B1-206ENST00000462613 LCE1EQ5T753 118 aa1.6□□□□□ -2.15
SF3B1-206ENST00000462613 LCE3DQ9BYE3 92 aa1.6□□□□□ -2.15
SF3B1-206ENST00000462613 KRTAP9-9Q9BYP9 154 aa1.59□□□□□ -2.15
SF3B1-206ENST00000462613 NDUFAF8A1L188 74 aa1.57□□□□□ -2.16
SF3B1-206ENST00000462613 KRTAP5-1Q6L8H4 278 aa1.57□□□□□ -2.16
SF3B1-206ENST00000462613 LCE3EQ5T5B0 92 aa1.53□□□□□ -2.16
SF3B1-206ENST00000462613 LCE1BQ5T7P3 118 aa1.51□□□□□ -2.17
SF3B1-206ENST00000462613 LCE1CQ5T751 118 aa1.48□□□□□ -2.17
SF3B1-206ENST00000462613 KRTAP4-2Q9BYR5 136 aa1.46□□□□□ -2.18
SF3B1-206ENST00000462613 A0A0A0MQY5 61 aa1.4□□□□□ -2.19
SF3B1-206ENST00000462613 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.36□□□□□ -2.19
SF3B1-206ENST00000462613 INE1O15225 51 aa1.33□□□□□ -2.2
SF3B1-206ENST00000462613 KRTAP5-11Q6L8G4 156 aa1.33□□□□□ -2.2
SF3B1-206ENST00000462613 LCE1FQ5T754 118 aa1.28□□□□□ -2.2
SF3B1-206ENST00000462613 KRTAP4-12Q9BQ66 201 aa1.28□□□□□ -2.2
SF3B1-206ENST00000462613 KRTAP21-2Q3LI59 83 aa1.24□□□□□ -2.21
SF3B1-206ENST00000462613 PRM1P04553 51 aa1.22□□□□□ -2.21
SF3B1-206ENST00000462613 PHGR1C9JFL3 82 aa1.16□□□□□ -2.22
SF3B1-206ENST00000462613 KRTAP4-4Q9BYR3 166 aa1.11□□□□□ -2.23
SF3B1-206ENST00000462613 MUC19Q7Z5P9 8384 aa1.02□□□□□ -2.25
SF3B1-206ENST00000462613 H3BS24 57 aa1□□□□□ -2.25
SF3B1-206ENST00000462613 KRTAP21-1Q3LI58 79 aa0.85□□□□□ -2.27
SF3B1-206ENST00000462613 MUC16Q8WXI7 14507 aa0.71□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 31.1 ms