RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 CCDC179H3BU77 68 aa3.77□□□□□ -1.81
SF3A3-204ENST00000462258 KRTAP19-3Q7Z4W3 81 aa3.77□□□□□ -1.81
SF3A3-204ENST00000462258 A8MU10 97 aa3.76□□□□□ -1.81
SF3A3-204ENST00000462258 ATP5EP56381 51 aaPredicted RBP3.75□□□□□ -1.81
SF3A3-204ENST00000462258 KRTAP19-5Q3LI72 72 aa3.72□□□□□ -1.81
SF3A3-204ENST00000462258 PRR15LQ9BU68 103 aa3.71□□□□□ -1.82
SF3A3-204ENST00000462258 DSTQ03001 7570 aaKnown RBP3.7□□□□□ -1.82
SF3A3-204ENST00000462258 RPS28P62857 69 aaKnown RBP3.7□□□□□ -1.82
SF3A3-204ENST00000462258 V9GYY9 64 aa3.67□□□□□ -1.82
SF3A3-204ENST00000462258 TNP1P09430 55 aa3.66□□□□□ -1.82
SF3A3-204ENST00000462258 MT1GP13640 62 aa3.66□□□□□ -1.82
SF3A3-204ENST00000462258 C10orf95Q9H7T3 257 aa3.66□□□□□ -1.82
SF3A3-204ENST00000462258 LINC01558Q9Y6Z2 57 aa3.66□□□□□ -1.82
SF3A3-204ENST00000462258 LCE3AQ5TA76 89 aa3.65□□□□□ -1.83
SF3A3-204ENST00000462258 PP632Q6XCG6 107 aa3.65□□□□□ -1.83
SF3A3-204ENST00000462258 PRO0628Q9UI54 55 aa3.65□□□□□ -1.83
SF3A3-204ENST00000462258 TMEM258P61165 79 aa3.64□□□□□ -1.83
SF3A3-204ENST00000462258 MT1LQ93083 61 aa3.63□□□□□ -1.83
SF3A3-204ENST00000462258 MT1MQ8N339 61 aa3.62□□□□□ -1.83
SF3A3-204ENST00000462258 UQCR11O14957 56 aa3.58□□□□□ -1.84
SF3A3-204ENST00000462258 GPR98Q8WXG9 6306 aa3.57□□□□□ -1.84
SF3A3-204ENST00000462258 A0A0A0MQY5 61 aa3.56□□□□□ -1.84
SF3A3-204ENST00000462258 KRTAP4-3Q9BYR4 195 aa3.52□□□□□ -1.85
SF3A3-204ENST00000462258 HMCN1Q96RW7 5635 aa3.51□□□□□ -1.85
SF3A3-204ENST00000462258 KRTAP12-3P60328 96 aa3.5□□□□□ -1.85
SF3A3-204ENST00000462258 MIR22HGQ0VDD5 57 aa3.5□□□□□ -1.85
SF3A3-204ENST00000462258 MT4P47944 62 aa3.48□□□□□ -1.85
SF3A3-204ENST00000462258 PMAIP1Q13794 54 aa3.45□□□□□ -1.86
SF3A3-204ENST00000462258 KRTAP25-1Q3LHN0 102 aa3.45□□□□□ -1.86
SF3A3-204ENST00000462258 K7ERS5 55 aa3.44□□□□□ -1.86
SF3A3-204ENST00000462258 KRTAP5-4Q6L8H1 288 aa3.44□□□□□ -1.86
SF3A3-204ENST00000462258 PSPHP1O15172 72 aa3.43□□□□□ -1.86
SF3A3-204ENST00000462258 Q1T7F1 81 aa3.4□□□□□ -1.87
SF3A3-204ENST00000462258 AHNAK2Q8IVF2 5795 aa3.38□□□□□ -1.87
SF3A3-204ENST00000462258 BRK1Q8WUW1 75 aa3.33□□□□□ -1.88
SF3A3-204ENST00000462258 A6NED7 52 aa3.32□□□□□ -1.88
SF3A3-204ENST00000462258 KRTAP5-5Q701N2 237 aaPredicted RBP3.32□□□□□ -1.88
SF3A3-204ENST00000462258 KTN1-AS1Q86SY8 53 aa3.29□□□□□ -1.88
SF3A3-204ENST00000462258 KRTAP5-10Q6L8G5 202 aa3.27□□□□□ -1.89
SF3A3-204ENST00000462258 KRTAP20-2Q3LI61 65 aa3.26□□□□□ -1.89
SF3A3-204ENST00000462258 CDC42SE1Q9NRR8 79 aa3.26□□□□□ -1.89
SF3A3-204ENST00000462258 SPRR5A0A1B0GTR4 108 aa3.23□□□□□ -1.89
SF3A3-204ENST00000462258 KRTAP12-4P60329 112 aa3.22□□□□□ -1.89
SF3A3-204ENST00000462258 LCE3CQ5T5A8 94 aa3.21□□□□□ -1.9
SF3A3-204ENST00000462258 ROMO1P60602 79 aa3.2□□□□□ -1.9
SF3A3-204ENST00000462258 SYNE1Q8NF91 8797 aaKnown RBP3.19□□□□□ -1.9
SF3A3-204ENST00000462258 MT3P25713 68 aa3.17□□□□□ -1.9
SF3A3-204ENST00000462258 KRTAP5-7Q6L8G8 165 aa3.14□□□□□ -1.91
SF3A3-204ENST00000462258 MT1AP04731 61 aa3.09□□□□□ -1.91
SF3A3-204ENST00000462258 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.08□□□□□ -1.92
SF3A3-204ENST00000462258 KRTAP6-1Q3LI64 71 aa3.06□□□□□ -1.92
SF3A3-204ENST00000462258 KRTAP5-11Q6L8G4 156 aa3.06□□□□□ -1.92
SF3A3-204ENST00000462258 KRTAP9-6A8MVA2 160 aa3.03□□□□□ -1.92
SF3A3-204ENST00000462258 KRTAP5-2Q701N4 177 aa3.02□□□□□ -1.93
SF3A3-204ENST00000462258 PRAC1Q96KF2 57 aa2.94□□□□□ -1.94
SF3A3-204ENST00000462258 KRTAP6-2Q3LI66 62 aa2.93□□□□□ -1.94
SF3A3-204ENST00000462258 NDUFAF8A1L188 74 aa2.87□□□□□ -1.95
SF3A3-204ENST00000462258 KRTAP5-8O75690 187 aa2.87□□□□□ -1.95
SF3A3-204ENST00000462258 LCE1EQ5T753 118 aa2.87□□□□□ -1.95
SF3A3-204ENST00000462258 LCE1FQ5T754 118 aa2.87□□□□□ -1.95
SF3A3-204ENST00000462258 OBSCNQ5VST9 7968 aa2.8□□□□□ -1.96
SF3A3-204ENST00000462258 MUC5BQ9HC84 5762 aaPredicted RBP2.79□□□□□ -1.96
SF3A3-204ENST00000462258 AHNAKQ09666 5890 aaKnown RBP2.78□□□□□ -1.96
SF3A3-204ENST00000462258 MUC5ACP98088 5654 aa2.77□□□□□ -1.97
SF3A3-204ENST00000462258 LUZP6Q538Z0 58 aa2.72□□□□□ -1.97
SF3A3-204ENST00000462258 KRTAP5-1Q6L8H4 278 aa2.7□□□□□ -1.98
SF3A3-204ENST00000462258 KRTAP4-4Q9BYR3 166 aa2.59□□□□□ -1.99
SF3A3-204ENST00000462258 LCE3EQ5T5B0 92 aa2.46□□□□□ -2.02
SF3A3-204ENST00000462258 LCE1BQ5T7P3 118 aa2.44□□□□□ -2.02
SF3A3-204ENST00000462258 LCE1CQ5T751 118 aa2.39□□□□□ -2.03
SF3A3-204ENST00000462258 LCE3DQ9BYE3 92 aa2.31□□□□□ -2.04
SF3A3-204ENST00000462258 INE1O15225 51 aa2.28□□□□□ -2.04
SF3A3-204ENST00000462258 KRTAP21-2Q3LI59 83 aa2.01□□□□□ -2.09
SF3A3-204ENST00000462258 PHGR1C9JFL3 82 aa1.91□□□□□ -2.1
SF3A3-204ENST00000462258 MUC19Q7Z5P9 8384 aa1.73□□□□□ -2.13
SF3A3-204ENST00000462258 PRM1P04553 51 aa1.64□□□□□ -2.15
SF3A3-204ENST00000462258 KRTAP21-1Q3LI58 79 aa1.45□□□□□ -2.18
SF3A3-204ENST00000462258 MUC16Q8WXI7 14507 aa1.19□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 136.4 ms