RNA–Protein interactions for RNA: ENST00000461437.5

NUP50-213, Transcript of nucleoporin 50, humanhuman

TSL 4

Gene NUP50, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-213ENST00000461437 TNP1P09430 55 aa5.44□□□□□ -1.54
NUP50-213ENST00000461437 PCP4P48539 62 aa5.44□□□□□ -1.54
NUP50-213ENST00000461437 LINC01558Q9Y6Z2 57 aa5.44□□□□□ -1.54
NUP50-213ENST00000461437 MT4P47944 62 aa5.42□□□□□ -1.54
NUP50-213ENST00000461437 AHNAK2Q8IVF2 5795 aa5.41□□□□□ -1.54
NUP50-213ENST00000461437 TMEM258P61165 79 aa5.39□□□□□ -1.55
NUP50-213ENST00000461437 LCE4AQ5TA78 99 aa5.39□□□□□ -1.55
NUP50-213ENST00000461437 KRTAP5-10Q6L8G5 202 aa5.35□□□□□ -1.55
NUP50-213ENST00000461437 KRTAP4-7Q9BYR0 210 aa5.34□□□□□ -1.55
NUP50-213ENST00000461437 UQCR11O14957 56 aa5.33□□□□□ -1.56
NUP50-213ENST00000461437 KRTAP5-4Q6L8H1 288 aa5.27□□□□□ -1.57
NUP50-213ENST00000461437 KRTAP12-3P60328 96 aa5.26□□□□□ -1.57
NUP50-213ENST00000461437 KRTAP4-6Q9BYQ5 205 aa5.26□□□□□ -1.57
NUP50-213ENST00000461437 MIR22HGQ0VDD5 57 aa5.21□□□□□ -1.58
NUP50-213ENST00000461437 KRTAP5-7Q6L8G8 165 aa5.2□□□□□ -1.58
NUP50-213ENST00000461437 K7ERS5 55 aa5.12□□□□□ -1.59
NUP50-213ENST00000461437 PSPHP1O15172 72 aa5.12□□□□□ -1.59
NUP50-213ENST00000461437 KRTAP5-3Q6L8H2 238 aa5.12□□□□□ -1.59
NUP50-213ENST00000461437 V9GYY9 64 aa5.12□□□□□ -1.59
NUP50-213ENST00000461437 KRTAP25-1Q3LHN0 102 aa5.09□□□□□ -1.59
NUP50-213ENST00000461437 Q1T7F1 81 aa5.07□□□□□ -1.6
NUP50-213ENST00000461437 LOC100996750A0A140TA64 210 aa5.06□□□□□ -1.6
NUP50-213ENST00000461437 KRTAP5-5Q701N2 237 aaPredicted RBP5.05□□□□□ -1.6
NUP50-213ENST00000461437 RPS28P62857 69 aaKnown RBP5.04□□□□□ -1.6
NUP50-213ENST00000461437 SYNE1Q8NF91 8797 aaKnown RBP5.04□□□□□ -1.6
NUP50-213ENST00000461437 KRTAP20-2Q3LI61 65 aa5.01□□□□□ -1.61
NUP50-213ENST00000461437 SPRR5A0A1B0GTR4 108 aa4.98□□□□□ -1.61
NUP50-213ENST00000461437 A6NED7 52 aa4.95□□□□□ -1.62
NUP50-213ENST00000461437 KRTAP12-4P60329 112 aa4.89□□□□□ -1.63
NUP50-213ENST00000461437 KRTAP23-1A1A580 65 aa4.88□□□□□ -1.63
NUP50-213ENST00000461437 KRTAP15-1Q3LI76 137 aa4.88□□□□□ -1.63
NUP50-213ENST00000461437 KRTAP19-4Q3LI73 84 aa4.84□□□□□ -1.63
NUP50-213ENST00000461437 LCE3CQ5T5A8 94 aa4.84□□□□□ -1.63
NUP50-213ENST00000461437 CDC42SE1Q9NRR8 79 aa4.84□□□□□ -1.63
NUP50-213ENST00000461437 ROMO1P60602 79 aa4.75□□□□□ -1.65
NUP50-213ENST00000461437 KRTAP6-1Q3LI64 71 aa4.71□□□□□ -1.66
NUP50-213ENST00000461437 MT1AP04731 61 aa4.67□□□□□ -1.66
NUP50-213ENST00000461437 KRTAP9-6A8MVA2 160 aa4.64□□□□□ -1.67
NUP50-213ENST00000461437 KRTAP4-11Q9BYQ6 195 aa4.62□□□□□ -1.67
NUP50-213ENST00000461437 KRTAP5-2Q701N4 177 aa4.61□□□□□ -1.67
NUP50-213ENST00000461437 MUC5ACP98088 5654 aa4.54□□□□□ -1.68
NUP50-213ENST00000461437 AHNAKQ09666 5890 aaKnown RBP4.54□□□□□ -1.68
NUP50-213ENST00000461437 MUC5BQ9HC84 5762 aaPredicted RBP4.53□□□□□ -1.68
NUP50-213ENST00000461437 KRTAP9-4Q9BYQ2 154 aa4.52□□□□□ -1.69
NUP50-213ENST00000461437 KRTAP6-2Q3LI66 62 aa4.5□□□□□ -1.69
NUP50-213ENST00000461437 KRTAP5-8O75690 187 aa4.48□□□□□ -1.69
NUP50-213ENST00000461437 OBSCNQ5VST9 7968 aa4.47□□□□□ -1.69
NUP50-213ENST00000461437 BRK1Q8WUW1 75 aa4.46□□□□□ -1.7
NUP50-213ENST00000461437 PRO0628Q9UI54 55 aa4.41□□□□□ -1.7
NUP50-213ENST00000461437 KRTAP9-9Q9BYP9 154 aa4.32□□□□□ -1.72
NUP50-213ENST00000461437 MT3P25713 68 aa4.25□□□□□ -1.73
NUP50-213ENST00000461437 PMAIP1Q13794 54 aa4.25□□□□□ -1.73
NUP50-213ENST00000461437 KRTAP5-1Q6L8H4 278 aa4.16□□□□□ -1.74
NUP50-213ENST00000461437 KTN1-AS1Q86SY8 53 aa4.08□□□□□ -1.76
NUP50-213ENST00000461437 SVIPQ8NHG7 77 aa4.02□□□□□ -1.77
NUP50-213ENST00000461437 KRTAP4-12Q9BQ66 201 aa4.01□□□□□ -1.77
NUP50-213ENST00000461437 LCE1EQ5T753 118 aa3.88□□□□□ -1.79
NUP50-213ENST00000461437 PRAC1Q96KF2 57 aa3.86□□□□□ -1.79
NUP50-213ENST00000461437 LCE1BQ5T7P3 118 aa3.78□□□□□ -1.8
NUP50-213ENST00000461437 KRTAP4-2Q9BYR5 136 aa3.76□□□□□ -1.81
NUP50-213ENST00000461437 LCE1CQ5T751 118 aa3.62□□□□□ -1.83
NUP50-213ENST00000461437 H3BS24 57 aa3.48□□□□□ -1.85
NUP50-213ENST00000461437 LCE3DQ9BYE3 92 aa3.45□□□□□ -1.86
NUP50-213ENST00000461437 LUZP6Q538Z0 58 aa3.33□□□□□ -1.88
NUP50-213ENST00000461437 KRTAP5-11Q6L8G4 156 aa3.29□□□□□ -1.88
NUP50-213ENST00000461437 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.27□□□□□ -1.89
NUP50-213ENST00000461437 LCE3EQ5T5B0 92 aa3.23□□□□□ -1.89
NUP50-213ENST00000461437 LCE1FQ5T754 118 aa3.23□□□□□ -1.89
NUP50-213ENST00000461437 PHGR1C9JFL3 82 aa3.14□□□□□ -1.91
NUP50-213ENST00000461437 NDUFAF8A1L188 74 aa3.12□□□□□ -1.91
NUP50-213ENST00000461437 KRTAP21-2Q3LI59 83 aa3.08□□□□□ -1.92
NUP50-213ENST00000461437 KRTAP4-4Q9BYR3 166 aa2.92□□□□□ -1.94
NUP50-213ENST00000461437 A0A0A0MQY5 61 aa2.88□□□□□ -1.95
NUP50-213ENST00000461437 MUC19Q7Z5P9 8384 aa2.78□□□□□ -1.97
NUP50-213ENST00000461437 INE1O15225 51 aa2.71□□□□□ -1.98
NUP50-213ENST00000461437 PRM1P04553 51 aa2.44□□□□□ -2.02
NUP50-213ENST00000461437 KRTAP21-1Q3LI58 79 aa2.38□□□□□ -2.03
NUP50-213ENST00000461437 MUC16Q8WXI7 14507 aa1.93□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 6.2 ms