RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 RPS28P62857 69 aaKnown RBP5.09□□□□□ -1.59
HDAC4-207ENST00000461113 A8MU10 97 aa5.08□□□□□ -1.6
HDAC4-207ENST00000461113 KRTAP12-1P59990 96 aa5.08□□□□□ -1.6
HDAC4-207ENST00000461113 PSPHP1O15172 72 aa5.06□□□□□ -1.6
HDAC4-207ENST00000461113 KRTAP12-2P59991 146 aa5.06□□□□□ -1.6
HDAC4-207ENST00000461113 MIR22HGQ0VDD5 57 aa5.04□□□□□ -1.6
HDAC4-207ENST00000461113 KRTAP5-3Q6L8H2 238 aa5.02□□□□□ -1.61
HDAC4-207ENST00000461113 K7ERS5 55 aa5□□□□□ -1.61
HDAC4-207ENST00000461113 A6NED7 52 aa4.96□□□□□ -1.62
HDAC4-207ENST00000461113 KRTAP10-7P60409 375 aaPredicted RBP4.96□□□□□ -1.62
HDAC4-207ENST00000461113 KRTAP10-12P60413 245 aa4.95□□□□□ -1.62
HDAC4-207ENST00000461113 SVIPQ8NHG7 77 aa4.95□□□□□ -1.62
HDAC4-207ENST00000461113 HMCN1Q96RW7 5635 aa4.87□□□□□ -1.63
HDAC4-207ENST00000461113 TNP1P09430 55 aa4.87□□□□□ -1.63
HDAC4-207ENST00000461113 AHNAK2Q8IVF2 5795 aa4.83□□□□□ -1.64
HDAC4-207ENST00000461113 C10orf95Q9H7T3 257 aa4.82□□□□□ -1.64
HDAC4-207ENST00000461113 KRTAP5-10Q6L8G5 202 aa4.78□□□□□ -1.64
HDAC4-207ENST00000461113 CDC42SE1Q9NRR8 79 aa4.75□□□□□ -1.65
HDAC4-207ENST00000461113 KRTAP25-1Q3LHN0 102 aa4.71□□□□□ -1.66
HDAC4-207ENST00000461113 MT4P47944 62 aa4.7□□□□□ -1.66
HDAC4-207ENST00000461113 KRTAP5-7Q6L8G8 165 aa4.68□□□□□ -1.66
HDAC4-207ENST00000461113 LCE3AQ5TA76 89 aa4.65□□□□□ -1.67
HDAC4-207ENST00000461113 KRTAP19-5Q3LI72 72 aa4.63□□□□□ -1.67
HDAC4-207ENST00000461113 KRTAP19-7Q3SYF9 63 aa4.62□□□□□ -1.67
HDAC4-207ENST00000461113 ROMO1P60602 79 aa4.61□□□□□ -1.67
HDAC4-207ENST00000461113 SPRR5A0A1B0GTR4 108 aa4.6□□□□□ -1.67
HDAC4-207ENST00000461113 MT1EP04732 61 aa4.6□□□□□ -1.67
HDAC4-207ENST00000461113 BRK1Q8WUW1 75 aa4.55□□□□□ -1.68
HDAC4-207ENST00000461113 KRTAP23-1A1A580 65 aa4.53□□□□□ -1.68
HDAC4-207ENST00000461113 KRTAP19-3Q7Z4W3 81 aa4.53□□□□□ -1.68
HDAC4-207ENST00000461113 KRTAP12-3P60328 96 aa4.52□□□□□ -1.69
HDAC4-207ENST00000461113 PP632Q6XCG6 107 aa4.51□□□□□ -1.69
HDAC4-207ENST00000461113 MT1GP13640 62 aa4.48□□□□□ -1.69
HDAC4-207ENST00000461113 MT1LQ93083 61 aa4.44□□□□□ -1.7
HDAC4-207ENST00000461113 KRTAP5-4Q6L8H1 288 aa4.42□□□□□ -1.7
HDAC4-207ENST00000461113 MT1MQ8N339 61 aa4.36□□□□□ -1.71
HDAC4-207ENST00000461113 KRTAP15-1Q3LI76 137 aa4.35□□□□□ -1.71
HDAC4-207ENST00000461113 PMAIP1Q13794 54 aa4.31□□□□□ -1.72
HDAC4-207ENST00000461113 PRO0628Q9UI54 55 aa4.24□□□□□ -1.73
HDAC4-207ENST00000461113 AHNAKQ09666 5890 aaKnown RBP4.24□□□□□ -1.73
HDAC4-207ENST00000461113 KRTAP20-2Q3LI61 65 aa4.23□□□□□ -1.73
HDAC4-207ENST00000461113 KRTAP4-3Q9BYR4 195 aa4.23□□□□□ -1.73
HDAC4-207ENST00000461113 LCE3CQ5T5A8 94 aa4.17□□□□□ -1.74
HDAC4-207ENST00000461113 MUC5ACP98088 5654 aa4.12□□□□□ -1.75
HDAC4-207ENST00000461113 MUC5BQ9HC84 5762 aaPredicted RBP4.09□□□□□ -1.75
HDAC4-207ENST00000461113 KRTAP12-4P60329 112 aa4.02□□□□□ -1.77
HDAC4-207ENST00000461113 PRAC1Q96KF2 57 aa4□□□□□ -1.77
HDAC4-207ENST00000461113 KRTAP5-5Q701N2 237 aaPredicted RBP3.96□□□□□ -1.78
HDAC4-207ENST00000461113 KTN1-AS1Q86SY8 53 aa3.95□□□□□ -1.78
HDAC4-207ENST00000461113 KRTAP5-8O75690 187 aa3.94□□□□□ -1.78
HDAC4-207ENST00000461113 SYNE1Q8NF91 8797 aaKnown RBP3.94□□□□□ -1.78
HDAC4-207ENST00000461113 KRTAP9-6A8MVA2 160 aa3.82□□□□□ -1.8
HDAC4-207ENST00000461113 MT1AP04731 61 aa3.8□□□□□ -1.8
HDAC4-207ENST00000461113 KRTAP5-2Q701N4 177 aa3.75□□□□□ -1.81
HDAC4-207ENST00000461113 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.74□□□□□ -1.81
HDAC4-207ENST00000461113 KRTAP6-1Q3LI64 71 aa3.73□□□□□ -1.81
HDAC4-207ENST00000461113 OBSCNQ5VST9 7968 aa3.72□□□□□ -1.81
HDAC4-207ENST00000461113 KRTAP5-11Q6L8G4 156 aa3.71□□□□□ -1.82
HDAC4-207ENST00000461113 KRTAP6-2Q3LI66 62 aa3.54□□□□□ -1.84
HDAC4-207ENST00000461113 MT3P25713 68 aa3.51□□□□□ -1.85
HDAC4-207ENST00000461113 LUZP6Q538Z0 58 aa3.5□□□□□ -1.85
HDAC4-207ENST00000461113 KRTAP5-1Q6L8H4 278 aa3.5□□□□□ -1.85
HDAC4-207ENST00000461113 LCE1EQ5T753 118 aa3.49□□□□□ -1.85
HDAC4-207ENST00000461113 A0A0A0MQY5 61 aa3.36□□□□□ -1.87
HDAC4-207ENST00000461113 KRTAP4-4Q9BYR3 166 aa3.14□□□□□ -1.91
HDAC4-207ENST00000461113 LCE3DQ9BYE3 92 aa3.09□□□□□ -1.91
HDAC4-207ENST00000461113 NDUFAF8A1L188 74 aa3.05□□□□□ -1.92
HDAC4-207ENST00000461113 LCE1BQ5T7P3 118 aa3.02□□□□□ -1.93
HDAC4-207ENST00000461113 LCE3EQ5T5B0 92 aa2.95□□□□□ -1.94
HDAC4-207ENST00000461113 LCE1FQ5T754 118 aa2.91□□□□□ -1.94
HDAC4-207ENST00000461113 LCE1CQ5T751 118 aa2.9□□□□□ -1.95
HDAC4-207ENST00000461113 PHGR1C9JFL3 82 aa2.83□□□□□ -1.96
HDAC4-207ENST00000461113 INE1O15225 51 aa2.66□□□□□ -1.98
HDAC4-207ENST00000461113 KRTAP21-2Q3LI59 83 aa2.43□□□□□ -2.02
HDAC4-207ENST00000461113 PRM1P04553 51 aa2.35□□□□□ -2.03
HDAC4-207ENST00000461113 MUC19Q7Z5P9 8384 aa2.34□□□□□ -2.04
HDAC4-207ENST00000461113 KRTAP21-1Q3LI58 79 aa2.14□□□□□ -2.07
HDAC4-207ENST00000461113 MUC16Q8WXI7 14507 aa1.58□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 76 ms