RNA–Protein interactions for RNA: ENST00000459860.1

SSNA1-202, Transcript of SS nuclear autoantigen 1, humanhuman

TSL 1 (best)

Gene SSNA1, Length 1,170 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSNA1-202ENST00000459860 LCE3AQ5TA76 89 aa8□□□□□ -1.13
SSNA1-202ENST00000459860 KRTAP19-3Q7Z4W3 81 aa7.95□□□□□ -1.14
SSNA1-202ENST00000459860 DSTQ03001 7570 aaKnown RBP7.92□□□□□ -1.14
SSNA1-202ENST00000459860 LCE5AQ5TCM9 118 aa7.9□□□□□ -1.14
SSNA1-202ENST00000459860 KRTAP25-1Q3LHN0 102 aa7.89□□□□□ -1.15
SSNA1-202ENST00000459860 KRTAP4-9Q9BYQ8 210 aa7.82□□□□□ -1.16
SSNA1-202ENST00000459860 MT1GP13640 62 aa7.8□□□□□ -1.16
SSNA1-202ENST00000459860 PP632Q6XCG6 107 aa7.8□□□□□ -1.16
SSNA1-202ENST00000459860 MT1LQ93083 61 aa7.75□□□□□ -1.17
SSNA1-202ENST00000459860 CDC42SE1Q9NRR8 79 aa7.73□□□□□ -1.17
SSNA1-202ENST00000459860 KRTAP12-3P60328 96 aa7.72□□□□□ -1.17
SSNA1-202ENST00000459860 MT1MQ8N339 61 aa7.66□□□□□ -1.18
SSNA1-202ENST00000459860 ROMO1P60602 79 aa7.6□□□□□ -1.19
SSNA1-202ENST00000459860 KRTAP23-1A1A580 65 aa7.59□□□□□ -1.19
SSNA1-202ENST00000459860 LCE1DQ5T752 114 aa7.59□□□□□ -1.19
SSNA1-202ENST00000459860 HMCN1Q96RW7 5635 aa7.55□□□□□ -1.2
SSNA1-202ENST00000459860 LCE4AQ5TA78 99 aa7.46□□□□□ -1.22
SSNA1-202ENST00000459860 KRTAP4-3Q9BYR4 195 aa7.43□□□□□ -1.22
SSNA1-202ENST00000459860 MT4P47944 62 aa7.42□□□□□ -1.22
SSNA1-202ENST00000459860 AHNAK2Q8IVF2 5795 aa7.41□□□□□ -1.22
SSNA1-202ENST00000459860 KRTAP4-7Q9BYR0 210 aa7.35□□□□□ -1.23
SSNA1-202ENST00000459860 KRTAP19-4Q3LI73 84 aa7.33□□□□□ -1.24
SSNA1-202ENST00000459860 KRTAP15-1Q3LI76 137 aa7.32□□□□□ -1.24
SSNA1-202ENST00000459860 KRTAP5-4Q6L8H1 288 aa7.31□□□□□ -1.24
SSNA1-202ENST00000459860 KRTAP5-10Q6L8G5 202 aa7.28□□□□□ -1.24
SSNA1-202ENST00000459860 BRK1Q8WUW1 75 aa7.25□□□□□ -1.25
SSNA1-202ENST00000459860 KRTAP4-6Q9BYQ5 205 aa7.23□□□□□ -1.25
SSNA1-202ENST00000459860 LCE3CQ5T5A8 94 aa7.12□□□□□ -1.27
SSNA1-202ENST00000459860 KRTAP5-7Q6L8G8 165 aa7.04□□□□□ -1.28
SSNA1-202ENST00000459860 KRTAP5-3Q6L8H2 238 aa7□□□□□ -1.29
SSNA1-202ENST00000459860 KRTAP5-5Q701N2 237 aaPredicted RBP6.96□□□□□ -1.3
SSNA1-202ENST00000459860 LOC100996750A0A140TA64 210 aa6.95□□□□□ -1.3
SSNA1-202ENST00000459860 KRTAP20-2Q3LI61 65 aa6.9□□□□□ -1.3
SSNA1-202ENST00000459860 PMAIP1Q13794 54 aa6.82□□□□□ -1.32
SSNA1-202ENST00000459860 SPRR5A0A1B0GTR4 108 aa6.81□□□□□ -1.32
SSNA1-202ENST00000459860 KRTAP12-4P60329 112 aa6.79□□□□□ -1.32
SSNA1-202ENST00000459860 SYNE1Q8NF91 8797 aaKnown RBP6.71□□□□□ -1.34
SSNA1-202ENST00000459860 KRTAP9-6A8MVA2 160 aa6.64□□□□□ -1.35
SSNA1-202ENST00000459860 MT1AP04731 61 aa6.62□□□□□ -1.35
SSNA1-202ENST00000459860 KRTAP6-1Q3LI64 71 aa6.53□□□□□ -1.36
SSNA1-202ENST00000459860 PRO0628Q9UI54 55 aa6.53□□□□□ -1.36
SSNA1-202ENST00000459860 PRAC1Q96KF2 57 aa6.46□□□□□ -1.38
SSNA1-202ENST00000459860 KRTAP4-11Q9BYQ6 195 aa6.39□□□□□ -1.39
SSNA1-202ENST00000459860 KRTAP9-4Q9BYQ2 154 aa6.35□□□□□ -1.39
SSNA1-202ENST00000459860 KRTAP5-2Q701N4 177 aa6.34□□□□□ -1.39
SSNA1-202ENST00000459860 KRTAP5-8O75690 187 aa6.21□□□□□ -1.42
SSNA1-202ENST00000459860 KTN1-AS1Q86SY8 53 aa6.21□□□□□ -1.42
SSNA1-202ENST00000459860 AHNAKQ09666 5890 aaKnown RBP6.2□□□□□ -1.42
SSNA1-202ENST00000459860 KRTAP6-2Q3LI66 62 aa6.2□□□□□ -1.42
SSNA1-202ENST00000459860 MUC5BQ9HC84 5762 aaPredicted RBP6.18□□□□□ -1.42
SSNA1-202ENST00000459860 MUC5ACP98088 5654 aa6.16□□□□□ -1.42
SSNA1-202ENST00000459860 MT3P25713 68 aa6.07□□□□□ -1.44
SSNA1-202ENST00000459860 OBSCNQ5VST9 7968 aa5.99□□□□□ -1.45
SSNA1-202ENST00000459860 SVIPQ8NHG7 77 aa5.98□□□□□ -1.45
SSNA1-202ENST00000459860 KRTAP9-9Q9BYP9 154 aa5.89□□□□□ -1.47
SSNA1-202ENST00000459860 KRTAP5-1Q6L8H4 278 aa5.76□□□□□ -1.49
SSNA1-202ENST00000459860 LUZP6Q538Z0 58 aa5.52□□□□□ -1.53
SSNA1-202ENST00000459860 LCE1EQ5T753 118 aa5.47□□□□□ -1.53
SSNA1-202ENST00000459860 LCE3DQ9BYE3 92 aa5.22□□□□□ -1.57
SSNA1-202ENST00000459860 LCE1BQ5T7P3 118 aa5.15□□□□□ -1.59
SSNA1-202ENST00000459860 KRTAP4-2Q9BYR5 136 aa5.12□□□□□ -1.59
SSNA1-202ENST00000459860 LCE1CQ5T751 118 aa5.07□□□□□ -1.6
SSNA1-202ENST00000459860 LCE3EQ5T5B0 92 aa4.96□□□□□ -1.62
SSNA1-202ENST00000459860 KRTAP4-12Q9BQ66 201 aa4.74□□□□□ -1.65
SSNA1-202ENST00000459860 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.64□□□□□ -1.67
SSNA1-202ENST00000459860 NDUFAF8A1L188 74 aa4.63□□□□□ -1.67
SSNA1-202ENST00000459860 KRTAP5-11Q6L8G4 156 aa4.57□□□□□ -1.68
SSNA1-202ENST00000459860 LCE1FQ5T754 118 aa4.48□□□□□ -1.69
SSNA1-202ENST00000459860 KRTAP21-2Q3LI59 83 aa4.28□□□□□ -1.72
SSNA1-202ENST00000459860 PHGR1C9JFL3 82 aa4.22□□□□□ -1.73
SSNA1-202ENST00000459860 KRTAP4-4Q9BYR3 166 aa3.89□□□□□ -1.79
SSNA1-202ENST00000459860 PRM1P04553 51 aa3.88□□□□□ -1.79
SSNA1-202ENST00000459860 A0A0A0MQY5 61 aa3.85□□□□□ -1.79
SSNA1-202ENST00000459860 H3BS24 57 aa3.79□□□□□ -1.8
SSNA1-202ENST00000459860 INE1O15225 51 aa3.79□□□□□ -1.8
SSNA1-202ENST00000459860 MUC19Q7Z5P9 8384 aa3.74□□□□□ -1.81
SSNA1-202ENST00000459860 KRTAP21-1Q3LI58 79 aa3.2□□□□□ -1.9
SSNA1-202ENST00000459860 MUC16Q8WXI7 14507 aa2.64□□□□□ -1.99
Retrieved 78 of 20,778 RNA–protein pairs in 82.8 ms