RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 TNP1P09430 55 aa5.87□□□□□ -1.47
COL7A1-203ENST00000459756 DSTQ03001 7570 aaKnown RBP5.84□□□□□ -1.47
COL7A1-203ENST00000459756 MT1GP13640 62 aa5.83□□□□□ -1.48
COL7A1-203ENST00000459756 PP632Q6XCG6 107 aa5.79□□□□□ -1.48
COL7A1-203ENST00000459756 LCE3AQ5TA76 89 aa5.78□□□□□ -1.48
COL7A1-203ENST00000459756 CDC42SE1Q9NRR8 79 aa5.75□□□□□ -1.49
COL7A1-203ENST00000459756 MT1LQ93083 61 aa5.74□□□□□ -1.49
COL7A1-203ENST00000459756 MT1MQ8N339 61 aa5.71□□□□□ -1.5
COL7A1-203ENST00000459756 GPR98Q8WXG9 6306 aa5.7□□□□□ -1.5
COL7A1-203ENST00000459756 KRTAP25-1Q3LHN0 102 aa5.67□□□□□ -1.5
COL7A1-203ENST00000459756 KRTAP4-9Q9BYQ8 210 aa5.63□□□□□ -1.51
COL7A1-203ENST00000459756 KRTAP12-3P60328 96 aa5.58□□□□□ -1.52
COL7A1-203ENST00000459756 ROMO1P60602 79 aa5.58□□□□□ -1.52
COL7A1-203ENST00000459756 LCE4AQ5TA78 99 aa5.55□□□□□ -1.52
COL7A1-203ENST00000459756 KRTAP4-3Q9BYR4 195 aa5.55□□□□□ -1.52
COL7A1-203ENST00000459756 BRK1Q8WUW1 75 aa5.53□□□□□ -1.52
COL7A1-203ENST00000459756 LCE1DQ5T752 114 aa5.52□□□□□ -1.53
COL7A1-203ENST00000459756 HMCN1Q96RW7 5635 aa5.46□□□□□ -1.54
COL7A1-203ENST00000459756 MT4P47944 62 aa5.46□□□□□ -1.54
COL7A1-203ENST00000459756 KRTAP5-4Q6L8H1 288 aa5.44□□□□□ -1.54
COL7A1-203ENST00000459756 KRTAP4-7Q9BYR0 210 aa5.43□□□□□ -1.54
COL7A1-203ENST00000459756 KRTAP23-1A1A580 65 aa5.4□□□□□ -1.54
COL7A1-203ENST00000459756 AHNAK2Q8IVF2 5795 aa5.33□□□□□ -1.56
COL7A1-203ENST00000459756 KRTAP19-4Q3LI73 84 aa5.31□□□□□ -1.56
COL7A1-203ENST00000459756 KRTAP4-6Q9BYQ5 205 aa5.31□□□□□ -1.56
COL7A1-203ENST00000459756 SVIPQ8NHG7 77 aa5.27□□□□□ -1.57
COL7A1-203ENST00000459756 KRTAP15-1Q3LI76 137 aa5.25□□□□□ -1.57
COL7A1-203ENST00000459756 KRTAP5-5Q701N2 237 aaPredicted RBP5.24□□□□□ -1.57
COL7A1-203ENST00000459756 PMAIP1Q13794 54 aa5.18□□□□□ -1.58
COL7A1-203ENST00000459756 LOC100996750A0A140TA64 210 aa5.15□□□□□ -1.59
COL7A1-203ENST00000459756 KRTAP5-10Q6L8G5 202 aa5.15□□□□□ -1.59
COL7A1-203ENST00000459756 LCE3CQ5T5A8 94 aa5.14□□□□□ -1.59
COL7A1-203ENST00000459756 PRO0628Q9UI54 55 aa5.14□□□□□ -1.59
COL7A1-203ENST00000459756 SPRR5A0A1B0GTR4 108 aa5.13□□□□□ -1.59
COL7A1-203ENST00000459756 KRTAP20-2Q3LI61 65 aa5.13□□□□□ -1.59
COL7A1-203ENST00000459756 KRTAP12-4P60329 112 aa5.12□□□□□ -1.59
COL7A1-203ENST00000459756 SYNE1Q8NF91 8797 aaKnown RBP5.03□□□□□ -1.6
COL7A1-203ENST00000459756 KRTAP5-3Q6L8H2 238 aa5.01□□□□□ -1.61
COL7A1-203ENST00000459756 PRAC1Q96KF2 57 aa4.97□□□□□ -1.61
COL7A1-203ENST00000459756 KRTAP5-7Q6L8G8 165 aa4.94□□□□□ -1.62
COL7A1-203ENST00000459756 MT1AP04731 61 aa4.89□□□□□ -1.63
COL7A1-203ENST00000459756 KRTAP6-1Q3LI64 71 aa4.85□□□□□ -1.63
COL7A1-203ENST00000459756 KRTAP9-6A8MVA2 160 aa4.83□□□□□ -1.64
COL7A1-203ENST00000459756 KTN1-AS1Q86SY8 53 aa4.78□□□□□ -1.64
COL7A1-203ENST00000459756 KRTAP5-2Q701N4 177 aa4.77□□□□□ -1.65
COL7A1-203ENST00000459756 KRTAP9-4Q9BYQ2 154 aa4.72□□□□□ -1.65
COL7A1-203ENST00000459756 KRTAP4-11Q9BYQ6 195 aa4.68□□□□□ -1.66
COL7A1-203ENST00000459756 KRTAP6-2Q3LI66 62 aa4.64□□□□□ -1.67
COL7A1-203ENST00000459756 KRTAP5-8O75690 187 aa4.52□□□□□ -1.69
COL7A1-203ENST00000459756 MT3P25713 68 aa4.48□□□□□ -1.69
COL7A1-203ENST00000459756 OBSCNQ5VST9 7968 aa4.47□□□□□ -1.69
COL7A1-203ENST00000459756 AHNAKQ09666 5890 aaKnown RBP4.43□□□□□ -1.7
COL7A1-203ENST00000459756 MUC5ACP98088 5654 aa4.38□□□□□ -1.71
COL7A1-203ENST00000459756 MUC5BQ9HC84 5762 aaPredicted RBP4.38□□□□□ -1.71
COL7A1-203ENST00000459756 KRTAP9-9Q9BYP9 154 aa4.3□□□□□ -1.72
COL7A1-203ENST00000459756 KRTAP5-1Q6L8H4 278 aa4.26□□□□□ -1.73
COL7A1-203ENST00000459756 H3BS24 57 aa4.24□□□□□ -1.73
COL7A1-203ENST00000459756 LCE1EQ5T753 118 aa4.12□□□□□ -1.75
COL7A1-203ENST00000459756 LUZP6Q538Z0 58 aa4.1□□□□□ -1.75
COL7A1-203ENST00000459756 KRTAP4-12Q9BQ66 201 aa3.96□□□□□ -1.78
COL7A1-203ENST00000459756 KRTAP4-2Q9BYR5 136 aa3.86□□□□□ -1.79
COL7A1-203ENST00000459756 LCE1BQ5T7P3 118 aa3.85□□□□□ -1.79
COL7A1-203ENST00000459756 LCE1CQ5T751 118 aa3.82□□□□□ -1.8
COL7A1-203ENST00000459756 LCE3DQ9BYE3 92 aa3.75□□□□□ -1.81
COL7A1-203ENST00000459756 NDUFAF8A1L188 74 aa3.62□□□□□ -1.83
COL7A1-203ENST00000459756 LCE3EQ5T5B0 92 aa3.57□□□□□ -1.84
COL7A1-203ENST00000459756 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.48□□□□□ -1.85
COL7A1-203ENST00000459756 KRTAP5-11Q6L8G4 156 aa3.45□□□□□ -1.86
COL7A1-203ENST00000459756 LCE1FQ5T754 118 aa3.37□□□□□ -1.87
COL7A1-203ENST00000459756 A0A0A0MQY5 61 aa3.2□□□□□ -1.9
COL7A1-203ENST00000459756 KRTAP21-2Q3LI59 83 aa3.2□□□□□ -1.9
COL7A1-203ENST00000459756 INE1O15225 51 aa3.08□□□□□ -1.92
COL7A1-203ENST00000459756 PHGR1C9JFL3 82 aa2.99□□□□□ -1.93
COL7A1-203ENST00000459756 PRM1P04553 51 aa2.9□□□□□ -1.95
COL7A1-203ENST00000459756 KRTAP4-4Q9BYR3 166 aa2.9□□□□□ -1.95
COL7A1-203ENST00000459756 MUC19Q7Z5P9 8384 aa2.76□□□□□ -1.97
COL7A1-203ENST00000459756 KRTAP21-1Q3LI58 79 aa2.27□□□□□ -2.05
COL7A1-203ENST00000459756 MUC16Q8WXI7 14507 aa1.97□□□□□ -2.09
Retrieved 78 of 20,778 RNA–protein pairs in 123.5 ms