RNA–Protein interactions for RNA: ENST00000457745.1

RIF1-208, Transcript of replication timing regulatory factor 1, human

TSL 1 (best)

Gene RIF1, Length 1,006 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RIF1-208	ENST00000457745	CRCT1	Q9UGL9	99 aa		3.54	□□□□□ -1.84
RIF1-208	ENST00000457745	ROMO1	P60602	79 aa		3.52	□□□□□ -1.85
RIF1-208	ENST00000457745	PRAC1	Q96KF2	57 aa		3.51	□□□□□ -1.85
RIF1-208	ENST00000457745	KRTAP5-1	Q6L8H4	278 aa		3.49	□□□□□ -1.85
RIF1-208	ENST00000457745	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	3.48	□□□□□ -1.85
RIF1-208	ENST00000457745	KRTAP10-12	P60413	245 aa		3.43	□□□□□ -1.86
RIF1-208	ENST00000457745	PRO2289	Q9P1D8	64 aa		3.42	□□□□□ -1.86
RIF1-208	ENST00000457745	LCE3A	Q5TA76	89 aa		3.41	□□□□□ -1.86
RIF1-208	ENST00000457745	KTN1-AS1	Q86SY8	53 aa		3.41	□□□□□ -1.86
RIF1-208	ENST00000457745	TNP1	P09430	55 aa		3.39	□□□□□ -1.87
RIF1-208	ENST00000457745	KRTAP5-9	P26371	169 aa		3.39	□□□□□ -1.87
RIF1-208	ENST00000457745	KRTAP25-1	Q3LHN0	102 aa		3.39	□□□□□ -1.87
RIF1-208	ENST00000457745	KRTAP5-4	Q6L8H1	288 aa		3.38	□□□□□ -1.87
RIF1-208	ENST00000457745	KMT2D	O14686	5537 aa		3.37	□□□□□ -1.87
RIF1-208	ENST00000457745	KRTAP4-4	Q9BYR3	166 aa		3.37	□□□□□ -1.87
RIF1-208	ENST00000457745	KRTAP19-5	Q3LI72	72 aa		3.29	□□□□□ -1.88
RIF1-208	ENST00000457745	KRTAP19-7	Q3SYF9	63 aa		3.29	□□□□□ -1.88
RIF1-208	ENST00000457745	MACF1	Q9UPN3	7388 aa	Known RBP	3.29	□□□□□ -1.88
RIF1-208	ENST00000457745	KRTAP8-1	Q8IUC2	63 aa		3.28	□□□□□ -1.88
RIF1-208	ENST00000457745	LCE1F	Q5T754	118 aa		3.22	□□□□□ -1.89
RIF1-208	ENST00000457745	SYNE2	Q8WXH0	6885 aa	Known RBP	3.22	□□□□□ -1.89
RIF1-208	ENST00000457745	MT1E	P04732	61 aa		3.21	□□□□□ -1.9
RIF1-208	ENST00000457745	KRTAP12-3	P60328	96 aa		3.21	□□□□□ -1.9
RIF1-208	ENST00000457745	NDUFAF8	A1L188	74 aa		3.2	□□□□□ -1.9
RIF1-208	ENST00000457745	PP632	Q6XCG6	107 aa		3.19	□□□□□ -1.9
RIF1-208	ENST00000457745	MT1L	Q93083	61 aa		3.14	□□□□□ -1.91
RIF1-208	ENST00000457745	SPRR2F	Q96RM1	72 aa		3.14	□□□□□ -1.91
RIF1-208	ENST00000457745	MUC12	Q9UKN1	5478 aa		3.13	□□□□□ -1.91
RIF1-208	ENST00000457745	KRTAP6-3	Q3LI67	103 aa		3.12	□□□□□ -1.91
RIF1-208	ENST00000457745	KRTAP9-6	A8MVA2	160 aa		3.1	□□□□□ -1.91
RIF1-208	ENST00000457745	KRTAP4-3	Q9BYR4	195 aa		3.07	□□□□□ -1.92
RIF1-208	ENST00000457745	LCE3C	Q5T5A8	94 aa		3.06	□□□□□ -1.92
RIF1-208	ENST00000457745	KRTAP19-3	Q7Z4W3	81 aa		3.05	□□□□□ -1.92
RIF1-208	ENST00000457745	MT1M	Q8N339	61 aa		3.03	□□□□□ -1.92
RIF1-208	ENST00000457745	NEB	P20929	6669 aa		3.02	□□□□□ -1.93
RIF1-208	ENST00000457745	OBSCN	Q5VST9	7968 aa		3.02	□□□□□ -1.93
RIF1-208	ENST00000457745	SPRR2E	P22531	72 aa		3.01	□□□□□ -1.93
RIF1-208	ENST00000457745	SPRR2B	P35325	72 aa		3.01	□□□□□ -1.93
RIF1-208	ENST00000457745	SPRR2A	P35326	72 aa		3.01	□□□□□ -1.93
RIF1-208	ENST00000457745	MDN1	Q9NU22	5596 aa		2.99	□□□□□ -1.93
RIF1-208	ENST00000457745	MT1G	P13640	62 aa		2.97	□□□□□ -1.93
RIF1-208	ENST00000457745	SPRR5	A0A1B0GTR4	108 aa		2.96	□□□□□ -1.94
RIF1-208	ENST00000457745	SPRR2D	P22532	72 aa		2.88	□□□□□ -1.95
RIF1-208	ENST00000457745	KRTAP5-2	Q701N4	177 aa		2.84	□□□□□ -1.95
RIF1-208	ENST00000457745	KRTAP20-1	Q3LI63	56 aa		2.82	□□□□□ -1.96
RIF1-208	ENST00000457745	DST	Q03001	7570 aa	Known RBP	2.81	□□□□□ -1.96
RIF1-208	ENST00000457745	KRTAP2-3	P0C7H8	128 aa		2.81	□□□□□ -1.96
RIF1-208	ENST00000457745	KRTAP2-4	Q9BYR9	128 aa		2.81	□□□□□ -1.96
RIF1-208	ENST00000457745	LCE3E	Q5T5B0	92 aa		2.79	□□□□□ -1.96
RIF1-208	ENST00000457745	KRTAP5-5	Q701N2	237 aa	Predicted RBP	2.75	□□□□□ -1.97
RIF1-208	ENST00000457745	KRTAP2-1	Q9BYU5	128 aa		2.72	□□□□□ -1.97
RIF1-208	ENST00000457745	KRTAP6-1	Q3LI64	71 aa		2.67	□□□□□ -1.98
RIF1-208	ENST00000457745	SYNE1	Q8NF91	8797 aa	Known RBP	2.64	□□□□□ -1.99
RIF1-208	ENST00000457745	MT1A	P04731	61 aa		2.64	□□□□□ -1.99
RIF1-208	ENST00000457745	LUZP6	Q538Z0	58 aa		2.61	□□□□□ -1.99
RIF1-208	ENST00000457745	MT4	P47944	62 aa		2.55	□□□□□ -2
RIF1-208	ENST00000457745	KRTAP20-2	Q3LI61	65 aa		2.46	□□□□□ -2.02
RIF1-208	ENST00000457745	KRTAP6-2	Q3LI66	62 aa		2.45	□□□□□ -2.02
RIF1-208	ENST00000457745	HMCN1	Q96RW7	5635 aa		2.43	□□□□□ -2.02
RIF1-208	ENST00000457745	KRTAP12-4	P60329	112 aa		2.42	□□□□□ -2.02
RIF1-208	ENST00000457745	GPR98	Q8WXG9	6306 aa		2.41	□□□□□ -2.02
RIF1-208	ENST00000457745	KRTAP5-8	O75690	187 aa		2.41	□□□□□ -2.02
RIF1-208	ENST00000457745	AHNAK2	Q8IVF2	5795 aa		2.32	□□□□□ -2.04
RIF1-208	ENST00000457745	LCE1C	Q5T751	118 aa		2.3	□□□□□ -2.04
RIF1-208	ENST00000457745	LCE1B	Q5T7P3	118 aa		2.3	□□□□□ -2.04
RIF1-208	ENST00000457745	LCE3D	Q9BYE3	92 aa		2.27	□□□□□ -2.05
RIF1-208	ENST00000457745	KRTAP5-10	Q6L8G5	202 aa		2.22	□□□□□ -2.05
RIF1-208	ENST00000457745	KRTAP5-7	Q6L8G8	165 aa		2.13	□□□□□ -2.07
RIF1-208	ENST00000457745	INE1	O15225	51 aa		2.08	□□□□□ -2.08
RIF1-208	ENST00000457745	MUC5AC	P98088	5654 aa		1.97	□□□□□ -2.09
RIF1-208	ENST00000457745	MUC19	Q7Z5P9	8384 aa		1.96	□□□□□ -2.1
RIF1-208	ENST00000457745	AHNAK	Q09666	5890 aa	Known RBP	1.95	□□□□□ -2.1
RIF1-208	ENST00000457745	MUC5B	Q9HC84	5762 aa	Predicted RBP	1.91	□□□□□ -2.1
RIF1-208	ENST00000457745	PRM1	P04553	51 aa		1.89	□□□□□ -2.11
RIF1-208	ENST00000457745	KRTAP21-2	Q3LI59	83 aa		1.75	□□□□□ -2.13
RIF1-208	ENST00000457745	PHGR1	C9JFL3	82 aa		1.48	□□□□□ -2.17
RIF1-208	ENST00000457745	KRTAP21-1	Q3LI58	79 aa		1.14	□□□□□ -2.23
RIF1-208	ENST00000457745	MUC16	Q8WXI7	14507 aa		0.96	□□□□□ -2.26

Retrieved 78 of 20,778 RNA–protein pairs in 37.1 ms