RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, human

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF4-208	ENST00000452047	KRTAP25-1	Q3LHN0	102 aa		4.69	□□□□□ -1.66
CPSF4-208	ENST00000452047		A0A0D9SG42	100 aa		4.68	□□□□□ -1.66
CPSF4-208	ENST00000452047	ROMO1	P60602	79 aa		4.68	□□□□□ -1.66
CPSF4-208	ENST00000452047	LCE5A	Q5TCM9	118 aa		4.67	□□□□□ -1.66
CPSF4-208	ENST00000452047	MT1E	P04732	61 aa		4.66	□□□□□ -1.66
CPSF4-208	ENST00000452047	KRTAP19-3	Q7Z4W3	81 aa		4.63	□□□□□ -1.67
CPSF4-208	ENST00000452047	KRTAP12-1	P59990	96 aa		4.62	□□□□□ -1.67
CPSF4-208	ENST00000452047	SPINT4	Q6UDR6	99 aa		4.61	□□□□□ -1.67
CPSF4-208	ENST00000452047	DST	Q03001	7570 aa	Known RBP	4.6	□□□□□ -1.67
CPSF4-208	ENST00000452047	KRTAP4-9	Q9BYQ8	210 aa		4.58	□□□□□ -1.68
CPSF4-208	ENST00000452047	KRTAP19-5	Q3LI72	72 aa		4.55	□□□□□ -1.68
CPSF4-208	ENST00000452047	MT1G	P13640	62 aa		4.51	□□□□□ -1.69
CPSF4-208	ENST00000452047	PP632	Q6XCG6	107 aa		4.45	□□□□□ -1.7
CPSF4-208	ENST00000452047	MT1M	Q8N339	61 aa		4.44	□□□□□ -1.7
CPSF4-208	ENST00000452047	MT1L	Q93083	61 aa		4.44	□□□□□ -1.7
CPSF4-208	ENST00000452047	LCE3A	Q5TA76	89 aa		4.42	□□□□□ -1.7
CPSF4-208	ENST00000452047	C10orf95	Q9H7T3	257 aa		4.42	□□□□□ -1.7
CPSF4-208	ENST00000452047	TNP1	P09430	55 aa		4.39	□□□□□ -1.71
CPSF4-208	ENST00000452047	LCE1D	Q5T752	114 aa		4.38	□□□□□ -1.71
CPSF4-208	ENST00000452047	LCE4A	Q5TA78	99 aa		4.35	□□□□□ -1.71
CPSF4-208	ENST00000452047	KRTAP4-3	Q9BYR4	195 aa		4.34	□□□□□ -1.71
CPSF4-208	ENST00000452047	HMCN1	Q96RW7	5635 aa		4.32	□□□□□ -1.72
CPSF4-208	ENST00000452047	MT4	P47944	62 aa		4.32	□□□□□ -1.72
CPSF4-208	ENST00000452047	KRTAP5-4	Q6L8H1	288 aa		4.29	□□□□□ -1.72
CPSF4-208	ENST00000452047	KRTAP12-3	P60328	96 aa		4.24	□□□□□ -1.73
CPSF4-208	ENST00000452047	KRTAP15-1	Q3LI76	137 aa		4.24	□□□□□ -1.73
CPSF4-208	ENST00000452047	AHNAK2	Q8IVF2	5795 aa		4.23	□□□□□ -1.73
CPSF4-208	ENST00000452047	KRTAP5-10	Q6L8G5	202 aa		4.22	□□□□□ -1.73
CPSF4-208	ENST00000452047	KRTAP4-7	Q9BYR0	210 aa		4.22	□□□□□ -1.73
CPSF4-208	ENST00000452047	KRTAP23-1	A1A580	65 aa		4.21	□□□□□ -1.74
CPSF4-208	ENST00000452047	KRTAP4-6	Q9BYQ5	205 aa		4.2	□□□□□ -1.74
CPSF4-208	ENST00000452047		H3BS24	57 aa		4.14	□□□□□ -1.75
CPSF4-208	ENST00000452047	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.11	□□□□□ -1.75
CPSF4-208	ENST00000452047	KRTAP5-7	Q6L8G8	165 aa		4.08	□□□□□ -1.76
CPSF4-208	ENST00000452047	SPRR5	A0A1B0GTR4	108 aa		4.05	□□□□□ -1.76
CPSF4-208	ENST00000452047	KRTAP5-3	Q6L8H2	238 aa		4.05	□□□□□ -1.76
CPSF4-208	ENST00000452047	NDUFAF8	A1L188	74 aa		4.04	□□□□□ -1.76
CPSF4-208	ENST00000452047	KRTAP20-2	Q3LI61	65 aa		4.04	□□□□□ -1.76
CPSF4-208	ENST00000452047	KRTAP19-4	Q3LI73	84 aa		4.01	□□□□□ -1.77
CPSF4-208	ENST00000452047	LOC100996750	A0A140TA64	210 aa		4	□□□□□ -1.77
CPSF4-208	ENST00000452047	KRTAP12-4	P60329	112 aa		3.96	□□□□□ -1.78
CPSF4-208	ENST00000452047	LUZP6	Q538Z0	58 aa		3.94	□□□□□ -1.78
CPSF4-208	ENST00000452047	SYNE1	Q8NF91	8797 aa	Known RBP	3.93	□□□□□ -1.78
CPSF4-208	ENST00000452047	LCE3C	Q5T5A8	94 aa		3.9	□□□□□ -1.79
CPSF4-208	ENST00000452047	MT1A	P04731	61 aa		3.78	□□□□□ -1.8
CPSF4-208	ENST00000452047	KRTAP6-1	Q3LI64	71 aa		3.76	□□□□□ -1.81
CPSF4-208	ENST00000452047	KRTAP5-2	Q701N4	177 aa		3.76	□□□□□ -1.81
CPSF4-208	ENST00000452047		A0A0A0MQY5	61 aa		3.72	□□□□□ -1.81
CPSF4-208	ENST00000452047	KRTAP9-6	A8MVA2	160 aa		3.72	□□□□□ -1.81
CPSF4-208	ENST00000452047	KRTAP4-11	Q9BYQ6	195 aa		3.7	□□□□□ -1.82
CPSF4-208	ENST00000452047	KRTAP9-4	Q9BYQ2	154 aa		3.65	□□□□□ -1.83
CPSF4-208	ENST00000452047	KRTAP6-2	Q3LI66	62 aa		3.6	□□□□□ -1.83
CPSF4-208	ENST00000452047	KRTAP5-8	O75690	187 aa		3.59	□□□□□ -1.83
CPSF4-208	ENST00000452047	AHNAK	Q09666	5890 aa	Known RBP	3.59	□□□□□ -1.84
CPSF4-208	ENST00000452047	OBSCN	Q5VST9	7968 aa		3.54	□□□□□ -1.84
CPSF4-208	ENST00000452047	MUC5AC	P98088	5654 aa		3.54	□□□□□ -1.84
CPSF4-208	ENST00000452047	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.51	□□□□□ -1.85
CPSF4-208	ENST00000452047	INE1	O15225	51 aa		3.44	□□□□□ -1.86
CPSF4-208	ENST00000452047	MT3	P25713	68 aa		3.44	□□□□□ -1.86
CPSF4-208	ENST00000452047	KRTAP9-9	Q9BYP9	154 aa		3.42	□□□□□ -1.86
CPSF4-208	ENST00000452047	KRTAP5-1	Q6L8H4	278 aa		3.37	□□□□□ -1.87
CPSF4-208	ENST00000452047	LCE1E	Q5T753	118 aa		3.19	□□□□□ -1.9
CPSF4-208	ENST00000452047	KRTAP4-2	Q9BYR5	136 aa		3.04	□□□□□ -1.92
CPSF4-208	ENST00000452047	LCE1B	Q5T7P3	118 aa		2.98	□□□□□ -1.93
CPSF4-208	ENST00000452047	LCE1C	Q5T751	118 aa		2.97	□□□□□ -1.93
CPSF4-208	ENST00000452047	LCE3D	Q9BYE3	92 aa		2.79	□□□□□ -1.96
CPSF4-208	ENST00000452047	KRTAP4-12	Q9BQ66	201 aa		2.78	□□□□□ -1.96
CPSF4-208	ENST00000452047	KRTAP5-11	Q6L8G4	156 aa		2.71	□□□□□ -1.98
CPSF4-208	ENST00000452047	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.71	□□□□□ -1.98
CPSF4-208	ENST00000452047	LCE3E	Q5T5B0	92 aa		2.65	□□□□□ -1.99
CPSF4-208	ENST00000452047	LCE1F	Q5T754	118 aa		2.63	□□□□□ -1.99
CPSF4-208	ENST00000452047	PHGR1	C9JFL3	82 aa		2.52	□□□□□ -2.01
CPSF4-208	ENST00000452047	KRTAP21-2	Q3LI59	83 aa		2.49	□□□□□ -2.01
CPSF4-208	ENST00000452047	PRM1	P04553	51 aa		2.43	□□□□□ -2.02
CPSF4-208	ENST00000452047	KRTAP4-4	Q9BYR3	166 aa		2.27	□□□□□ -2.05
CPSF4-208	ENST00000452047	MUC19	Q7Z5P9	8384 aa		2.16	□□□□□ -2.06
CPSF4-208	ENST00000452047	KRTAP21-1	Q3LI58	79 aa		1.87	□□□□□ -2.11
CPSF4-208	ENST00000452047	MUC16	Q8WXI7	14507 aa		1.56	□□□□□ -2.16

Retrieved 78 of 20,778 RNA–protein pairs in 54.3 ms