RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 MT4P47944 62 aa7.19□□□□□ -1.26
SDC1-205ENST00000447124 PRR15LQ9BU68 103 aa7.14□□□□□ -1.27
SDC1-205ENST00000447124 LINC01558Q9Y6Z2 57 aa7.14□□□□□ -1.27
SDC1-205ENST00000447124 KRTAP5-4Q6L8H1 288 aa7.12□□□□□ -1.27
SDC1-205ENST00000447124 ATP5EP56381 51 aaPredicted RBP7.09□□□□□ -1.27
SDC1-205ENST00000447124 AHNAK2Q8IVF2 5795 aa7.08□□□□□ -1.28
SDC1-205ENST00000447124 KRTAP4-7Q9BYR0 210 aa7.08□□□□□ -1.28
SDC1-205ENST00000447124 KRTAP12-3P60328 96 aa7.03□□□□□ -1.28
SDC1-205ENST00000447124 KRTAP4-6Q9BYQ5 205 aa7.03□□□□□ -1.28
SDC1-205ENST00000447124 UQCR11O14957 56 aa6.95□□□□□ -1.3
SDC1-205ENST00000447124 TMEM258P61165 79 aa6.88□□□□□ -1.31
SDC1-205ENST00000447124 KRTAP5-10Q6L8G5 202 aa6.84□□□□□ -1.31
SDC1-205ENST00000447124 MIR22HGQ0VDD5 57 aa6.8□□□□□ -1.32
SDC1-205ENST00000447124 KRTAP25-1Q3LHN0 102 aa6.79□□□□□ -1.32
SDC1-205ENST00000447124 KRTAP5-5Q701N2 237 aaPredicted RBP6.79□□□□□ -1.32
SDC1-205ENST00000447124 KRTAP20-2Q3LI61 65 aa6.72□□□□□ -1.33
SDC1-205ENST00000447124 SYNE1Q8NF91 8797 aaKnown RBP6.7□□□□□ -1.34
SDC1-205ENST00000447124 LOC100996750A0A140TA64 210 aa6.7□□□□□ -1.34
SDC1-205ENST00000447124 KRTAP5-3Q6L8H2 238 aa6.67□□□□□ -1.34
SDC1-205ENST00000447124 SPRR5A0A1B0GTR4 108 aa6.65□□□□□ -1.34
SDC1-205ENST00000447124 K7ERS5 55 aa6.62□□□□□ -1.35
SDC1-205ENST00000447124 PSPHP1O15172 72 aa6.61□□□□□ -1.35
SDC1-205ENST00000447124 KRTAP12-4P60329 112 aa6.59□□□□□ -1.35
SDC1-205ENST00000447124 KRTAP19-4Q3LI73 84 aa6.58□□□□□ -1.36
SDC1-205ENST00000447124 KRTAP5-7Q6L8G8 165 aa6.58□□□□□ -1.36
SDC1-205ENST00000447124 KRTAP23-1A1A580 65 aa6.55□□□□□ -1.36
SDC1-205ENST00000447124 Q1T7F1 81 aa6.54□□□□□ -1.36
SDC1-205ENST00000447124 KRTAP15-1Q3LI76 137 aa6.54□□□□□ -1.36
SDC1-205ENST00000447124 V9GYY9 64 aa6.53□□□□□ -1.36
SDC1-205ENST00000447124 LCE3CQ5T5A8 94 aa6.48□□□□□ -1.37
SDC1-205ENST00000447124 A6NED7 52 aa6.32□□□□□ -1.4
SDC1-205ENST00000447124 KRTAP6-1Q3LI64 71 aa6.28□□□□□ -1.4
SDC1-205ENST00000447124 CDC42SE1Q9NRR8 79 aa6.28□□□□□ -1.4
SDC1-205ENST00000447124 MT1AP04731 61 aa6.27□□□□□ -1.41
SDC1-205ENST00000447124 KRTAP5-2Q701N4 177 aa6.22□□□□□ -1.41
SDC1-205ENST00000447124 ROMO1P60602 79 aa6.21□□□□□ -1.42
SDC1-205ENST00000447124 KRTAP9-6A8MVA2 160 aa6.18□□□□□ -1.42
SDC1-205ENST00000447124 KRTAP4-11Q9BYQ6 195 aa6.16□□□□□ -1.42
SDC1-205ENST00000447124 RPS28P62857 69 aaKnown RBP6.13□□□□□ -1.43
SDC1-205ENST00000447124 KRTAP9-4Q9BYQ2 154 aa6.1□□□□□ -1.43
SDC1-205ENST00000447124 KRTAP6-2Q3LI66 62 aa6□□□□□ -1.45
SDC1-205ENST00000447124 KRTAP5-8O75690 187 aa5.97□□□□□ -1.45
SDC1-205ENST00000447124 PCP4P48539 62 aa5.94□□□□□ -1.46
SDC1-205ENST00000447124 OBSCNQ5VST9 7968 aa5.92□□□□□ -1.46
SDC1-205ENST00000447124 AHNAKQ09666 5890 aaKnown RBP5.88□□□□□ -1.47
SDC1-205ENST00000447124 MUC5BQ9HC84 5762 aaPredicted RBP5.85□□□□□ -1.47
SDC1-205ENST00000447124 MUC5ACP98088 5654 aa5.76□□□□□ -1.49
SDC1-205ENST00000447124 MT3P25713 68 aa5.73□□□□□ -1.49
SDC1-205ENST00000447124 KRTAP9-9Q9BYP9 154 aa5.64□□□□□ -1.51
SDC1-205ENST00000447124 KRTAP5-1Q6L8H4 278 aa5.61□□□□□ -1.51
SDC1-205ENST00000447124 LCE1EQ5T753 118 aa5.29□□□□□ -1.56
SDC1-205ENST00000447124 BRK1Q8WUW1 75 aa5.28□□□□□ -1.56
SDC1-205ENST00000447124 KRTAP4-2Q9BYR5 136 aa5.05□□□□□ -1.6
SDC1-205ENST00000447124 LCE1BQ5T7P3 118 aa5.01□□□□□ -1.61
SDC1-205ENST00000447124 PMAIP1Q13794 54 aa4.96□□□□□ -1.62
SDC1-205ENST00000447124 LCE1CQ5T751 118 aa4.91□□□□□ -1.62
SDC1-205ENST00000447124 PRAC1Q96KF2 57 aa4.86□□□□□ -1.63
SDC1-205ENST00000447124 KRTAP4-12Q9BQ66 201 aa4.64□□□□□ -1.67
SDC1-205ENST00000447124 LCE3DQ9BYE3 92 aa4.63□□□□□ -1.67
SDC1-205ENST00000447124 PRO0628Q9UI54 55 aa4.62□□□□□ -1.67
SDC1-205ENST00000447124 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.46□□□□□ -1.7
SDC1-205ENST00000447124 KRTAP5-11Q6L8G4 156 aa4.45□□□□□ -1.7
SDC1-205ENST00000447124 KTN1-AS1Q86SY8 53 aa4.44□□□□□ -1.7
SDC1-205ENST00000447124 LCE1FQ5T754 118 aa4.35□□□□□ -1.71
SDC1-205ENST00000447124 LCE3EQ5T5B0 92 aa4.34□□□□□ -1.71
SDC1-205ENST00000447124 SVIPQ8NHG7 77 aa4.25□□□□□ -1.73
SDC1-205ENST00000447124 KRTAP21-2Q3LI59 83 aa4.14□□□□□ -1.75
SDC1-205ENST00000447124 LUZP6Q538Z0 58 aa4.07□□□□□ -1.76
SDC1-205ENST00000447124 PHGR1C9JFL3 82 aa3.96□□□□□ -1.78
SDC1-205ENST00000447124 KRTAP4-4Q9BYR3 166 aa3.83□□□□□ -1.8
SDC1-205ENST00000447124 MUC19Q7Z5P9 8384 aa3.67□□□□□ -1.82
SDC1-205ENST00000447124 NDUFAF8A1L188 74 aa3.22□□□□□ -1.89
SDC1-205ENST00000447124 PRM1P04553 51 aa3.18□□□□□ -1.9
SDC1-205ENST00000447124 KRTAP21-1Q3LI58 79 aa2.99□□□□□ -1.93
SDC1-205ENST00000447124 H3BS24 57 aa2.74□□□□□ -1.97
SDC1-205ENST00000447124 A0A0A0MQY5 61 aa2.69□□□□□ -1.98
SDC1-205ENST00000447124 INE1O15225 51 aa2.63□□□□□ -1.99
SDC1-205ENST00000447124 MUC16Q8WXI7 14507 aa2.63□□□□□ -1.99
Retrieved 78 of 20,778 RNA–protein pairs in 11.6 ms