RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 SPRR2EP22531 72 aa5.81□□□□□ -1.48
USP40-206ENST00000443711 SPRR2BP35325 72 aa5.81□□□□□ -1.48
USP40-206ENST00000443711 SPRR2AP35326 72 aa5.81□□□□□ -1.48
USP40-206ENST00000443711 LCE1AQ5T7P2 110 aa5.78□□□□□ -1.48
USP40-206ENST00000443711 PP632Q6XCG6 107 aa5.77□□□□□ -1.49
USP40-206ENST00000443711 KRTAP12-3P60328 96 aa5.75□□□□□ -1.49
USP40-206ENST00000443711 KRTAP2-3P0C7H8 128 aa5.69□□□□□ -1.5
USP40-206ENST00000443711 KRTAP9-9Q9BYP9 154 aa5.69□□□□□ -1.5
USP40-206ENST00000443711 KRTAP9-4Q9BYQ2 154 aa5.69□□□□□ -1.5
USP40-206ENST00000443711 KRTAP2-4Q9BYR9 128 aa5.69□□□□□ -1.5
USP40-206ENST00000443711 KRTAP19-3Q7Z4W3 81 aa5.68□□□□□ -1.5
USP40-206ENST00000443711 MT1LQ93083 61 aa5.64□□□□□ -1.51
USP40-206ENST00000443711 MT1GP13640 62 aa5.61□□□□□ -1.51
USP40-206ENST00000443711 SPRR2DP22532 72 aa5.61□□□□□ -1.51
USP40-206ENST00000443711 LCE5AQ5TCM9 118 aa5.61□□□□□ -1.51
USP40-206ENST00000443711 KRTAP15-1Q3LI76 137 aa5.55□□□□□ -1.52
USP40-206ENST00000443711 MT1MQ8N339 61 aa5.5□□□□□ -1.53
USP40-206ENST00000443711 KRTAP19-4Q3LI73 84 aa5.49□□□□□ -1.53
USP40-206ENST00000443711 KRTAP2-2Q9BYT5 123 aa5.49□□□□□ -1.53
USP40-206ENST00000443711 KRTAP2-1Q9BYU5 128 aa5.49□□□□□ -1.53
USP40-206ENST00000443711 PRAC1Q96KF2 57 aa5.47□□□□□ -1.53
USP40-206ENST00000443711 LCE1DQ5T752 114 aa5.46□□□□□ -1.54
USP40-206ENST00000443711 KTN1-AS1Q86SY8 53 aa5.43□□□□□ -1.54
USP40-206ENST00000443711 KRTAP4-7Q9BYR0 210 aa5.43□□□□□ -1.54
USP40-206ENST00000443711 LCE3CQ5T5A8 94 aa5.35□□□□□ -1.55
USP40-206ENST00000443711 KRTAP4-3Q9BYR4 195 aa5.35□□□□□ -1.55
USP40-206ENST00000443711 DSTQ03001 7570 aaKnown RBP5.33□□□□□ -1.56
USP40-206ENST00000443711 KRTAP4-9Q9BYQ8 210 aa5.3□□□□□ -1.56
USP40-206ENST00000443711 LCE4AQ5TA78 99 aa5.2□□□□□ -1.58
USP40-206ENST00000443711 KRTAP4-2Q9BYR5 136 aa5.19□□□□□ -1.58
USP40-206ENST00000443711 GPR98Q8WXG9 6306 aa5.16□□□□□ -1.58
USP40-206ENST00000443711 SVIPQ8NHG7 77 aa5.15□□□□□ -1.59
USP40-206ENST00000443711 KRTAP4-11Q9BYQ6 195 aa5.11□□□□□ -1.59
USP40-206ENST00000443711 KRTAP9-6A8MVA2 160 aa5□□□□□ -1.61
USP40-206ENST00000443711 H3BS24 57 aa4.98□□□□□ -1.61
USP40-206ENST00000443711 KRTAP5-5Q701N2 237 aaPredicted RBP4.98□□□□□ -1.61
USP40-206ENST00000443711 KRTAP5-4Q6L8H1 288 aa4.97□□□□□ -1.61
USP40-206ENST00000443711 SPRR5A0A1B0GTR4 108 aa4.91□□□□□ -1.62
USP40-206ENST00000443711 MT4P47944 62 aa4.86□□□□□ -1.63
USP40-206ENST00000443711 HMCN1Q96RW7 5635 aa4.84□□□□□ -1.63
USP40-206ENST00000443711 MT1AP04731 61 aa4.82□□□□□ -1.64
USP40-206ENST00000443711 KRTAP12-4P60329 112 aa4.78□□□□□ -1.64
USP40-206ENST00000443711 AHNAK2Q8IVF2 5795 aa4.77□□□□□ -1.65
USP40-206ENST00000443711 KRTAP6-1Q3LI64 71 aa4.74□□□□□ -1.65
USP40-206ENST00000443711 SYNE1Q8NF91 8797 aaKnown RBP4.69□□□□□ -1.66
USP40-206ENST00000443711 KRTAP20-2Q3LI61 65 aa4.66□□□□□ -1.66
USP40-206ENST00000443711 KRTAP5-3Q6L8H2 238 aa4.64□□□□□ -1.67
USP40-206ENST00000443711 LUZP6Q538Z0 58 aa4.58□□□□□ -1.68
USP40-206ENST00000443711 KRTAP5-10Q6L8G5 202 aa4.58□□□□□ -1.68
USP40-206ENST00000443711 KRTAP6-2Q3LI66 62 aa4.44□□□□□ -1.7
USP40-206ENST00000443711 KRTAP5-2Q701N4 177 aa4.43□□□□□ -1.7
USP40-206ENST00000443711 KRTAP5-7Q6L8G8 165 aa4.42□□□□□ -1.7
USP40-206ENST00000443711 MT3P25713 68 aa4.39□□□□□ -1.71
USP40-206ENST00000443711 NDUFAF8A1L188 74 aa4.13□□□□□ -1.75
USP40-206ENST00000443711 OBSCNQ5VST9 7968 aa4.07□□□□□ -1.76
USP40-206ENST00000443711 AHNAKQ09666 5890 aaKnown RBP4.02□□□□□ -1.77
USP40-206ENST00000443711 KRTAP5-8O75690 187 aa3.98□□□□□ -1.77
USP40-206ENST00000443711 LCE3DQ9BYE3 92 aa3.96□□□□□ -1.78
USP40-206ENST00000443711 MUC5BQ9HC84 5762 aaPredicted RBP3.95□□□□□ -1.78
USP40-206ENST00000443711 MUC5ACP98088 5654 aa3.93□□□□□ -1.78
USP40-206ENST00000443711 LCE1EQ5T753 118 aa3.91□□□□□ -1.78
USP40-206ENST00000443711 KRTAP5-1Q6L8H4 278 aa3.88□□□□□ -1.79
USP40-206ENST00000443711 LCE3EQ5T5B0 92 aa3.81□□□□□ -1.8
USP40-206ENST00000443711 LCE1BQ5T7P3 118 aa3.65□□□□□ -1.83
USP40-206ENST00000443711 LCE1CQ5T751 118 aa3.62□□□□□ -1.83
USP40-206ENST00000443711 A0A0A0MQY5 61 aa3.56□□□□□ -1.84
USP40-206ENST00000443711 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.5□□□□□ -1.85
USP40-206ENST00000443711 INE1O15225 51 aa3.43□□□□□ -1.86
USP40-206ENST00000443711 KRTAP5-11Q6L8G4 156 aa3.43□□□□□ -1.86
USP40-206ENST00000443711 PRM1P04553 51 aa3.11□□□□□ -1.91
USP40-206ENST00000443711 KRTAP21-2Q3LI59 83 aa3.11□□□□□ -1.91
USP40-206ENST00000443711 LCE1FQ5T754 118 aa3.05□□□□□ -1.92
USP40-206ENST00000443711 KRTAP4-4Q9BYR3 166 aa2.89□□□□□ -1.95
USP40-206ENST00000443711 PHGR1C9JFL3 82 aa2.78□□□□□ -1.96
USP40-206ENST00000443711 MUC19Q7Z5P9 8384 aa2.47□□□□□ -2.01
USP40-206ENST00000443711 KRTAP21-1Q3LI58 79 aa2.04□□□□□ -2.08
USP40-206ENST00000443711 MUC16Q8WXI7 14507 aa1.75□□□□□ -2.13
Retrieved 77 of 20,778 RNA–protein pairs in 68 ms