RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 SNURFQ9Y675 71 aa4.82□□□□□ -1.64
HMGN1-208ENST00000443046 SYNE1Q8NF91 8797 aaKnown RBP4.8□□□□□ -1.64
HMGN1-208ENST00000443046 SERP2Q8N6R1 65 aa4.79□□□□□ -1.64
HMGN1-208ENST00000443046 LCE3AQ5TA76 89 aa4.78□□□□□ -1.64
HMGN1-208ENST00000443046 SPINT4Q6UDR6 99 aa4.76□□□□□ -1.65
HMGN1-208ENST00000443046 KRTAP12-1P59990 96 aa4.75□□□□□ -1.65
HMGN1-208ENST00000443046 KRTAP23-1A1A580 65 aa4.74□□□□□ -1.65
HMGN1-208ENST00000443046 KRTAP12-4P60329 112 aa4.74□□□□□ -1.65
HMGN1-208ENST00000443046 SPATA8Q6RVD6 105 aa4.72□□□□□ -1.65
HMGN1-208ENST00000443046 AHNAKQ09666 5890 aaKnown RBP4.71□□□□□ -1.66
HMGN1-208ENST00000443046 SPANXA2-OT1Q8N9U9 137 aa4.7□□□□□ -1.66
HMGN1-208ENST00000443046 COX7CP15954 63 aa4.69□□□□□ -1.66
HMGN1-208ENST00000443046 MUC5BQ9HC84 5762 aaPredicted RBP4.65□□□□□ -1.67
HMGN1-208ENST00000443046 MUC5ACP98088 5654 aa4.63□□□□□ -1.67
HMGN1-208ENST00000443046 H7BZZ5 65 aa4.61□□□□□ -1.67
HMGN1-208ENST00000443046 TNP1P09430 55 aa4.61□□□□□ -1.67
HMGN1-208ENST00000443046 A0A1B0GU33 70 aa4.6□□□□□ -1.67
HMGN1-208ENST00000443046 SERP1Q9Y6X1 66 aa4.6□□□□□ -1.67
HMGN1-208ENST00000443046 KRTAP12-3P60328 96 aa4.59□□□□□ -1.67
HMGN1-208ENST00000443046 SEC61GP60059 68 aa4.58□□□□□ -1.68
HMGN1-208ENST00000443046 COA5Q86WW8 74 aa4.58□□□□□ -1.68
HMGN1-208ENST00000443046 ANAPC13Q9BS18 74 aa4.58□□□□□ -1.68
HMGN1-208ENST00000443046 CCDC179H3BU77 68 aa4.54□□□□□ -1.68
HMGN1-208ENST00000443046 KRTAP5-2Q701N4 177 aa4.51□□□□□ -1.69
HMGN1-208ENST00000443046 KRTAP5-8O75690 187 aa4.5□□□□□ -1.69
HMGN1-208ENST00000443046 SMIM26A0A096LP01 95 aa4.45□□□□□ -1.7
HMGN1-208ENST00000443046 A8MU10 97 aa4.45□□□□□ -1.7
HMGN1-208ENST00000443046 OBSCNQ5VST9 7968 aa4.42□□□□□ -1.7
HMGN1-208ENST00000443046 ATP5EP56381 51 aaPredicted RBP4.37□□□□□ -1.71
HMGN1-208ENST00000443046 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.37□□□□□ -1.71
HMGN1-208ENST00000443046 KRTAP15-1Q3LI76 137 aa4.36□□□□□ -1.71
HMGN1-208ENST00000443046 TMEM258P61165 79 aa4.33□□□□□ -1.72
HMGN1-208ENST00000443046 KRTAP6-1Q3LI64 71 aa4.32□□□□□ -1.72
HMGN1-208ENST00000443046 A0A1B0GU69 56 aa4.31□□□□□ -1.72
HMGN1-208ENST00000443046 MT1AP04731 61 aa4.3□□□□□ -1.72
HMGN1-208ENST00000443046 LINC01558Q9Y6Z2 57 aa4.24□□□□□ -1.73
HMGN1-208ENST00000443046 KRTAP6-2Q3LI66 62 aa4.21□□□□□ -1.74
HMGN1-208ENST00000443046 LCE3CQ5T5A8 94 aa4.2□□□□□ -1.74
HMGN1-208ENST00000443046 PRR15LQ9BU68 103 aa4.19□□□□□ -1.74
HMGN1-208ENST00000443046 SVIPQ8NHG7 77 aa4.16□□□□□ -1.74
HMGN1-208ENST00000443046 KRTAP25-1Q3LHN0 102 aa4.14□□□□□ -1.75
HMGN1-208ENST00000443046 KRTAP5-1Q6L8H4 278 aa4.13□□□□□ -1.75
HMGN1-208ENST00000443046 UQCR11O14957 56 aa4.08□□□□□ -1.76
HMGN1-208ENST00000443046 PCP4P48539 62 aa4.06□□□□□ -1.76
HMGN1-208ENST00000443046 Q1T7F1 81 aa4.05□□□□□ -1.76
HMGN1-208ENST00000443046 PSPHP1O15172 72 aa4.04□□□□□ -1.76
HMGN1-208ENST00000443046 KRTAP5-11Q6L8G4 156 aa4.03□□□□□ -1.76
HMGN1-208ENST00000443046 KRTAP9-6A8MVA2 160 aa4.02□□□□□ -1.77
HMGN1-208ENST00000443046 V9GYY9 64 aa4.02□□□□□ -1.77
HMGN1-208ENST00000443046 MIR22HGQ0VDD5 57 aa4.01□□□□□ -1.77
HMGN1-208ENST00000443046 MT3P25713 68 aa3.95□□□□□ -1.78
HMGN1-208ENST00000443046 RPS28P62857 69 aaKnown RBP3.94□□□□□ -1.78
HMGN1-208ENST00000443046 A6NED7 52 aa3.89□□□□□ -1.79
HMGN1-208ENST00000443046 K7ERS5 55 aa3.85□□□□□ -1.79
HMGN1-208ENST00000443046 A0A0A0MQY5 61 aa3.79□□□□□ -1.8
HMGN1-208ENST00000443046 LCE1EQ5T753 118 aa3.78□□□□□ -1.8
HMGN1-208ENST00000443046 CDC42SE1Q9NRR8 79 aa3.75□□□□□ -1.81
HMGN1-208ENST00000443046 ROMO1P60602 79 aa3.68□□□□□ -1.82
HMGN1-208ENST00000443046 KRTAP4-4Q9BYR3 166 aa3.67□□□□□ -1.82
HMGN1-208ENST00000443046 LCE1BQ5T7P3 118 aa3.53□□□□□ -1.84
HMGN1-208ENST00000443046 LCE1CQ5T751 118 aa3.51□□□□□ -1.85
HMGN1-208ENST00000443046 BRK1Q8WUW1 75 aa3.5□□□□□ -1.85
HMGN1-208ENST00000443046 PMAIP1Q13794 54 aa3.27□□□□□ -1.89
HMGN1-208ENST00000443046 LCE1FQ5T754 118 aa3.24□□□□□ -1.89
HMGN1-208ENST00000443046 PRAC1Q96KF2 57 aa3.19□□□□□ -1.9
HMGN1-208ENST00000443046 NDUFAF8A1L188 74 aa3.14□□□□□ -1.91
HMGN1-208ENST00000443046 PRO0628Q9UI54 55 aa3.14□□□□□ -1.91
HMGN1-208ENST00000443046 PHGR1C9JFL3 82 aa3.11□□□□□ -1.91
HMGN1-208ENST00000443046 KTN1-AS1Q86SY8 53 aa2.99□□□□□ -1.93
HMGN1-208ENST00000443046 LCE3DQ9BYE3 92 aa2.92□□□□□ -1.94
HMGN1-208ENST00000443046 KRTAP21-2Q3LI59 83 aa2.88□□□□□ -1.95
HMGN1-208ENST00000443046 MUC19Q7Z5P9 8384 aa2.75□□□□□ -1.97
HMGN1-208ENST00000443046 LCE3EQ5T5B0 92 aa2.66□□□□□ -1.98
HMGN1-208ENST00000443046 LUZP6Q538Z0 58 aa2.57□□□□□ -2
HMGN1-208ENST00000443046 KRTAP21-1Q3LI58 79 aa2.38□□□□□ -2.03
HMGN1-208ENST00000443046 PRM1P04553 51 aa1.91□□□□□ -2.1
HMGN1-208ENST00000443046 MUC16Q8WXI7 14507 aa1.91□□□□□ -2.1
HMGN1-208ENST00000443046 INE1O15225 51 aa1.77□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 93.5 ms