RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 LCE4AQ5TA78 99 aa2.32□□□□□ -2.04
VPS50-205ENST00000441602 LUZP6Q538Z0 58 aa2.31□□□□□ -2.04
VPS50-205ENST00000441602 USH2AO75445 5202 aa2.26□□□□□ -2.05
VPS50-205ENST00000441602 KRTAP19-5Q3LI72 72 aa2.26□□□□□ -2.05
VPS50-205ENST00000441602 SPRR5A0A1B0GTR4 108 aa2.21□□□□□ -2.06
VPS50-205ENST00000441602 NDUFAF8A1L188 74 aa2.21□□□□□ -2.06
VPS50-205ENST00000441602 CRCT1Q9UGL9 99 aa2.18□□□□□ -2.06
VPS50-205ENST00000441602 KRTAP19-7Q3SYF9 63 aa2.18□□□□□ -2.06
VPS50-205ENST00000441602 MT1EP04732 61 aa2.17□□□□□ -2.06
VPS50-205ENST00000441602 SSPOA2VEC9 5147 aa2.17□□□□□ -2.06
VPS50-205ENST00000441602 LCE3CQ5T5A8 94 aa2.16□□□□□ -2.06
VPS50-205ENST00000441602 KRTAP5-3Q6L8H2 238 aa2.16□□□□□ -2.06
VPS50-205ENST00000441602 MT1LQ93083 61 aa2.14□□□□□ -2.07
VPS50-205ENST00000441602 SPRR2FQ96RM1 72 aa2.11□□□□□ -2.07
VPS50-205ENST00000441602 MT1GP13640 62 aa2.1□□□□□ -2.07
VPS50-205ENST00000441602 KRTAP19-3Q7Z4W3 81 aa2.09□□□□□ -2.07
VPS50-205ENST00000441602 FCGBPQ9Y6R7 5405 aaPredicted RBP2.07□□□□□ -2.08
VPS50-205ENST00000441602 MT1MQ8N339 61 aa2.04□□□□□ -2.08
VPS50-205ENST00000441602 KRTAP5-9P26371 169 aa2.03□□□□□ -2.09
VPS50-205ENST00000441602 KRTAP6-3Q3LI67 103 aa2.01□□□□□ -2.09
VPS50-205ENST00000441602 SPRR2EP22531 72 aa2□□□□□ -2.09
VPS50-205ENST00000441602 SPRR2BP35325 72 aa2□□□□□ -2.09
VPS50-205ENST00000441602 SPRR2AP35326 72 aa2□□□□□ -2.09
VPS50-205ENST00000441602 FSIP2Q5CZC0 6907 aa1.99□□□□□ -2.09
VPS50-205ENST00000441602 LCE1AQ5T7P2 110 aa1.98□□□□□ -2.09
VPS50-205ENST00000441602 KMT2DO14686 5537 aa1.97□□□□□ -2.09
VPS50-205ENST00000441602 KRTAP9-6A8MVA2 160 aa1.96□□□□□ -2.1
VPS50-205ENST00000441602 KRTAP4-3Q9BYR4 195 aa1.94□□□□□ -2.1
VPS50-205ENST00000441602 SPRR2DP22532 72 aa1.93□□□□□ -2.1
VPS50-205ENST00000441602 MACF1Q9UPN3 7388 aaKnown RBP1.9□□□□□ -2.11
VPS50-205ENST00000441602 KRTAP2-3P0C7H8 128 aa1.89□□□□□ -2.11
VPS50-205ENST00000441602 KRTAP2-4Q9BYR9 128 aa1.89□□□□□ -2.11
VPS50-205ENST00000441602 KRTAP2-1Q9BYU5 128 aa1.89□□□□□ -2.11
VPS50-205ENST00000441602 INE1O15225 51 aa1.89□□□□□ -2.11
VPS50-205ENST00000441602 MUC12Q9UKN1 5478 aa1.85□□□□□ -2.11
VPS50-205ENST00000441602 MT1AP04731 61 aa1.85□□□□□ -2.11
VPS50-205ENST00000441602 SYNE2Q8WXH0 6885 aaKnown RBP1.8□□□□□ -2.12
VPS50-205ENST00000441602 KRTAP5-5Q701N2 237 aaPredicted RBP1.79□□□□□ -2.12
VPS50-205ENST00000441602 KRTAP6-1Q3LI64 71 aa1.77□□□□□ -2.13
VPS50-205ENST00000441602 MDN1Q9NU22 5596 aa1.76□□□□□ -2.13
VPS50-205ENST00000441602 KRTAP12-4P60329 112 aa1.76□□□□□ -2.13
VPS50-205ENST00000441602 NEBP20929 6669 aa1.75□□□□□ -2.13
VPS50-205ENST00000441602 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.75□□□□□ -2.13
VPS50-205ENST00000441602 KRTAP2-2Q9BYT5 123 aa1.73□□□□□ -2.13
VPS50-205ENST00000441602 KRTAP20-1Q3LI63 56 aa1.72□□□□□ -2.13
VPS50-205ENST00000441602 KRTAP5-4Q6L8H1 288 aa1.7□□□□□ -2.14
VPS50-205ENST00000441602 MT3P25713 68 aa1.7□□□□□ -2.14
VPS50-205ENST00000441602 SYNE1Q8NF91 8797 aaKnown RBP1.66□□□□□ -2.14
VPS50-205ENST00000441602 DSTQ03001 7570 aaKnown RBP1.66□□□□□ -2.14
VPS50-205ENST00000441602 LCE1EQ5T753 118 aa1.65□□□□□ -2.14
VPS50-205ENST00000441602 LCE3DQ9BYE3 92 aa1.65□□□□□ -2.14
VPS50-205ENST00000441602 MT4P47944 62 aa1.64□□□□□ -2.15
VPS50-205ENST00000441602 KRTAP6-2Q3LI66 62 aa1.64□□□□□ -2.15
VPS50-205ENST00000441602 LCE3EQ5T5B0 92 aa1.63□□□□□ -2.15
VPS50-205ENST00000441602 GPR98Q8WXG9 6306 aa1.62□□□□□ -2.15
VPS50-205ENST00000441602 HMCN1Q96RW7 5635 aa1.62□□□□□ -2.15
VPS50-205ENST00000441602 KRTAP20-2Q3LI61 65 aa1.6□□□□□ -2.15
VPS50-205ENST00000441602 KRTAP5-11Q6L8G4 156 aa1.6□□□□□ -2.15
VPS50-205ENST00000441602 KRTAP5-2Q701N4 177 aa1.55□□□□□ -2.16
VPS50-205ENST00000441602 MUC5BQ9HC84 5762 aaPredicted RBP1.49□□□□□ -2.17
VPS50-205ENST00000441602 OBSCNQ5VST9 7968 aa1.44□□□□□ -2.18
VPS50-205ENST00000441602 PRM1P04553 51 aa1.42□□□□□ -2.18
VPS50-205ENST00000441602 KRTAP5-1Q6L8H4 278 aa1.37□□□□□ -2.19
VPS50-205ENST00000441602 KRTAP5-7Q6L8G8 165 aa1.36□□□□□ -2.19
VPS50-205ENST00000441602 LCE1BQ5T7P3 118 aa1.36□□□□□ -2.19
VPS50-205ENST00000441602 KRTAP4-4Q9BYR3 166 aa1.34□□□□□ -2.2
VPS50-205ENST00000441602 LCE1CQ5T751 118 aa1.32□□□□□ -2.2
VPS50-205ENST00000441602 KRTAP5-8O75690 187 aa1.31□□□□□ -2.2
VPS50-205ENST00000441602 KRTAP5-10Q6L8G5 202 aa1.31□□□□□ -2.2
VPS50-205ENST00000441602 AHNAK2Q8IVF2 5795 aa1.31□□□□□ -2.2
VPS50-205ENST00000441602 AHNAKQ09666 5890 aaKnown RBP1.29□□□□□ -2.2
VPS50-205ENST00000441602 LCE1FQ5T754 118 aa1.26□□□□□ -2.21
VPS50-205ENST00000441602 MUC5ACP98088 5654 aa1.24□□□□□ -2.21
VPS50-205ENST00000441602 KRTAP21-2Q3LI59 83 aa1.14□□□□□ -2.23
VPS50-205ENST00000441602 MUC19Q7Z5P9 8384 aa1.01□□□□□ -2.25
VPS50-205ENST00000441602 PHGR1C9JFL3 82 aa0.98□□□□□ -2.25
VPS50-205ENST00000441602 KRTAP21-1Q3LI58 79 aa0.86□□□□□ -2.27
VPS50-205ENST00000441602 MUC16Q8WXI7 14507 aa0.63□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 113.7 ms