RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 ROMO1P60602 79 aa7.48□□□□□ -1.21
SHROOM1-204ENST00000440118 KRTAP19-7Q3SYF9 63 aa7.42□□□□□ -1.22
SHROOM1-204ENST00000440118 MT1EP04732 61 aa7.39□□□□□ -1.23
SHROOM1-204ENST00000440118 KRTAP19-3Q7Z4W3 81 aa7.35□□□□□ -1.23
SHROOM1-204ENST00000440118 LCE5AQ5TCM9 118 aa7.34□□□□□ -1.23
SHROOM1-204ENST00000440118 DSTQ03001 7570 aaKnown RBP7.3□□□□□ -1.24
SHROOM1-204ENST00000440118 KRTAP19-5Q3LI72 72 aa7.28□□□□□ -1.24
SHROOM1-204ENST00000440118 PRAC1Q96KF2 57 aa7.2□□□□□ -1.26
SHROOM1-204ENST00000440118 TNP1P09430 55 aa7.19□□□□□ -1.26
SHROOM1-204ENST00000440118 KRTAP25-1Q3LHN0 102 aa7.19□□□□□ -1.26
SHROOM1-204ENST00000440118 PP632Q6XCG6 107 aa7.19□□□□□ -1.26
SHROOM1-204ENST00000440118 MT1GP13640 62 aa7.17□□□□□ -1.26
SHROOM1-204ENST00000440118 C10orf95Q9H7T3 257 aa7.11□□□□□ -1.27
SHROOM1-204ENST00000440118 LCE3AQ5TA76 89 aa7.1□□□□□ -1.27
SHROOM1-204ENST00000440118 KRTAP4-9Q9BYQ8 210 aa7.1□□□□□ -1.27
SHROOM1-204ENST00000440118 GPR98Q8WXG9 6306 aa7.07□□□□□ -1.28
SHROOM1-204ENST00000440118 MT1MQ8N339 61 aa7.05□□□□□ -1.28
SHROOM1-204ENST00000440118 MT1LQ93083 61 aa7.05□□□□□ -1.28
SHROOM1-204ENST00000440118 KRTAP23-1A1A580 65 aa6.97□□□□□ -1.29
SHROOM1-204ENST00000440118 LCE1DQ5T752 114 aa6.89□□□□□ -1.31
SHROOM1-204ENST00000440118 LCE4AQ5TA78 99 aa6.88□□□□□ -1.31
SHROOM1-204ENST00000440118 MT4P47944 62 aa6.87□□□□□ -1.31
SHROOM1-204ENST00000440118 KRTAP4-3Q9BYR4 195 aa6.87□□□□□ -1.31
SHROOM1-204ENST00000440118 KRTAP12-3P60328 96 aa6.85□□□□□ -1.31
SHROOM1-204ENST00000440118 HMCN1Q96RW7 5635 aa6.82□□□□□ -1.32
SHROOM1-204ENST00000440118 KRTAP4-7Q9BYR0 210 aa6.7□□□□□ -1.34
SHROOM1-204ENST00000440118 AHNAK2Q8IVF2 5795 aa6.68□□□□□ -1.34
SHROOM1-204ENST00000440118 KRTAP5-4Q6L8H1 288 aa6.68□□□□□ -1.34
SHROOM1-204ENST00000440118 KRTAP4-6Q9BYQ5 205 aa6.59□□□□□ -1.35
SHROOM1-204ENST00000440118 KRTAP5-10Q6L8G5 202 aa6.52□□□□□ -1.37
SHROOM1-204ENST00000440118 KRTAP19-4Q3LI73 84 aa6.41□□□□□ -1.38
SHROOM1-204ENST00000440118 KRTAP5-5Q701N2 237 aaPredicted RBP6.41□□□□□ -1.38
SHROOM1-204ENST00000440118 KRTAP15-1Q3LI76 137 aa6.37□□□□□ -1.39
SHROOM1-204ENST00000440118 LOC100996750A0A140TA64 210 aa6.36□□□□□ -1.39
SHROOM1-204ENST00000440118 KRTAP12-4P60329 112 aa6.36□□□□□ -1.39
SHROOM1-204ENST00000440118 KRTAP20-2Q3LI61 65 aa6.36□□□□□ -1.39
SHROOM1-204ENST00000440118 SPRR5A0A1B0GTR4 108 aa6.31□□□□□ -1.4
SHROOM1-204ENST00000440118 KRTAP5-3Q6L8H2 238 aa6.3□□□□□ -1.4
SHROOM1-204ENST00000440118 LCE3CQ5T5A8 94 aa6.28□□□□□ -1.4
SHROOM1-204ENST00000440118 KRTAP5-7Q6L8G8 165 aa6.27□□□□□ -1.41
SHROOM1-204ENST00000440118 SYNE1Q8NF91 8797 aaKnown RBP6.26□□□□□ -1.41
SHROOM1-204ENST00000440118 LUZP6Q538Z0 58 aa6.23□□□□□ -1.41
SHROOM1-204ENST00000440118 MT1AP04731 61 aa6.01□□□□□ -1.45
SHROOM1-204ENST00000440118 KRTAP6-1Q3LI64 71 aa5.97□□□□□ -1.45
SHROOM1-204ENST00000440118 NDUFAF8A1L188 74 aa5.93□□□□□ -1.46
SHROOM1-204ENST00000440118 KRTAP9-6A8MVA2 160 aa5.86□□□□□ -1.47
SHROOM1-204ENST00000440118 KRTAP5-2Q701N4 177 aa5.85□□□□□ -1.47
SHROOM1-204ENST00000440118 KRTAP4-11Q9BYQ6 195 aa5.82□□□□□ -1.48
SHROOM1-204ENST00000440118 KRTAP9-4Q9BYQ2 154 aa5.8□□□□□ -1.48
SHROOM1-204ENST00000440118 KRTAP6-2Q3LI66 62 aa5.73□□□□□ -1.49
SHROOM1-204ENST00000440118 KRTAP5-8O75690 187 aa5.61□□□□□ -1.51
SHROOM1-204ENST00000440118 OBSCNQ5VST9 7968 aa5.58□□□□□ -1.52
SHROOM1-204ENST00000440118 A0A0A0MQY5 61 aa5.54□□□□□ -1.52
SHROOM1-204ENST00000440118 MT3P25713 68 aa5.52□□□□□ -1.53
SHROOM1-204ENST00000440118 MUC5BQ9HC84 5762 aaPredicted RBP5.51□□□□□ -1.53
SHROOM1-204ENST00000440118 AHNAKQ09666 5890 aaKnown RBP5.51□□□□□ -1.53
SHROOM1-204ENST00000440118 MUC5ACP98088 5654 aa5.48□□□□□ -1.53
SHROOM1-204ENST00000440118 H3BS24 57 aa5.48□□□□□ -1.53
SHROOM1-204ENST00000440118 KRTAP9-9Q9BYP9 154 aa5.39□□□□□ -1.55
SHROOM1-204ENST00000440118 KRTAP5-1Q6L8H4 278 aa5.25□□□□□ -1.57
SHROOM1-204ENST00000440118 INE1O15225 51 aa5.14□□□□□ -1.59
SHROOM1-204ENST00000440118 LCE1EQ5T753 118 aa5.03□□□□□ -1.6
SHROOM1-204ENST00000440118 LCE1BQ5T7P3 118 aa4.83□□□□□ -1.64
SHROOM1-204ENST00000440118 KRTAP4-2Q9BYR5 136 aa4.74□□□□□ -1.65
SHROOM1-204ENST00000440118 LCE1CQ5T751 118 aa4.67□□□□□ -1.66
SHROOM1-204ENST00000440118 LCE3DQ9BYE3 92 aa4.54□□□□□ -1.68
SHROOM1-204ENST00000440118 LCE3EQ5T5B0 92 aa4.41□□□□□ -1.7
SHROOM1-204ENST00000440118 KRTAP4-12Q9BQ66 201 aa4.37□□□□□ -1.71
SHROOM1-204ENST00000440118 KRTAP5-11Q6L8G4 156 aa4.24□□□□□ -1.73
SHROOM1-204ENST00000440118 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.22□□□□□ -1.73
SHROOM1-204ENST00000440118 LCE1FQ5T754 118 aa4.13□□□□□ -1.75
SHROOM1-204ENST00000440118 KRTAP21-2Q3LI59 83 aa3.9□□□□□ -1.79
SHROOM1-204ENST00000440118 PRM1P04553 51 aa3.81□□□□□ -1.8
SHROOM1-204ENST00000440118 PHGR1C9JFL3 82 aa3.79□□□□□ -1.8
SHROOM1-204ENST00000440118 KRTAP4-4Q9BYR3 166 aa3.64□□□□□ -1.83
SHROOM1-204ENST00000440118 MUC19Q7Z5P9 8384 aa3.46□□□□□ -1.86
SHROOM1-204ENST00000440118 KRTAP21-1Q3LI58 79 aa2.86□□□□□ -1.95
SHROOM1-204ENST00000440118 MUC16Q8WXI7 14507 aa2.41□□□□□ -2.02
Retrieved 78 of 20,778 RNA–protein pairs in 166.6 ms