RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 KRTAP5-9P26371 169 aa4.84□□□□□ -1.63
SCLT1-202ENST00000439369 MACF1Q9UPN3 7388 aaKnown RBP4.84□□□□□ -1.64
SCLT1-202ENST00000439369 LCE3AQ5TA76 89 aa4.81□□□□□ -1.64
SCLT1-202ENST00000439369 PP632Q6XCG6 107 aa4.78□□□□□ -1.64
SCLT1-202ENST00000439369 SPRR2FQ96RM1 72 aa4.75□□□□□ -1.65
SCLT1-202ENST00000439369 KMT2DO14686 5537 aa4.73□□□□□ -1.65
SCLT1-202ENST00000439369 KRTAP19-7Q3SYF9 63 aa4.73□□□□□ -1.65
SCLT1-202ENST00000439369 KRTAP19-5Q3LI72 72 aa4.71□□□□□ -1.66
SCLT1-202ENST00000439369 MT1EP04732 61 aa4.67□□□□□ -1.66
SCLT1-202ENST00000439369 SYNE2Q8WXH0 6885 aaKnown RBP4.66□□□□□ -1.66
SCLT1-202ENST00000439369 KRTAP12-3P60328 96 aa4.66□□□□□ -1.66
SCLT1-202ENST00000439369 A0A0A0MQY5 61 aa4.61□□□□□ -1.67
SCLT1-202ENST00000439369 LCE1AQ5T7P2 110 aa4.6□□□□□ -1.67
SCLT1-202ENST00000439369 KTN1-AS1Q86SY8 53 aa4.59□□□□□ -1.67
SCLT1-202ENST00000439369 SPRR2EP22531 72 aa4.58□□□□□ -1.68
SCLT1-202ENST00000439369 SPRR2BP35325 72 aa4.58□□□□□ -1.68
SCLT1-202ENST00000439369 SPRR2AP35326 72 aa4.58□□□□□ -1.68
SCLT1-202ENST00000439369 KRTAP15-1Q3LI76 137 aa4.57□□□□□ -1.68
SCLT1-202ENST00000439369 KRTAP19-3Q7Z4W3 81 aa4.55□□□□□ -1.68
SCLT1-202ENST00000439369 MT1LQ93083 61 aa4.54□□□□□ -1.68
SCLT1-202ENST00000439369 MT1GP13640 62 aa4.51□□□□□ -1.69
SCLT1-202ENST00000439369 PRAC1Q96KF2 57 aa4.51□□□□□ -1.69
SCLT1-202ENST00000439369 MUC12Q9UKN1 5478 aa4.49□□□□□ -1.69
SCLT1-202ENST00000439369 MDN1Q9NU22 5596 aa4.46□□□□□ -1.7
SCLT1-202ENST00000439369 SPRR2DP22532 72 aa4.43□□□□□ -1.7
SCLT1-202ENST00000439369 NEBP20929 6669 aa4.42□□□□□ -1.7
SCLT1-202ENST00000439369 MT1MQ8N339 61 aa4.41□□□□□ -1.7
SCLT1-202ENST00000439369 LCE3CQ5T5A8 94 aa4.34□□□□□ -1.71
SCLT1-202ENST00000439369 KRTAP2-3P0C7H8 128 aa4.32□□□□□ -1.72
SCLT1-202ENST00000439369 KRTAP2-4Q9BYR9 128 aa4.32□□□□□ -1.72
SCLT1-202ENST00000439369 KRTAP20-1Q3LI63 56 aa4.3□□□□□ -1.72
SCLT1-202ENST00000439369 KRTAP4-3Q9BYR4 195 aa4.23□□□□□ -1.73
SCLT1-202ENST00000439369 KRTAP2-2Q9BYT5 123 aa4.2□□□□□ -1.74
SCLT1-202ENST00000439369 KRTAP2-1Q9BYU5 128 aa4.2□□□□□ -1.74
SCLT1-202ENST00000439369 SPRR5A0A1B0GTR4 108 aa4.09□□□□□ -1.75
SCLT1-202ENST00000439369 KRTAP9-6A8MVA2 160 aa4.04□□□□□ -1.76
SCLT1-202ENST00000439369 DSTQ03001 7570 aaKnown RBP4.02□□□□□ -1.77
SCLT1-202ENST00000439369 KRTAP5-5Q701N2 237 aaPredicted RBP4.02□□□□□ -1.77
SCLT1-202ENST00000439369 KRTAP5-4Q6L8H1 288 aa3.99□□□□□ -1.77
SCLT1-202ENST00000439369 MT1AP04731 61 aa3.89□□□□□ -1.79
SCLT1-202ENST00000439369 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.89□□□□□ -1.79
SCLT1-202ENST00000439369 GPR98Q8WXG9 6306 aa3.84□□□□□ -1.79
SCLT1-202ENST00000439369 KRTAP12-4P60329 112 aa3.83□□□□□ -1.8
SCLT1-202ENST00000439369 LUZP6Q538Z0 58 aa3.82□□□□□ -1.8
SCLT1-202ENST00000439369 MT4P47944 62 aa3.81□□□□□ -1.8
SCLT1-202ENST00000439369 KRTAP6-1Q3LI64 71 aa3.79□□□□□ -1.8
SCLT1-202ENST00000439369 KRTAP5-11Q6L8G4 156 aa3.72□□□□□ -1.81
SCLT1-202ENST00000439369 KRTAP20-2Q3LI61 65 aa3.71□□□□□ -1.82
SCLT1-202ENST00000439369 HMCN1Q96RW7 5635 aa3.66□□□□□ -1.82
SCLT1-202ENST00000439369 SYNE1Q8NF91 8797 aaKnown RBP3.59□□□□□ -1.83
SCLT1-202ENST00000439369 KRTAP5-2Q701N4 177 aa3.57□□□□□ -1.84
SCLT1-202ENST00000439369 KRTAP6-2Q3LI66 62 aa3.55□□□□□ -1.84
SCLT1-202ENST00000439369 MT3P25713 68 aa3.54□□□□□ -1.84
SCLT1-202ENST00000439369 LCE1EQ5T753 118 aa3.47□□□□□ -1.85
SCLT1-202ENST00000439369 NDUFAF8A1L188 74 aa3.46□□□□□ -1.86
SCLT1-202ENST00000439369 AHNAK2Q8IVF2 5795 aa3.39□□□□□ -1.87
SCLT1-202ENST00000439369 LCE1FQ5T754 118 aa3.34□□□□□ -1.87
SCLT1-202ENST00000439369 KRTAP5-10Q6L8G5 202 aa3.34□□□□□ -1.87
SCLT1-202ENST00000439369 KRTAP5-1Q6L8H4 278 aa3.34□□□□□ -1.87
SCLT1-202ENST00000439369 KRTAP5-7Q6L8G8 165 aa3.26□□□□□ -1.89
SCLT1-202ENST00000439369 KRTAP4-4Q9BYR3 166 aa3.23□□□□□ -1.89
SCLT1-202ENST00000439369 LCE3DQ9BYE3 92 aa3.22□□□□□ -1.89
SCLT1-202ENST00000439369 KRTAP5-8O75690 187 aa3.16□□□□□ -1.9
SCLT1-202ENST00000439369 LCE3EQ5T5B0 92 aa3.1□□□□□ -1.91
SCLT1-202ENST00000439369 OBSCNQ5VST9 7968 aa3.07□□□□□ -1.92
SCLT1-202ENST00000439369 INE1O15225 51 aa2.94□□□□□ -1.94
SCLT1-202ENST00000439369 AHNAKQ09666 5890 aaKnown RBP2.93□□□□□ -1.94
SCLT1-202ENST00000439369 LCE1CQ5T751 118 aa2.93□□□□□ -1.94
SCLT1-202ENST00000439369 LCE1BQ5T7P3 118 aa2.93□□□□□ -1.94
SCLT1-202ENST00000439369 MUC5ACP98088 5654 aa2.89□□□□□ -1.95
SCLT1-202ENST00000439369 MUC5BQ9HC84 5762 aaPredicted RBP2.85□□□□□ -1.95
SCLT1-202ENST00000439369 PRM1P04553 51 aa2.54□□□□□ -2
SCLT1-202ENST00000439369 KRTAP21-2Q3LI59 83 aa2.51□□□□□ -2.01
SCLT1-202ENST00000439369 PHGR1C9JFL3 82 aa2.24□□□□□ -2.05
SCLT1-202ENST00000439369 MUC19Q7Z5P9 8384 aa1.96□□□□□ -2.1
SCLT1-202ENST00000439369 KRTAP21-1Q3LI58 79 aa1.53□□□□□ -2.16
SCLT1-202ENST00000439369 MUC16Q8WXI7 14507 aa1.38□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 55.6 ms