RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 KRTAP10-7P60409 375 aaPredicted RBP4.79□□□□□ -1.64
PTPRF-208ENST00000437607 KRTAP25-1Q3LHN0 102 aa4.79□□□□□ -1.64
PTPRF-208ENST00000437607 DSTQ03001 7570 aaKnown RBP4.77□□□□□ -1.65
PTPRF-208ENST00000437607 KRTAP10-12P60413 245 aa4.76□□□□□ -1.65
PTPRF-208ENST00000437607 LCE3AQ5TA76 89 aa4.63□□□□□ -1.67
PTPRF-208ENST00000437607 KTN1-AS1Q86SY8 53 aa4.6□□□□□ -1.67
PTPRF-208ENST00000437607 KRTAP23-1A1A580 65 aa4.59□□□□□ -1.67
PTPRF-208ENST00000437607 PP632Q6XCG6 107 aa4.59□□□□□ -1.67
PTPRF-208ENST00000437607 KRTAP4-9Q9BYQ8 210 aa4.57□□□□□ -1.68
PTPRF-208ENST00000437607 PRAC1Q96KF2 57 aa4.54□□□□□ -1.68
PTPRF-208ENST00000437607 LCE5AQ5TCM9 118 aa4.53□□□□□ -1.68
PTPRF-208ENST00000437607 KRTAP19-7Q3SYF9 63 aa4.5□□□□□ -1.69
PTPRF-208ENST00000437607 KRTAP19-5Q3LI72 72 aa4.48□□□□□ -1.69
PTPRF-208ENST00000437607 MT1EP04732 61 aa4.46□□□□□ -1.7
PTPRF-208ENST00000437607 KRTAP19-3Q7Z4W3 81 aa4.46□□□□□ -1.7
PTPRF-208ENST00000437607 HMCN1Q96RW7 5635 aa4.46□□□□□ -1.7
PTPRF-208ENST00000437607 KRTAP12-3P60328 96 aa4.45□□□□□ -1.7
PTPRF-208ENST00000437607 AHNAK2Q8IVF2 5795 aa4.43□□□□□ -1.7
PTPRF-208ENST00000437607 LCE1DQ5T752 114 aa4.43□□□□□ -1.7
PTPRF-208ENST00000437607 SVIPQ8NHG7 77 aa4.41□□□□□ -1.7
PTPRF-208ENST00000437607 MT4P47944 62 aa4.33□□□□□ -1.72
PTPRF-208ENST00000437607 LCE4AQ5TA78 99 aa4.32□□□□□ -1.72
PTPRF-208ENST00000437607 MT1GP13640 62 aa4.31□□□□□ -1.72
PTPRF-208ENST00000437607 KRTAP15-1Q3LI76 137 aa4.31□□□□□ -1.72
PTPRF-208ENST00000437607 MT1LQ93083 61 aa4.29□□□□□ -1.72
PTPRF-208ENST00000437607 MT1MQ8N339 61 aa4.27□□□□□ -1.73
PTPRF-208ENST00000437607 KRTAP5-10Q6L8G5 202 aa4.26□□□□□ -1.73
PTPRF-208ENST00000437607 KRTAP5-4Q6L8H1 288 aa4.24□□□□□ -1.73
PTPRF-208ENST00000437607 KRTAP4-6Q9BYQ5 205 aa4.21□□□□□ -1.74
PTPRF-208ENST00000437607 KRTAP4-3Q9BYR4 195 aa4.21□□□□□ -1.74
PTPRF-208ENST00000437607 KRTAP19-4Q3LI73 84 aa4.19□□□□□ -1.74
PTPRF-208ENST00000437607 LCE3CQ5T5A8 94 aa4.12□□□□□ -1.75
PTPRF-208ENST00000437607 KRTAP5-7Q6L8G8 165 aa4.12□□□□□ -1.75
PTPRF-208ENST00000437607 KRTAP5-3Q6L8H2 238 aa4.09□□□□□ -1.75
PTPRF-208ENST00000437607 KRTAP4-7Q9BYR0 210 aa4.08□□□□□ -1.76
PTPRF-208ENST00000437607 KRTAP20-2Q3LI61 65 aa4□□□□□ -1.77
PTPRF-208ENST00000437607 SYNE1Q8NF91 8797 aaKnown RBP3.95□□□□□ -1.78
PTPRF-208ENST00000437607 KRTAP5-5Q701N2 237 aaPredicted RBP3.95□□□□□ -1.78
PTPRF-208ENST00000437607 SPRR5A0A1B0GTR4 108 aa3.93□□□□□ -1.78
PTPRF-208ENST00000437607 KRTAP9-6A8MVA2 160 aa3.85□□□□□ -1.79
PTPRF-208ENST00000437607 LOC100996750A0A140TA64 210 aa3.84□□□□□ -1.79
PTPRF-208ENST00000437607 KRTAP12-4P60329 112 aa3.84□□□□□ -1.79
PTPRF-208ENST00000437607 LUZP6Q538Z0 58 aa3.8□□□□□ -1.8
PTPRF-208ENST00000437607 KRTAP4-11Q9BYQ6 195 aa3.71□□□□□ -1.82
PTPRF-208ENST00000437607 AHNAKQ09666 5890 aaKnown RBP3.7□□□□□ -1.82
PTPRF-208ENST00000437607 MT1AP04731 61 aa3.67□□□□□ -1.82
PTPRF-208ENST00000437607 KRTAP5-2Q701N4 177 aa3.67□□□□□ -1.82
PTPRF-208ENST00000437607 MUC5ACP98088 5654 aa3.64□□□□□ -1.83
PTPRF-208ENST00000437607 MUC5BQ9HC84 5762 aaPredicted RBP3.64□□□□□ -1.83
PTPRF-208ENST00000437607 OBSCNQ5VST9 7968 aa3.62□□□□□ -1.83
PTPRF-208ENST00000437607 KRTAP5-8O75690 187 aa3.61□□□□□ -1.83
PTPRF-208ENST00000437607 KRTAP6-1Q3LI64 71 aa3.6□□□□□ -1.83
PTPRF-208ENST00000437607 NDUFAF8A1L188 74 aa3.52□□□□□ -1.85
PTPRF-208ENST00000437607 KRTAP9-4Q9BYQ2 154 aa3.48□□□□□ -1.85
PTPRF-208ENST00000437607 KRTAP6-2Q3LI66 62 aa3.47□□□□□ -1.85
PTPRF-208ENST00000437607 KRTAP9-9Q9BYP9 154 aa3.42□□□□□ -1.86
PTPRF-208ENST00000437607 KRTAP5-1Q6L8H4 278 aa3.34□□□□□ -1.87
PTPRF-208ENST00000437607 MT3P25713 68 aa3.33□□□□□ -1.88
PTPRF-208ENST00000437607 A0A0A0MQY5 61 aa3.1□□□□□ -1.91
PTPRF-208ENST00000437607 LCE3DQ9BYE3 92 aa3.08□□□□□ -1.92
PTPRF-208ENST00000437607 LCE1EQ5T753 118 aa3.06□□□□□ -1.92
PTPRF-208ENST00000437607 LCE3EQ5T5B0 92 aa2.98□□□□□ -1.93
PTPRF-208ENST00000437607 KRTAP4-2Q9BYR5 136 aa2.96□□□□□ -1.94
PTPRF-208ENST00000437607 INE1O15225 51 aa2.92□□□□□ -1.94
PTPRF-208ENST00000437607 LCE1BQ5T7P3 118 aa2.9□□□□□ -1.95
PTPRF-208ENST00000437607 H3BS24 57 aa2.89□□□□□ -1.95
PTPRF-208ENST00000437607 LCE1CQ5T751 118 aa2.85□□□□□ -1.95
PTPRF-208ENST00000437607 KRTAP4-12Q9BQ66 201 aa2.77□□□□□ -1.97
PTPRF-208ENST00000437607 KRTAP5-11Q6L8G4 156 aa2.63□□□□□ -1.99
PTPRF-208ENST00000437607 LCE1FQ5T754 118 aa2.58□□□□□ -2
PTPRF-208ENST00000437607 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.57□□□□□ -2
PTPRF-208ENST00000437607 PRM1P04553 51 aa2.52□□□□□ -2.01
PTPRF-208ENST00000437607 PHGR1C9JFL3 82 aa2.47□□□□□ -2.01
PTPRF-208ENST00000437607 KRTAP21-2Q3LI59 83 aa2.38□□□□□ -2.03
PTPRF-208ENST00000437607 MUC19Q7Z5P9 8384 aa2.27□□□□□ -2.05
PTPRF-208ENST00000437607 KRTAP4-4Q9BYR3 166 aa2.22□□□□□ -2.05
PTPRF-208ENST00000437607 KRTAP21-1Q3LI58 79 aa1.86□□□□□ -2.11
PTPRF-208ENST00000437607 MUC16Q8WXI7 14507 aa1.52□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 5.7 ms