RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 MDN1Q9NU22 5596 aa3.44□□□□□ -1.86
CUX1-206ENST00000437600 KRTAP19-7Q3SYF9 63 aa3.41□□□□□ -1.86
CUX1-206ENST00000437600 LCE3CQ5T5A8 94 aa3.41□□□□□ -1.86
CUX1-206ENST00000437600 KRTAP9-6A8MVA2 160 aa3.38□□□□□ -1.87
CUX1-206ENST00000437600 LOC100996750A0A140TA64 210 aa3.35□□□□□ -1.87
CUX1-206ENST00000437600 KRTAP4-6Q9BYQ5 205 aa3.35□□□□□ -1.87
CUX1-206ENST00000437600 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.34□□□□□ -1.88
CUX1-206ENST00000437600 SPRR2FQ96RM1 72 aa3.33□□□□□ -1.88
CUX1-206ENST00000437600 MT1EP04732 61 aa3.32□□□□□ -1.88
CUX1-206ENST00000437600 KRTAP4-3Q9BYR4 195 aa3.28□□□□□ -1.88
CUX1-206ENST00000437600 MT1LQ93083 61 aa3.27□□□□□ -1.89
CUX1-206ENST00000437600 SYNE1Q8NF91 8797 aaKnown RBP3.19□□□□□ -1.9
CUX1-206ENST00000437600 KRTAP9-7A8MTY7 169 aa3.19□□□□□ -1.9
CUX1-206ENST00000437600 KRTAP5-9P26371 169 aa3.18□□□□□ -1.9
CUX1-206ENST00000437600 MT1GP13640 62 aa3.17□□□□□ -1.9
CUX1-206ENST00000437600 KRTAP19-3Q7Z4W3 81 aa3.15□□□□□ -1.91
CUX1-206ENST00000437600 SPRR2EP22531 72 aa3.14□□□□□ -1.91
CUX1-206ENST00000437600 SPRR2BP35325 72 aa3.14□□□□□ -1.91
CUX1-206ENST00000437600 SPRR2AP35326 72 aa3.14□□□□□ -1.91
CUX1-206ENST00000437600 KRTAP6-3Q3LI67 103 aa3.14□□□□□ -1.91
CUX1-206ENST00000437600 LCE1AQ5T7P2 110 aa3.14□□□□□ -1.91
CUX1-206ENST00000437600 OBSCNQ5VST9 7968 aa3.13□□□□□ -1.91
CUX1-206ENST00000437600 MT1MQ8N339 61 aa3.12□□□□□ -1.91
CUX1-206ENST00000437600 LCE5AQ5TCM9 118 aa3.09□□□□□ -1.91
CUX1-206ENST00000437600 KRTAP2-3P0C7H8 128 aa3.09□□□□□ -1.91
CUX1-206ENST00000437600 KRTAP2-4Q9BYR9 128 aa3.09□□□□□ -1.91
CUX1-206ENST00000437600 KRTAP2-1Q9BYU5 128 aa3.09□□□□□ -1.91
CUX1-206ENST00000437600 NEBP20929 6669 aa3.05□□□□□ -1.92
CUX1-206ENST00000437600 SPRR2DP22532 72 aa3.01□□□□□ -1.93
CUX1-206ENST00000437600 KRTAP19-4Q3LI73 84 aa2.99□□□□□ -1.93
CUX1-206ENST00000437600 KRTAP2-2Q9BYT5 123 aa2.99□□□□□ -1.93
CUX1-206ENST00000437600 LCE4AQ5TA78 99 aa2.96□□□□□ -1.94
CUX1-206ENST00000437600 KRTAP4-9Q9BYQ8 210 aa2.92□□□□□ -1.94
CUX1-206ENST00000437600 LCE3BQ5TA77 95 aa2.91□□□□□ -1.94
CUX1-206ENST00000437600 KRTAP12-4P60329 112 aa2.87□□□□□ -1.95
CUX1-206ENST00000437600 KRTAP6-1Q3LI64 71 aa2.84□□□□□ -1.96
CUX1-206ENST00000437600 KRTAP9-9Q9BYP9 154 aa2.79□□□□□ -1.96
CUX1-206ENST00000437600 KRTAP9-4Q9BYQ2 154 aa2.79□□□□□ -1.96
CUX1-206ENST00000437600 KRTAP4-12Q9BQ66 201 aa2.79□□□□□ -1.96
CUX1-206ENST00000437600 KRTAP20-1Q3LI63 56 aa2.78□□□□□ -1.96
CUX1-206ENST00000437600 LCE1EQ5T753 118 aa2.78□□□□□ -1.96
CUX1-206ENST00000437600 KRTAP5-5Q701N2 237 aaPredicted RBP2.76□□□□□ -1.97
CUX1-206ENST00000437600 MT1AP04731 61 aa2.73□□□□□ -1.97
CUX1-206ENST00000437600 MT4P47944 62 aa2.71□□□□□ -1.98
CUX1-206ENST00000437600 HMCN1Q96RW7 5635 aa2.7□□□□□ -1.98
CUX1-206ENST00000437600 KRTAP5-3Q6L8H2 238 aa2.67□□□□□ -1.98
CUX1-206ENST00000437600 LCE1DQ5T752 114 aa2.66□□□□□ -1.98
CUX1-206ENST00000437600 LCE3DQ9BYE3 92 aa2.64□□□□□ -1.99
CUX1-206ENST00000437600 KRTAP5-4Q6L8H1 288 aa2.63□□□□□ -1.99
CUX1-206ENST00000437600 PRM1P04553 51 aa2.59□□□□□ -2
CUX1-206ENST00000437600 LCE1FQ5T754 118 aa2.58□□□□□ -2
CUX1-206ENST00000437600 KRTAP6-2Q3LI66 62 aa2.58□□□□□ -2
CUX1-206ENST00000437600 LCE3EQ5T5B0 92 aa2.57□□□□□ -2
CUX1-206ENST00000437600 KRTAP20-2Q3LI61 65 aa2.52□□□□□ -2.01
CUX1-206ENST00000437600 KRTAP4-2Q9BYR5 136 aa2.5□□□□□ -2.01
CUX1-206ENST00000437600 MT3P25713 68 aa2.47□□□□□ -2.01
CUX1-206ENST00000437600 KRTAP4-11Q9BYQ6 195 aa2.43□□□□□ -2.02
CUX1-206ENST00000437600 MUC19Q7Z5P9 8384 aa2.38□□□□□ -2.03
CUX1-206ENST00000437600 KRTAP5-2Q701N4 177 aa2.37□□□□□ -2.03
CUX1-206ENST00000437600 AHNAK2Q8IVF2 5795 aa2.35□□□□□ -2.03
CUX1-206ENST00000437600 MUC5ACP98088 5654 aa2.18□□□□□ -2.06
CUX1-206ENST00000437600 KRTAP5-10Q6L8G5 202 aa2.17□□□□□ -2.06
CUX1-206ENST00000437600 GPR98Q8WXG9 6306 aa2.16□□□□□ -2.06
CUX1-206ENST00000437600 LCE1BQ5T7P3 118 aa2.14□□□□□ -2.07
CUX1-206ENST00000437600 KRTAP5-8O75690 187 aa2.12□□□□□ -2.07
CUX1-206ENST00000437600 KRTAP5-1Q6L8H4 278 aa2.11□□□□□ -2.07
CUX1-206ENST00000437600 KRTAP5-7Q6L8G8 165 aa2.09□□□□□ -2.07
CUX1-206ENST00000437600 MUC5BQ9HC84 5762 aaPredicted RBP2.06□□□□□ -2.08
CUX1-206ENST00000437600 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.98□□□□□ -2.09
CUX1-206ENST00000437600 LCE1CQ5T751 118 aa1.94□□□□□ -2.1
CUX1-206ENST00000437600 KRTAP4-4Q9BYR3 166 aa1.83□□□□□ -2.12
CUX1-206ENST00000437600 KRTAP21-2Q3LI59 83 aa1.8□□□□□ -2.12
CUX1-206ENST00000437600 AHNAKQ09666 5890 aaKnown RBP1.75□□□□□ -2.13
CUX1-206ENST00000437600 KRTAP5-11Q6L8G4 156 aa1.72□□□□□ -2.13
CUX1-206ENST00000437600 KRTAP21-1Q3LI58 79 aa1.65□□□□□ -2.14
CUX1-206ENST00000437600 PHGR1C9JFL3 82 aa1.5□□□□□ -2.17
CUX1-206ENST00000437600 MUC16Q8WXI7 14507 aa0.95□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 11.6 ms