RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 MUC12Q9UKN1 5478 aa4.86□□□□□ -1.63
USP40-205ENST00000430158 MIR22HGQ0VDD5 57 aa4.84□□□□□ -1.63
USP40-205ENST00000430158 KRTAP8-1Q8IUC2 63 aa4.84□□□□□ -1.63
USP40-205ENST00000430158 A0A0A0MQY5 61 aa4.83□□□□□ -1.64
USP40-205ENST00000430158 C10orf95Q9H7T3 257 aa4.82□□□□□ -1.64
USP40-205ENST00000430158 KRTAP5-1Q6L8H4 278 aa4.8□□□□□ -1.64
USP40-205ENST00000430158 SPRR2FQ96RM1 72 aa4.78□□□□□ -1.64
USP40-205ENST00000430158 MDN1Q9NU22 5596 aa4.78□□□□□ -1.64
USP40-205ENST00000430158 A6NED7 52 aa4.7□□□□□ -1.66
USP40-205ENST00000430158 KRTAP19-7Q3SYF9 63 aa4.69□□□□□ -1.66
USP40-205ENST00000430158 KRTAP5-4Q6L8H1 288 aa4.67□□□□□ -1.66
USP40-205ENST00000430158 TNP1P09430 55 aa4.66□□□□□ -1.66
USP40-205ENST00000430158 SPRR2EP22531 72 aa4.65□□□□□ -1.67
USP40-205ENST00000430158 SPRR2BP35325 72 aa4.65□□□□□ -1.67
USP40-205ENST00000430158 SPRR2AP35326 72 aa4.65□□□□□ -1.67
USP40-205ENST00000430158 KRTAP4-4Q9BYR3 166 aa4.64□□□□□ -1.67
USP40-205ENST00000430158 MT1EP04732 61 aa4.62□□□□□ -1.67
USP40-205ENST00000430158 K7ERS5 55 aa4.61□□□□□ -1.67
USP40-205ENST00000430158 LCE3AQ5TA76 89 aa4.61□□□□□ -1.67
USP40-205ENST00000430158 KRTAP19-5Q3LI72 72 aa4.6□□□□□ -1.67
USP40-205ENST00000430158 CDC42SE1Q9NRR8 79 aa4.6□□□□□ -1.67
USP40-205ENST00000430158 KRTAP25-1Q3LHN0 102 aa4.55□□□□□ -1.68
USP40-205ENST00000430158 KRTAP20-1Q3LI63 56 aa4.5□□□□□ -1.69
USP40-205ENST00000430158 KRTAP19-3Q7Z4W3 81 aa4.5□□□□□ -1.69
USP40-205ENST00000430158 SPRR2DP22532 72 aa4.49□□□□□ -1.69
USP40-205ENST00000430158 KRTAP2-3P0C7H8 128 aa4.48□□□□□ -1.69
USP40-205ENST00000430158 KRTAP2-4Q9BYR9 128 aa4.48□□□□□ -1.69
USP40-205ENST00000430158 MT1LQ93083 61 aa4.45□□□□□ -1.7
USP40-205ENST00000430158 KRTAP12-3P60328 96 aa4.43□□□□□ -1.7
USP40-205ENST00000430158 ROMO1P60602 79 aa4.43□□□□□ -1.7
USP40-205ENST00000430158 MT1GP13640 62 aa4.42□□□□□ -1.7
USP40-205ENST00000430158 MT1MQ8N339 61 aa4.37□□□□□ -1.71
USP40-205ENST00000430158 KRTAP2-1Q9BYU5 128 aa4.35□□□□□ -1.71
USP40-205ENST00000430158 KRTAP9-6A8MVA2 160 aa4.33□□□□□ -1.72
USP40-205ENST00000430158 PP632Q6XCG6 107 aa4.31□□□□□ -1.72
USP40-205ENST00000430158 BRK1Q8WUW1 75 aa4.31□□□□□ -1.72
USP40-205ENST00000430158 DSTQ03001 7570 aaKnown RBP4.27□□□□□ -1.73
USP40-205ENST00000430158 MT3P25713 68 aa4.27□□□□□ -1.73
USP40-205ENST00000430158 KRTAP4-3Q9BYR4 195 aa4.27□□□□□ -1.73
USP40-205ENST00000430158 OBSCNQ5VST9 7968 aa4.17□□□□□ -1.74
USP40-205ENST00000430158 LCE3CQ5T5A8 94 aa4.12□□□□□ -1.75
USP40-205ENST00000430158 PMAIP1Q13794 54 aa4.07□□□□□ -1.76
USP40-205ENST00000430158 PRAC1Q96KF2 57 aa4.04□□□□□ -1.76
USP40-205ENST00000430158 KRTAP5-5Q701N2 237 aaPredicted RBP4.02□□□□□ -1.77
USP40-205ENST00000430158 PRO0628Q9UI54 55 aa4.02□□□□□ -1.77
USP40-205ENST00000430158 KRTAP5-2Q701N4 177 aa3.95□□□□□ -1.78
USP40-205ENST00000430158 HMCN1Q96RW7 5635 aa3.94□□□□□ -1.78
USP40-205ENST00000430158 LCE1FQ5T754 118 aa3.92□□□□□ -1.78
USP40-205ENST00000430158 GPR98Q8WXG9 6306 aa3.92□□□□□ -1.78
USP40-205ENST00000430158 MT4P47944 62 aa3.9□□□□□ -1.79
USP40-205ENST00000430158 SYNE1Q8NF91 8797 aaKnown RBP3.8□□□□□ -1.8
USP40-205ENST00000430158 MT1AP04731 61 aa3.79□□□□□ -1.8
USP40-205ENST00000430158 SPRR5A0A1B0GTR4 108 aa3.78□□□□□ -1.8
USP40-205ENST00000430158 KRTAP20-2Q3LI61 65 aa3.77□□□□□ -1.81
USP40-205ENST00000430158 KTN1-AS1Q86SY8 53 aa3.77□□□□□ -1.81
USP40-205ENST00000430158 KRTAP6-1Q3LI64 71 aa3.76□□□□□ -1.81
USP40-205ENST00000430158 KRTAP12-4P60329 112 aa3.75□□□□□ -1.81
USP40-205ENST00000430158 AHNAK2Q8IVF2 5795 aa3.74□□□□□ -1.81
USP40-205ENST00000430158 NDUFAF8A1L188 74 aa3.68□□□□□ -1.82
USP40-205ENST00000430158 KRTAP5-10Q6L8G5 202 aa3.57□□□□□ -1.84
USP40-205ENST00000430158 KRTAP6-2Q3LI66 62 aa3.52□□□□□ -1.85
USP40-205ENST00000430158 LCE3EQ5T5B0 92 aa3.39□□□□□ -1.87
USP40-205ENST00000430158 KRTAP5-7Q6L8G8 165 aa3.39□□□□□ -1.87
USP40-205ENST00000430158 KRTAP5-8O75690 187 aa3.29□□□□□ -1.88
USP40-205ENST00000430158 LCE1CQ5T751 118 aa3.21□□□□□ -1.9
USP40-205ENST00000430158 LCE1BQ5T7P3 118 aa3.21□□□□□ -1.9
USP40-205ENST00000430158 LUZP6Q538Z0 58 aa3.16□□□□□ -1.9
USP40-205ENST00000430158 MUC5ACP98088 5654 aa3.14□□□□□ -1.91
USP40-205ENST00000430158 MUC5BQ9HC84 5762 aaPredicted RBP3.04□□□□□ -1.92
USP40-205ENST00000430158 AHNAKQ09666 5890 aaKnown RBP3.01□□□□□ -1.93
USP40-205ENST00000430158 LCE3DQ9BYE3 92 aa2.99□□□□□ -1.93
USP40-205ENST00000430158 MUC19Q7Z5P9 8384 aa2.78□□□□□ -1.96
USP40-205ENST00000430158 KRTAP21-2Q3LI59 83 aa2.5□□□□□ -2.01
USP40-205ENST00000430158 INE1O15225 51 aa2.3□□□□□ -2.04
USP40-205ENST00000430158 PRM1P04553 51 aa2.28□□□□□ -2.04
USP40-205ENST00000430158 PHGR1C9JFL3 82 aa2.24□□□□□ -2.05
USP40-205ENST00000430158 KRTAP21-1Q3LI58 79 aa1.53□□□□□ -2.16
USP40-205ENST00000430158 MUC16Q8WXI7 14507 aa1.43□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 79.1 ms