RNA–Protein interactions for RNA: ENST00000428776.1

HMGB3P4-201, Transcript of high mobility group box 3 pseudogene 4, humanhuman

BASIC

Gene HMGB3P4, Length 514 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P4-201ENST00000428776 KRTAP5-9P26371 169 aa4.62□□□□□ -1.67
HMGB3P4-201ENST00000428776 SPRR2FQ96RM1 72 aa4.62□□□□□ -1.67
HMGB3P4-201ENST00000428776 KRTAP6-3Q3LI67 103 aa4.59□□□□□ -1.67
HMGB3P4-201ENST00000428776 SYNE2Q8WXH0 6885 aaKnown RBP4.57□□□□□ -1.68
HMGB3P4-201ENST00000428776 MT1LQ93083 61 aa4.54□□□□□ -1.68
HMGB3P4-201ENST00000428776 KRTAP19-4Q3LI73 84 aa4.53□□□□□ -1.68
HMGB3P4-201ENST00000428776 KRTAP19-3Q7Z4W3 81 aa4.48□□□□□ -1.69
HMGB3P4-201ENST00000428776 MT1GP13640 62 aa4.46□□□□□ -1.7
HMGB3P4-201ENST00000428776 KRTAP4-7Q9BYR0 210 aa4.46□□□□□ -1.7
HMGB3P4-201ENST00000428776 LCE3CQ5T5A8 94 aa4.44□□□□□ -1.7
HMGB3P4-201ENST00000428776 LCE1DQ5T752 114 aa4.44□□□□□ -1.7
HMGB3P4-201ENST00000428776 MUC12Q9UKN1 5478 aa4.44□□□□□ -1.7
HMGB3P4-201ENST00000428776 LCE1AQ5T7P2 110 aa4.43□□□□□ -1.7
HMGB3P4-201ENST00000428776 LCE5AQ5TCM9 118 aa4.42□□□□□ -1.7
HMGB3P4-201ENST00000428776 SPRR2EP22531 72 aa4.41□□□□□ -1.7
HMGB3P4-201ENST00000428776 SPRR2BP35325 72 aa4.41□□□□□ -1.7
HMGB3P4-201ENST00000428776 SPRR2AP35326 72 aa4.41□□□□□ -1.7
HMGB3P4-201ENST00000428776 MT1MQ8N339 61 aa4.38□□□□□ -1.71
HMGB3P4-201ENST00000428776 KRTAP4-9Q9BYQ8 210 aa4.35□□□□□ -1.71
HMGB3P4-201ENST00000428776 SPRR5A0A1B0GTR4 108 aa4.34□□□□□ -1.71
HMGB3P4-201ENST00000428776 NEBP20929 6669 aa4.34□□□□□ -1.72
HMGB3P4-201ENST00000428776 KRTAP4-2Q9BYR5 136 aa4.29□□□□□ -1.72
HMGB3P4-201ENST00000428776 MDN1Q9NU22 5596 aa4.28□□□□□ -1.72
HMGB3P4-201ENST00000428776 SPRR2DP22532 72 aa4.26□□□□□ -1.73
HMGB3P4-201ENST00000428776 KRTAP4-3Q9BYR4 195 aa4.26□□□□□ -1.73
HMGB3P4-201ENST00000428776 LCE4AQ5TA78 99 aa4.22□□□□□ -1.73
HMGB3P4-201ENST00000428776 KRTAP4-11Q9BYQ6 195 aa4.17□□□□□ -1.74
HMGB3P4-201ENST00000428776 KRTAP9-6A8MVA2 160 aa4.16□□□□□ -1.74
HMGB3P4-201ENST00000428776 LUZP6Q538Z0 58 aa4.15□□□□□ -1.75
HMGB3P4-201ENST00000428776 KRTAP20-1Q3LI63 56 aa4.14□□□□□ -1.75
HMGB3P4-201ENST00000428776 H3BS24 57 aa4.07□□□□□ -1.76
HMGB3P4-201ENST00000428776 DSTQ03001 7570 aaKnown RBP4.06□□□□□ -1.76
HMGB3P4-201ENST00000428776 KRTAP2-3P0C7H8 128 aa4.04□□□□□ -1.76
HMGB3P4-201ENST00000428776 KRTAP2-4Q9BYR9 128 aa4.04□□□□□ -1.76
HMGB3P4-201ENST00000428776 KRTAP5-5Q701N2 237 aaPredicted RBP3.96□□□□□ -1.78
HMGB3P4-201ENST00000428776 NDUFAF8A1L188 74 aa3.94□□□□□ -1.78
HMGB3P4-201ENST00000428776 KRTAP2-2Q9BYT5 123 aa3.94□□□□□ -1.78
HMGB3P4-201ENST00000428776 KRTAP2-1Q9BYU5 128 aa3.94□□□□□ -1.78
HMGB3P4-201ENST00000428776 A0A0A0MQY5 61 aa3.92□□□□□ -1.78
HMGB3P4-201ENST00000428776 KRTAP5-3Q6L8H2 238 aa3.9□□□□□ -1.79
HMGB3P4-201ENST00000428776 MT1AP04731 61 aa3.87□□□□□ -1.79
HMGB3P4-201ENST00000428776 KRTAP5-4Q6L8H1 288 aa3.84□□□□□ -1.79
HMGB3P4-201ENST00000428776 KRTAP6-1Q3LI64 71 aa3.81□□□□□ -1.8
HMGB3P4-201ENST00000428776 KRTAP12-4P60329 112 aa3.72□□□□□ -1.81
HMGB3P4-201ENST00000428776 MT4P47944 62 aa3.67□□□□□ -1.82
HMGB3P4-201ENST00000428776 GPR98Q8WXG9 6306 aa3.6□□□□□ -1.83
HMGB3P4-201ENST00000428776 SYNE1Q8NF91 8797 aaKnown RBP3.6□□□□□ -1.83
HMGB3P4-201ENST00000428776 KRTAP20-2Q3LI61 65 aa3.58□□□□□ -1.84
HMGB3P4-201ENST00000428776 KRTAP6-2Q3LI66 62 aa3.53□□□□□ -1.84
HMGB3P4-201ENST00000428776 HMCN1Q96RW7 5635 aa3.52□□□□□ -1.85
HMGB3P4-201ENST00000428776 MT3P25713 68 aa3.52□□□□□ -1.85
HMGB3P4-201ENST00000428776 KRTAP5-2Q701N4 177 aa3.46□□□□□ -1.86
HMGB3P4-201ENST00000428776 LCE3DQ9BYE3 92 aa3.32□□□□□ -1.88
HMGB3P4-201ENST00000428776 AHNAK2Q8IVF2 5795 aa3.31□□□□□ -1.88
HMGB3P4-201ENST00000428776 INE1O15225 51 aa3.3□□□□□ -1.88
HMGB3P4-201ENST00000428776 KRTAP5-10Q6L8G5 202 aa3.23□□□□□ -1.89
HMGB3P4-201ENST00000428776 LCE3EQ5T5B0 92 aa3.22□□□□□ -1.89
HMGB3P4-201ENST00000428776 KRTAP5-7Q6L8G8 165 aa3.15□□□□□ -1.91
HMGB3P4-201ENST00000428776 OBSCNQ5VST9 7968 aa3.12□□□□□ -1.91
HMGB3P4-201ENST00000428776 LCE1EQ5T753 118 aa3.09□□□□□ -1.91
HMGB3P4-201ENST00000428776 KRTAP5-8O75690 187 aa3.01□□□□□ -1.93
HMGB3P4-201ENST00000428776 KRTAP5-1Q6L8H4 278 aa2.99□□□□□ -1.93
HMGB3P4-201ENST00000428776 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.93□□□□□ -1.94
HMGB3P4-201ENST00000428776 LCE1CQ5T751 118 aa2.87□□□□□ -1.95
HMGB3P4-201ENST00000428776 LCE1BQ5T7P3 118 aa2.87□□□□□ -1.95
HMGB3P4-201ENST00000428776 KRTAP5-11Q6L8G4 156 aa2.84□□□□□ -1.95
HMGB3P4-201ENST00000428776 MUC5ACP98088 5654 aa2.79□□□□□ -1.96
HMGB3P4-201ENST00000428776 AHNAKQ09666 5890 aaKnown RBP2.78□□□□□ -1.96
HMGB3P4-201ENST00000428776 MUC5BQ9HC84 5762 aaPredicted RBP2.74□□□□□ -1.97
HMGB3P4-201ENST00000428776 PRM1P04553 51 aa2.74□□□□□ -1.97
HMGB3P4-201ENST00000428776 KRTAP21-2Q3LI59 83 aa2.5□□□□□ -2.01
HMGB3P4-201ENST00000428776 KRTAP4-4Q9BYR3 166 aa2.44□□□□□ -2.02
HMGB3P4-201ENST00000428776 LCE1FQ5T754 118 aa2.34□□□□□ -2.03
HMGB3P4-201ENST00000428776 PHGR1C9JFL3 82 aa2.18□□□□□ -2.06
HMGB3P4-201ENST00000428776 MUC19Q7Z5P9 8384 aa1.84□□□□□ -2.11
HMGB3P4-201ENST00000428776 KRTAP21-1Q3LI58 79 aa1.67□□□□□ -2.14
HMGB3P4-201ENST00000428776 MUC16Q8WXI7 14507 aa1.35□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 40.2 ms