RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 Q5VSD8 79 aa1.09□□□□□ -2.23
LINC01040-201ENST00000425048 FAT4Q6V0I7 4981 aa1.09□□□□□ -2.24
LINC01040-201ENST00000425048 TENM3Q9P273 2699 aa1.09□□□□□ -2.24
LINC01040-201ENST00000425048 TNXBP22105 4242 aa1.09□□□□□ -2.24
LINC01040-201ENST00000425048 HSPG2P98160 4391 aa1.08□□□□□ -2.24
LINC01040-201ENST00000425048 C9orf92A6NGG3 77 aa1.08□□□□□ -2.24
LINC01040-201ENST00000425048 FAT2Q9NYQ8 4349 aa1.08□□□□□ -2.24
LINC01040-201ENST00000425048 LRP1Q07954 4544 aaKnown RBP1.08□□□□□ -2.24
LINC01040-201ENST00000425048 ACANP16112 2415 aa1.07□□□□□ -2.24
LINC01040-201ENST00000425048 AHNAK2Q8IVF2 5795 aa1.07□□□□□ -2.24
LINC01040-201ENST00000425048 SSPOA2VEC9 5147 aa1.06□□□□□ -2.24
LINC01040-201ENST00000425048 FAT3Q8TDW7 4589 aa1.06□□□□□ -2.24
LINC01040-201ENST00000425048 PKHD1P08F94 4074 aa1.05□□□□□ -2.24
LINC01040-201ENST00000425048 PLECQ15149 4684 aaKnown RBP1.05□□□□□ -2.24
LINC01040-201ENST00000425048 ITPR2Q14571 2701 aa1.05□□□□□ -2.24
LINC01040-201ENST00000425048 DYNC1H1Q14204 4646 aaKnown RBP1.03□□□□□ -2.24
LINC01040-201ENST00000425048 NEBP20929 6669 aa1.01□□□□□ -2.25
LINC01040-201ENST00000425048 MACF1Q9UPN3 7388 aaKnown RBP1□□□□□ -2.25
LINC01040-201ENST00000425048 TNP1P09430 55 aa1□□□□□ -2.25
LINC01040-201ENST00000425048 FSIP2Q5CZC0 6907 aa1□□□□□ -2.25
LINC01040-201ENST00000425048 STARD9Q9P2P6 4700 aa1□□□□□ -2.25
LINC01040-201ENST00000425048 MGAM2Q2M2H8 2515 aa0.99□□□□□ -2.25
LINC01040-201ENST00000425048 LRP1BQ9NZR2 4599 aa0.99□□□□□ -2.25
LINC01040-201ENST00000425048 FAT1Q14517 4588 aa0.98□□□□□ -2.25
LINC01040-201ENST00000425048 KRTAP20-1Q3LI63 56 aa0.97□□□□□ -2.25
LINC01040-201ENST00000425048 AHNAKQ09666 5890 aaKnown RBP0.96□□□□□ -2.26
LINC01040-201ENST00000425048 RNF213Q63HN8 5207 aa0.95□□□□□ -2.26
LINC01040-201ENST00000425048 SYNE2Q8WXH0 6885 aaKnown RBP0.95□□□□□ -2.26
LINC01040-201ENST00000425048 KRTAP10-4P60372 401 aaPredicted RBP0.95□□□□□ -2.26
LINC01040-201ENST00000425048 KRTAP8-1Q8IUC2 63 aa0.95□□□□□ -2.26
LINC01040-201ENST00000425048 MUC5BQ9HC84 5762 aaPredicted RBP0.94□□□□□ -2.26
LINC01040-201ENST00000425048 KRTAP2-3P0C7H8 128 aa0.94□□□□□ -2.26
LINC01040-201ENST00000425048 KRTAP2-4Q9BYR9 128 aa0.94□□□□□ -2.26
LINC01040-201ENST00000425048 KRTAP2-1Q9BYU5 128 aa0.94□□□□□ -2.26
LINC01040-201ENST00000425048 HMCN2Q8NDA2 5059 aa0.92□□□□□ -2.26
LINC01040-201ENST00000425048 MUC17Q685J3 4493 aa0.91□□□□□ -2.26
LINC01040-201ENST00000425048 SMR3BP02814 79 aaPredicted RBP0.89□□□□□ -2.27
LINC01040-201ENST00000425048 KRTAP19-2Q3LHN2 52 aa0.89□□□□□ -2.27
LINC01040-201ENST00000425048 LPAP08519 4548 aa0.88□□□□□ -2.27
LINC01040-201ENST00000425048 KMT2DO14686 5537 aa0.86□□□□□ -2.27
LINC01040-201ENST00000425048 KRTAP19-5Q3LI72 72 aa0.84□□□□□ -2.27
LINC01040-201ENST00000425048 SPRR2GQ9BYE4 73 aa0.84□□□□□ -2.27
LINC01040-201ENST00000425048 DSTQ03001 7570 aaKnown RBP0.84□□□□□ -2.27
LINC01040-201ENST00000425048 MDN1Q9NU22 5596 aa0.83□□□□□ -2.28
LINC01040-201ENST00000425048 M0R2T5 61 aa0.83□□□□□ -2.28
LINC01040-201ENST00000425048 MUC5ACP98088 5654 aa0.82□□□□□ -2.28
LINC01040-201ENST00000425048 MT1HL1P0DM35 61 aa0.82□□□□□ -2.28
LINC01040-201ENST00000425048 LRP2P98164 4655 aa0.81□□□□□ -2.28
LINC01040-201ENST00000425048 MT1XP80297 61 aa0.8□□□□□ -2.28
LINC01040-201ENST00000425048 MUC12Q9UKN1 5478 aa0.78□□□□□ -2.28
LINC01040-201ENST00000425048 KRTAP19-8Q3LI54 63 aa0.78□□□□□ -2.28
LINC01040-201ENST00000425048 PRM1P04553 51 aa0.77□□□□□ -2.29
LINC01040-201ENST00000425048 MT1BP07438 61 aa0.77□□□□□ -2.29
LINC01040-201ENST00000425048 USH2AO75445 5202 aa0.76□□□□□ -2.29
LINC01040-201ENST00000425048 KRTAP19-7Q3SYF9 63 aa0.72□□□□□ -2.29
LINC01040-201ENST00000425048 SYNE1Q8NF91 8797 aaKnown RBP0.71□□□□□ -2.3
LINC01040-201ENST00000425048 MT2AP02795 61 aa0.71□□□□□ -2.3
LINC01040-201ENST00000425048 MT1AP04731 61 aa0.71□□□□□ -2.3
LINC01040-201ENST00000425048 MT1FP04733 61 aa0.71□□□□□ -2.3
LINC01040-201ENST00000425048 MT1EP04732 61 aa0.7□□□□□ -2.3
LINC01040-201ENST00000425048 MT1LQ93083 61 aa0.7□□□□□ -2.3
LINC01040-201ENST00000425048 KRTAP6-2Q3LI66 62 aa0.69□□□□□ -2.3
LINC01040-201ENST00000425048 MT1GP13640 62 aa0.65□□□□□ -2.31
LINC01040-201ENST00000425048 MT1HP80294 61 aa0.65□□□□□ -2.31
LINC01040-201ENST00000425048 SPRR2FQ96RM1 72 aa0.64□□□□□ -2.31
LINC01040-201ENST00000425048 MT1MQ8N339 61 aa0.62□□□□□ -2.31
LINC01040-201ENST00000425048 SPRR2AP35326 72 aa0.6□□□□□ -2.31
LINC01040-201ENST00000425048 KRTAP6-1Q3LI64 71 aa0.6□□□□□ -2.31
LINC01040-201ENST00000425048 SPRR2DP22532 72 aa0.59□□□□□ -2.31
LINC01040-201ENST00000425048 SPRR2BP35325 72 aa0.59□□□□□ -2.31
LINC01040-201ENST00000425048 SPRR2EP22531 72 aa0.58□□□□□ -2.32
LINC01040-201ENST00000425048 KRTAP19-3Q7Z4W3 81 aa0.56□□□□□ -2.32
LINC01040-201ENST00000425048 KRTAP21-1Q3LI58 79 aa0.54□□□□□ -2.32
LINC01040-201ENST00000425048 PHGR1C9JFL3 82 aa0.48□□□□□ -2.33
LINC01040-201ENST00000425048 KRTAP19-6Q3LI70 58 aa0.48□□□□□ -2.33
LINC01040-201ENST00000425048 MT4P47944 62 aa0.37□□□□□ -2.35
LINC01040-201ENST00000425048 KRTAP20-2Q3LI61 65 aa0.31□□□□□ -2.36
Retrieved 77 of 20,778 RNA–protein pairs in 6.5 ms