RNA–Protein interactions for RNA: ENST00000420138.5

GPC1-202, Transcript of glypican 1, humanhuman

TSL 5 BASIC

Gene GPC1, Length 1,835 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-202ENST00000420138 KRTAP5-9P26371 169 aa7.43□□□□□ -1.22
GPC1-202ENST00000420138 LCE3CQ5T5A8 94 aa7.38□□□□□ -1.23
GPC1-202ENST00000420138 MUC12Q9UKN1 5478 aa7.37□□□□□ -1.23
GPC1-202ENST00000420138 KRTAP6-3Q3LI67 103 aa7.37□□□□□ -1.23
GPC1-202ENST00000420138 KRTAP19-4Q3LI73 84 aa7.29□□□□□ -1.24
GPC1-202ENST00000420138 KRTAP4-7Q9BYR0 210 aa7.29□□□□□ -1.24
GPC1-202ENST00000420138 KRTAP19-3Q7Z4W3 81 aa7.27□□□□□ -1.25
GPC1-202ENST00000420138 KRTAP9-7A8MTY7 169 aa7.24□□□□□ -1.25
GPC1-202ENST00000420138 MT1GP13640 62 aa7.18□□□□□ -1.26
GPC1-202ENST00000420138 LCE1AQ5T7P2 110 aa7.16□□□□□ -1.26
GPC1-202ENST00000420138 SPRR2EP22531 72 aa7.15□□□□□ -1.27
GPC1-202ENST00000420138 SPRR2BP35325 72 aa7.15□□□□□ -1.27
GPC1-202ENST00000420138 SPRR2AP35326 72 aa7.15□□□□□ -1.27
GPC1-202ENST00000420138 LCE5AQ5TCM9 118 aa7.15□□□□□ -1.27
GPC1-202ENST00000420138 MT1MQ8N339 61 aa7.14□□□□□ -1.27
GPC1-202ENST00000420138 A0A0A0MQY5 61 aa7.11□□□□□ -1.27
GPC1-202ENST00000420138 MDN1Q9NU22 5596 aa7.09□□□□□ -1.27
GPC1-202ENST00000420138 KRTAP9-6A8MVA2 160 aa7.08□□□□□ -1.28
GPC1-202ENST00000420138 KRTAP4-3Q9BYR4 195 aa7.06□□□□□ -1.28
GPC1-202ENST00000420138 SPRR2DP22532 72 aa6.89□□□□□ -1.31
GPC1-202ENST00000420138 LOC100996750A0A140TA64 210 aa6.83□□□□□ -1.32
GPC1-202ENST00000420138 DSTQ03001 7570 aaKnown RBP6.83□□□□□ -1.32
GPC1-202ENST00000420138 NEBP20929 6669 aa6.82□□□□□ -1.32
GPC1-202ENST00000420138 KRTAP2-3P0C7H8 128 aa6.66□□□□□ -1.34
GPC1-202ENST00000420138 KRTAP2-4Q9BYR9 128 aa6.66□□□□□ -1.34
GPC1-202ENST00000420138 KRTAP2-1Q9BYU5 128 aa6.66□□□□□ -1.34
GPC1-202ENST00000420138 LCE3BQ5TA77 95 aa6.63□□□□□ -1.35
GPC1-202ENST00000420138 INE1O15225 51 aa6.57□□□□□ -1.36
GPC1-202ENST00000420138 KRTAP5-5Q701N2 237 aaPredicted RBP6.47□□□□□ -1.37
GPC1-202ENST00000420138 KRTAP20-1Q3LI63 56 aa6.42□□□□□ -1.38
GPC1-202ENST00000420138 KRTAP2-2Q9BYT5 123 aa6.33□□□□□ -1.4
GPC1-202ENST00000420138 MT1AP04731 61 aa6.31□□□□□ -1.4
GPC1-202ENST00000420138 KRTAP6-1Q3LI64 71 aa6.29□□□□□ -1.4
GPC1-202ENST00000420138 KRTAP5-4Q6L8H1 288 aa6.15□□□□□ -1.42
GPC1-202ENST00000420138 SYNE1Q8NF91 8797 aaKnown RBP6.15□□□□□ -1.42
GPC1-202ENST00000420138 LCE4AQ5TA78 99 aa6.09□□□□□ -1.43
GPC1-202ENST00000420138 MT4P47944 62 aa5.99□□□□□ -1.45
GPC1-202ENST00000420138 KRTAP9-4Q9BYQ2 154 aa5.99□□□□□ -1.45
GPC1-202ENST00000420138 KRTAP12-4P60329 112 aa5.98□□□□□ -1.45
GPC1-202ENST00000420138 KRTAP4-9Q9BYQ8 210 aa5.97□□□□□ -1.45
GPC1-202ENST00000420138 KRTAP4-6Q9BYQ5 205 aa5.91□□□□□ -1.46
GPC1-202ENST00000420138 LCE1DQ5T752 114 aa5.9□□□□□ -1.47
GPC1-202ENST00000420138 KRTAP20-2Q3LI61 65 aa5.78□□□□□ -1.48
GPC1-202ENST00000420138 KRTAP6-2Q3LI66 62 aa5.77□□□□□ -1.49
GPC1-202ENST00000420138 HMCN1Q96RW7 5635 aa5.74□□□□□ -1.49
GPC1-202ENST00000420138 MT3P25713 68 aa5.69□□□□□ -1.5
GPC1-202ENST00000420138 LCE3DQ9BYE3 92 aa5.6□□□□□ -1.51
GPC1-202ENST00000420138 KRTAP5-2Q701N4 177 aa5.57□□□□□ -1.52
GPC1-202ENST00000420138 KRTAP5-3Q6L8H2 238 aa5.56□□□□□ -1.52
GPC1-202ENST00000420138 LCE3EQ5T5B0 92 aa5.51□□□□□ -1.53
GPC1-202ENST00000420138 OBSCNQ5VST9 7968 aa5.33□□□□□ -1.56
GPC1-202ENST00000420138 AHNAK2Q8IVF2 5795 aa5.12□□□□□ -1.59
GPC1-202ENST00000420138 KRTAP4-11Q9BYQ6 195 aa5.05□□□□□ -1.6
GPC1-202ENST00000420138 PRM1P04553 51 aa5.02□□□□□ -1.61
GPC1-202ENST00000420138 KRTAP5-10Q6L8G5 202 aa4.97□□□□□ -1.61
GPC1-202ENST00000420138 LCE1EQ5T753 118 aa4.93□□□□□ -1.62
GPC1-202ENST00000420138 KRTAP5-8O75690 187 aa4.86□□□□□ -1.63
GPC1-202ENST00000420138 KRTAP5-1Q6L8H4 278 aa4.83□□□□□ -1.64
GPC1-202ENST00000420138 GPR98Q8WXG9 6306 aa4.73□□□□□ -1.65
GPC1-202ENST00000420138 MUC5ACP98088 5654 aa4.66□□□□□ -1.66
GPC1-202ENST00000420138 LCE1BQ5T7P3 118 aa4.66□□□□□ -1.66
GPC1-202ENST00000420138 KRTAP5-7Q6L8G8 165 aa4.66□□□□□ -1.66
GPC1-202ENST00000420138 KRTAP4-2Q9BYR5 136 aa4.65□□□□□ -1.66
GPC1-202ENST00000420138 LCE1CQ5T751 118 aa4.61□□□□□ -1.67
GPC1-202ENST00000420138 KRTAP9-9Q9BYP9 154 aa4.43□□□□□ -1.7
GPC1-202ENST00000420138 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.33□□□□□ -1.72
GPC1-202ENST00000420138 KRTAP21-2Q3LI59 83 aa4.14□□□□□ -1.75
GPC1-202ENST00000420138 MUC5BQ9HC84 5762 aaPredicted RBP4.09□□□□□ -1.75
GPC1-202ENST00000420138 KRTAP5-11Q6L8G4 156 aa4.07□□□□□ -1.76
GPC1-202ENST00000420138 KRTAP4-12Q9BQ66 201 aa3.9□□□□□ -1.79
GPC1-202ENST00000420138 AHNAKQ09666 5890 aaKnown RBP3.85□□□□□ -1.79
GPC1-202ENST00000420138 LCE1FQ5T754 118 aa3.71□□□□□ -1.82
GPC1-202ENST00000420138 KRTAP4-4Q9BYR3 166 aa3.67□□□□□ -1.82
GPC1-202ENST00000420138 PHGR1C9JFL3 82 aa3.5□□□□□ -1.85
GPC1-202ENST00000420138 MUC19Q7Z5P9 8384 aa3.17□□□□□ -1.9
GPC1-202ENST00000420138 KRTAP21-1Q3LI58 79 aa3.14□□□□□ -1.91
GPC1-202ENST00000420138 MUC16Q8WXI7 14507 aa2.22□□□□□ -2.05
Retrieved 77 of 20,778 RNA–protein pairs in 12.1 ms