RNA–Protein interactions for RNA: ENST00000417724.1

HLA-DPA1-241, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 305 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-241ENST00000417724 KRTAP12-4P60329 112 aa2.63□□□□□ -1.99
HLA-DPA1-241ENST00000417724 LCE3AQ5TA76 89 aa2.63□□□□□ -1.99
HLA-DPA1-241ENST00000417724 SPANXA2-OT1Q8N9U9 137 aa2.62□□□□□ -1.99
HLA-DPA1-241ENST00000417724 J3QR89 54 aa2.61□□□□□ -1.99
HLA-DPA1-241ENST00000417724 A0A1B0GU33 70 aa2.6□□□□□ -1.99
HLA-DPA1-241ENST00000417724 TNP1P09430 55 aa2.6□□□□□ -1.99
HLA-DPA1-241ENST00000417724 SNURFQ9Y675 71 aa2.6□□□□□ -1.99
HLA-DPA1-241ENST00000417724 KRTAP5-5Q701N2 237 aaPredicted RBP2.59□□□□□ -1.99
HLA-DPA1-241ENST00000417724 H3BS24 57 aa2.55□□□□□ -2
HLA-DPA1-241ENST00000417724 COA5Q86WW8 74 aa2.55□□□□□ -2
HLA-DPA1-241ENST00000417724 KRTAP12-3P60328 96 aa2.54□□□□□ -2
HLA-DPA1-241ENST00000417724 SMIM26A0A096LP01 95 aa2.53□□□□□ -2
HLA-DPA1-241ENST00000417724 A0A1B0GV90 55 aa2.49□□□□□ -2.01
HLA-DPA1-241ENST00000417724 A8MU10 97 aa2.48□□□□□ -2.01
HLA-DPA1-241ENST00000417724 AHNAKQ09666 5890 aaKnown RBP2.46□□□□□ -2.02
HLA-DPA1-241ENST00000417724 SERP2Q8N6R1 65 aa2.45□□□□□ -2.02
HLA-DPA1-241ENST00000417724 SYNE1Q8NF91 8797 aaKnown RBP2.45□□□□□ -2.02
HLA-DPA1-241ENST00000417724 A0A1B0GU69 56 aa2.44□□□□□ -2.02
HLA-DPA1-241ENST00000417724 MUC5ACP98088 5654 aa2.44□□□□□ -2.02
HLA-DPA1-241ENST00000417724 KRTAP5-8O75690 187 aa2.42□□□□□ -2.02
HLA-DPA1-241ENST00000417724 KRTAP5-2Q701N4 177 aa2.42□□□□□ -2.02
HLA-DPA1-241ENST00000417724 K7ERU9 68 aa2.38□□□□□ -2.03
HLA-DPA1-241ENST00000417724 MUC5BQ9HC84 5762 aaPredicted RBP2.36□□□□□ -2.03
HLA-DPA1-241ENST00000417724 MT1AP04731 61 aa2.35□□□□□ -2.03
HLA-DPA1-241ENST00000417724 KRTAP6-1Q3LI64 71 aa2.34□□□□□ -2.03
HLA-DPA1-241ENST00000417724 KRTAP25-1Q3LHN0 102 aa2.33□□□□□ -2.04
HLA-DPA1-241ENST00000417724 LCE3CQ5T5A8 94 aa2.33□□□□□ -2.04
HLA-DPA1-241ENST00000417724 H7BZZ5 65 aa2.32□□□□□ -2.04
HLA-DPA1-241ENST00000417724 PRR15LQ9BU68 103 aa2.31□□□□□ -2.04
HLA-DPA1-241ENST00000417724 KRTAP6-2Q3LI66 62 aa2.3□□□□□ -2.04
HLA-DPA1-241ENST00000417724 KRTAP15-1Q3LI76 137 aa2.3□□□□□ -2.04
HLA-DPA1-241ENST00000417724 OBSCNQ5VST9 7968 aa2.3□□□□□ -2.04
HLA-DPA1-241ENST00000417724 COX7CP15954 63 aa2.29□□□□□ -2.04
HLA-DPA1-241ENST00000417724 KRTAP23-1A1A580 65 aa2.23□□□□□ -2.05
HLA-DPA1-241ENST00000417724 UQCR11O14957 56 aa2.22□□□□□ -2.05
HLA-DPA1-241ENST00000417724 KRTAP5-1Q6L8H4 278 aa2.22□□□□□ -2.05
HLA-DPA1-241ENST00000417724 LINC01558Q9Y6Z2 57 aa2.2□□□□□ -2.06
HLA-DPA1-241ENST00000417724 K7ERS5 55 aa2.18□□□□□ -2.06
HLA-DPA1-241ENST00000417724 MT3P25713 68 aa2.18□□□□□ -2.06
HLA-DPA1-241ENST00000417724 KRTAP9-6A8MVA2 160 aa2.17□□□□□ -2.06
HLA-DPA1-241ENST00000417724 MIR22HGQ0VDD5 57 aa2.14□□□□□ -2.07
HLA-DPA1-241ENST00000417724 ATP5EP56381 51 aaPredicted RBP2.11□□□□□ -2.07
HLA-DPA1-241ENST00000417724 RPS28P62857 69 aaKnown RBP2.08□□□□□ -2.08
HLA-DPA1-241ENST00000417724 ANAPC13Q9BS18 74 aa2.08□□□□□ -2.08
HLA-DPA1-241ENST00000417724 LCE1EQ5T753 118 aa2.06□□□□□ -2.08
HLA-DPA1-241ENST00000417724 CCDC179H3BU77 68 aa2.03□□□□□ -2.08
HLA-DPA1-241ENST00000417724 CDC42SE1Q9NRR8 79 aa2.01□□□□□ -2.09
HLA-DPA1-241ENST00000417724 Q1T7F1 81 aa1.99□□□□□ -2.09
HLA-DPA1-241ENST00000417724 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.97□□□□□ -2.09
HLA-DPA1-241ENST00000417724 PSPHP1O15172 72 aa1.95□□□□□ -2.1
HLA-DPA1-241ENST00000417724 ROMO1P60602 79 aa1.95□□□□□ -2.1
HLA-DPA1-241ENST00000417724 TMEM258P61165 79 aa1.95□□□□□ -2.1
HLA-DPA1-241ENST00000417724 LCE1BQ5T7P3 118 aa1.95□□□□□ -2.1
HLA-DPA1-241ENST00000417724 V9GYY9 64 aa1.93□□□□□ -2.1
HLA-DPA1-241ENST00000417724 LCE1CQ5T751 118 aa1.91□□□□□ -2.1
HLA-DPA1-241ENST00000417724 KRTAP5-11Q6L8G4 156 aa1.9□□□□□ -2.11
HLA-DPA1-241ENST00000417724 A6NED7 52 aa1.88□□□□□ -2.11
HLA-DPA1-241ENST00000417724 SVIPQ8NHG7 77 aa1.78□□□□□ -2.12
HLA-DPA1-241ENST00000417724 LCE1FQ5T754 118 aa1.77□□□□□ -2.13
HLA-DPA1-241ENST00000417724 PCP4P48539 62 aa1.75□□□□□ -2.13
HLA-DPA1-241ENST00000417724 PHGR1C9JFL3 82 aa1.7□□□□□ -2.14
HLA-DPA1-241ENST00000417724 KRTAP4-4Q9BYR3 166 aa1.64□□□□□ -2.15
HLA-DPA1-241ENST00000417724 LCE3DQ9BYE3 92 aa1.63□□□□□ -2.15
HLA-DPA1-241ENST00000417724 A0A0A0MQY5 61 aa1.61□□□□□ -2.15
HLA-DPA1-241ENST00000417724 KRTAP21-2Q3LI59 83 aa1.55□□□□□ -2.16
HLA-DPA1-241ENST00000417724 LCE3EQ5T5B0 92 aa1.5□□□□□ -2.17
HLA-DPA1-241ENST00000417724 MUC19Q7Z5P9 8384 aa1.44□□□□□ -2.18
HLA-DPA1-241ENST00000417724 NDUFAF8A1L188 74 aa1.37□□□□□ -2.19
HLA-DPA1-241ENST00000417724 PRAC1Q96KF2 57 aa1.35□□□□□ -2.19
HLA-DPA1-241ENST00000417724 BRK1Q8WUW1 75 aa1.33□□□□□ -2.2
HLA-DPA1-241ENST00000417724 KRTAP21-1Q3LI58 79 aa1.3□□□□□ -2.2
HLA-DPA1-241ENST00000417724 PMAIP1Q13794 54 aa1.23□□□□□ -2.21
HLA-DPA1-241ENST00000417724 LUZP6Q538Z0 58 aa1.13□□□□□ -2.23
HLA-DPA1-241ENST00000417724 MUC16Q8WXI7 14507 aa1.01□□□□□ -2.25
HLA-DPA1-241ENST00000417724 PRM1P04553 51 aa0.97□□□□□ -2.25
HLA-DPA1-241ENST00000417724 KTN1-AS1Q86SY8 53 aa0.89□□□□□ -2.27
HLA-DPA1-241ENST00000417724 PRO0628Q9UI54 55 aa0.85□□□□□ -2.27
HLA-DPA1-241ENST00000417724 INE1O15225 51 aa0.41□□□□□ -2.34
Retrieved 78 of 20,778 RNA–protein pairs in 41.2 ms