RNA–Protein interactions for RNA: ENST00000417448.1

VCP-202, Transcript of valosin containing protein, humanhuman

TSL 3

Gene VCP, Length 722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-202ENST00000417448 C10orf95Q9H7T3 257 aa6.79□□□□□ -1.32
VCP-202ENST00000417448 KRTAP19-3Q7Z4W3 81 aa6.71□□□□□ -1.34
VCP-202ENST00000417448 RPS28P62857 69 aaKnown RBP6.7□□□□□ -1.34
VCP-202ENST00000417448 LCE4AQ5TA78 99 aa6.7□□□□□ -1.34
VCP-202ENST00000417448 KRTAP19-7Q3SYF9 63 aa6.67□□□□□ -1.34
VCP-202ENST00000417448 KRTAP5-7Q6L8G8 165 aa6.66□□□□□ -1.34
VCP-202ENST00000417448 MT1EP04732 61 aa6.64□□□□□ -1.35
VCP-202ENST00000417448 A6NED7 52 aa6.62□□□□□ -1.35
VCP-202ENST00000417448 TNP1P09430 55 aa6.62□□□□□ -1.35
VCP-202ENST00000417448 KRTAP19-5Q3LI72 72 aa6.59□□□□□ -1.35
VCP-202ENST00000417448 LCE3AQ5TA76 89 aa6.58□□□□□ -1.36
VCP-202ENST00000417448 KRTAP4-6Q9BYQ5 205 aa6.55□□□□□ -1.36
VCP-202ENST00000417448 K7ERS5 55 aa6.53□□□□□ -1.36
VCP-202ENST00000417448 KRTAP5-3Q6L8H2 238 aa6.51□□□□□ -1.37
VCP-202ENST00000417448 KRTAP5-4Q6L8H1 288 aa6.5□□□□□ -1.37
VCP-202ENST00000417448 MT1GP13640 62 aa6.44□□□□□ -1.38
VCP-202ENST00000417448 SPRR5A0A1B0GTR4 108 aa6.41□□□□□ -1.38
VCP-202ENST00000417448 MT1MQ8N339 61 aa6.37□□□□□ -1.39
VCP-202ENST00000417448 KRTAP25-1Q3LHN0 102 aa6.36□□□□□ -1.39
VCP-202ENST00000417448 PP632Q6XCG6 107 aa6.34□□□□□ -1.39
VCP-202ENST00000417448 MT1LQ93083 61 aa6.33□□□□□ -1.4
VCP-202ENST00000417448 CDC42SE1Q9NRR8 79 aa6.33□□□□□ -1.4
VCP-202ENST00000417448 KRTAP4-3Q9BYR4 195 aa6.3□□□□□ -1.4
VCP-202ENST00000417448 KRTAP12-3P60328 96 aa6.28□□□□□ -1.4
VCP-202ENST00000417448 ROMO1P60602 79 aa6.21□□□□□ -1.42
VCP-202ENST00000417448 KRTAP20-2Q3LI61 65 aa6.18□□□□□ -1.42
VCP-202ENST00000417448 KRTAP4-7Q9BYR0 210 aa6.15□□□□□ -1.42
VCP-202ENST00000417448 KRTAP23-1A1A580 65 aa6.07□□□□□ -1.44
VCP-202ENST00000417448 BRK1Q8WUW1 75 aa6.02□□□□□ -1.45
VCP-202ENST00000417448 KRTAP15-1Q3LI76 137 aa5.95□□□□□ -1.46
VCP-202ENST00000417448 KRTAP5-5Q701N2 237 aaPredicted RBP5.93□□□□□ -1.46
VCP-202ENST00000417448 KRTAP12-4P60329 112 aa5.86□□□□□ -1.47
VCP-202ENST00000417448 SYNE1Q8NF91 8797 aaKnown RBP5.84□□□□□ -1.47
VCP-202ENST00000417448 AHNAKQ09666 5890 aaKnown RBP5.83□□□□□ -1.48
VCP-202ENST00000417448 LCE3CQ5T5A8 94 aa5.82□□□□□ -1.48
VCP-202ENST00000417448 KRTAP4-11Q9BYQ6 195 aa5.81□□□□□ -1.48
VCP-202ENST00000417448 LOC100996750A0A140TA64 210 aa5.8□□□□□ -1.48
VCP-202ENST00000417448 MUC5ACP98088 5654 aa5.79□□□□□ -1.48
VCP-202ENST00000417448 KRTAP19-4Q3LI73 84 aa5.74□□□□□ -1.49
VCP-202ENST00000417448 MUC5BQ9HC84 5762 aaPredicted RBP5.74□□□□□ -1.49
VCP-202ENST00000417448 KRTAP5-8O75690 187 aa5.69□□□□□ -1.5
VCP-202ENST00000417448 PMAIP1Q13794 54 aa5.65□□□□□ -1.5
VCP-202ENST00000417448 KRTAP5-2Q701N4 177 aa5.57□□□□□ -1.52
VCP-202ENST00000417448 KRTAP9-6A8MVA2 160 aa5.55□□□□□ -1.52
VCP-202ENST00000417448 PRAC1Q96KF2 57 aa5.49□□□□□ -1.53
VCP-202ENST00000417448 KRTAP9-9Q9BYP9 154 aa5.43□□□□□ -1.54
VCP-202ENST00000417448 PRO0628Q9UI54 55 aa5.41□□□□□ -1.54
VCP-202ENST00000417448 OBSCNQ5VST9 7968 aa5.4□□□□□ -1.55
VCP-202ENST00000417448 KRTAP6-1Q3LI64 71 aa5.38□□□□□ -1.55
VCP-202ENST00000417448 MT1AP04731 61 aa5.36□□□□□ -1.55
VCP-202ENST00000417448 KRTAP6-2Q3LI66 62 aa5.2□□□□□ -1.58
VCP-202ENST00000417448 KRTAP9-4Q9BYQ2 154 aa5.17□□□□□ -1.58
VCP-202ENST00000417448 KRTAP5-1Q6L8H4 278 aa5.14□□□□□ -1.59
VCP-202ENST00000417448 KTN1-AS1Q86SY8 53 aa5.12□□□□□ -1.59
VCP-202ENST00000417448 SVIPQ8NHG7 77 aa4.94□□□□□ -1.62
VCP-202ENST00000417448 MT3P25713 68 aa4.87□□□□□ -1.63
VCP-202ENST00000417448 H3BS24 57 aa4.78□□□□□ -1.64
VCP-202ENST00000417448 LCE1EQ5T753 118 aa4.59□□□□□ -1.67
VCP-202ENST00000417448 KRTAP4-2Q9BYR5 136 aa4.48□□□□□ -1.69
VCP-202ENST00000417448 LUZP6Q538Z0 58 aa4.42□□□□□ -1.7
VCP-202ENST00000417448 LCE1BQ5T7P3 118 aa4.41□□□□□ -1.7
VCP-202ENST00000417448 KRTAP4-12Q9BQ66 201 aa4.38□□□□□ -1.71
VCP-202ENST00000417448 LCE1CQ5T751 118 aa4.28□□□□□ -1.72
VCP-202ENST00000417448 LCE3DQ9BYE3 92 aa4.24□□□□□ -1.73
VCP-202ENST00000417448 KRTAP5-11Q6L8G4 156 aa4.1□□□□□ -1.75
VCP-202ENST00000417448 LCE3EQ5T5B0 92 aa4.03□□□□□ -1.76
VCP-202ENST00000417448 PHGR1C9JFL3 82 aa4.01□□□□□ -1.77
VCP-202ENST00000417448 LCE1FQ5T754 118 aa3.98□□□□□ -1.77
VCP-202ENST00000417448 NDUFAF8A1L188 74 aa3.91□□□□□ -1.78
VCP-202ENST00000417448 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.82□□□□□ -1.8
VCP-202ENST00000417448 KRTAP21-2Q3LI59 83 aa3.52□□□□□ -1.85
VCP-202ENST00000417448 MUC19Q7Z5P9 8384 aa3.39□□□□□ -1.87
VCP-202ENST00000417448 KRTAP4-4Q9BYR3 166 aa3.35□□□□□ -1.87
VCP-202ENST00000417448 PRM1P04553 51 aa3.24□□□□□ -1.89
VCP-202ENST00000417448 A0A0A0MQY5 61 aa3.21□□□□□ -1.9
VCP-202ENST00000417448 INE1O15225 51 aa3.05□□□□□ -1.92
VCP-202ENST00000417448 KRTAP21-1Q3LI58 79 aa3.02□□□□□ -1.93
VCP-202ENST00000417448 MUC16Q8WXI7 14507 aa2.33□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 11.4 ms