RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 C10orf95Q9H7T3 257 aa5.13□□□□□ -1.59
RPS28-201ENST00000417088 SMIM26A0A096LP01 95 aa5.06□□□□□ -1.6
RPS28-201ENST00000417088 A8MU10 97 aa5.05□□□□□ -1.6
RPS28-201ENST00000417088 TNP1P09430 55 aa5.05□□□□□ -1.6
RPS28-201ENST00000417088 KRTAP4-7Q9BYR0 210 aa5.01□□□□□ -1.61
RPS28-201ENST00000417088 A0A1B0GU69 56 aa5□□□□□ -1.61
RPS28-201ENST00000417088 ATP5EP56381 51 aaPredicted RBP4.98□□□□□ -1.61
RPS28-201ENST00000417088 KRTAP5-7Q6L8G8 165 aa4.97□□□□□ -1.61
RPS28-201ENST00000417088 KRTAP5-3Q6L8H2 238 aa4.97□□□□□ -1.61
RPS28-201ENST00000417088 TMEM258P61165 79 aa4.94□□□□□ -1.62
RPS28-201ENST00000417088 KRTAP12-3P60328 96 aa4.92□□□□□ -1.62
RPS28-201ENST00000417088 KRTAP20-2Q3LI61 65 aa4.91□□□□□ -1.62
RPS28-201ENST00000417088 KRTAP5-5Q701N2 237 aaPredicted RBP4.88□□□□□ -1.63
RPS28-201ENST00000417088 SPRR5A0A1B0GTR4 108 aa4.86□□□□□ -1.63
RPS28-201ENST00000417088 LINC01558Q9Y6Z2 57 aa4.81□□□□□ -1.64
RPS28-201ENST00000417088 SYNE1Q8NF91 8797 aaKnown RBP4.81□□□□□ -1.64
RPS28-201ENST00000417088 KRTAP12-4P60329 112 aa4.79□□□□□ -1.64
RPS28-201ENST00000417088 PRR15LQ9BU68 103 aa4.76□□□□□ -1.65
RPS28-201ENST00000417088 LOC100996750A0A140TA64 210 aa4.75□□□□□ -1.65
RPS28-201ENST00000417088 PCP4P48539 62 aa4.73□□□□□ -1.65
RPS28-201ENST00000417088 KRTAP25-1Q3LHN0 102 aa4.64□□□□□ -1.67
RPS28-201ENST00000417088 UQCR11O14957 56 aa4.62□□□□□ -1.67
RPS28-201ENST00000417088 Q1T7F1 81 aa4.62□□□□□ -1.67
RPS28-201ENST00000417088 KRTAP19-4Q3LI73 84 aa4.61□□□□□ -1.67
RPS28-201ENST00000417088 PSPHP1O15172 72 aa4.6□□□□□ -1.67
RPS28-201ENST00000417088 V9GYY9 64 aa4.6□□□□□ -1.67
RPS28-201ENST00000417088 RPS28P62857 69 aaKnown RBP4.55□□□□□ -1.68
RPS28-201ENST00000417088 MIR22HGQ0VDD5 57 aa4.55□□□□□ -1.68
RPS28-201ENST00000417088 KRTAP4-11Q9BYQ6 195 aa4.54□□□□□ -1.68
RPS28-201ENST00000417088 KRTAP15-1Q3LI76 137 aa4.52□□□□□ -1.69
RPS28-201ENST00000417088 LCE3CQ5T5A8 94 aa4.51□□□□□ -1.69
RPS28-201ENST00000417088 KRTAP5-2Q701N4 177 aa4.51□□□□□ -1.69
RPS28-201ENST00000417088 MT1AP04731 61 aa4.46□□□□□ -1.7
RPS28-201ENST00000417088 KRTAP6-1Q3LI64 71 aa4.46□□□□□ -1.7
RPS28-201ENST00000417088 AHNAKQ09666 5890 aaKnown RBP4.45□□□□□ -1.7
RPS28-201ENST00000417088 KRTAP23-1A1A580 65 aa4.45□□□□□ -1.7
RPS28-201ENST00000417088 A6NED7 52 aa4.43□□□□□ -1.7
RPS28-201ENST00000417088 K7ERS5 55 aa4.42□□□□□ -1.7
RPS28-201ENST00000417088 KRTAP5-8O75690 187 aa4.4□□□□□ -1.71
RPS28-201ENST00000417088 MUC5ACP98088 5654 aa4.4□□□□□ -1.71
RPS28-201ENST00000417088 MUC5BQ9HC84 5762 aaPredicted RBP4.39□□□□□ -1.71
RPS28-201ENST00000417088 OBSCNQ5VST9 7968 aa4.39□□□□□ -1.71
RPS28-201ENST00000417088 KRTAP9-4Q9BYQ2 154 aa4.34□□□□□ -1.71
RPS28-201ENST00000417088 KRTAP6-2Q3LI66 62 aa4.3□□□□□ -1.72
RPS28-201ENST00000417088 KRTAP9-6A8MVA2 160 aa4.29□□□□□ -1.72
RPS28-201ENST00000417088 CDC42SE1Q9NRR8 79 aa4.28□□□□□ -1.72
RPS28-201ENST00000417088 KRTAP9-9Q9BYP9 154 aa4.2□□□□□ -1.74
RPS28-201ENST00000417088 ROMO1P60602 79 aa4.16□□□□□ -1.74
RPS28-201ENST00000417088 MT3P25713 68 aa4.09□□□□□ -1.75
RPS28-201ENST00000417088 KRTAP5-1Q6L8H4 278 aa4.09□□□□□ -1.75
RPS28-201ENST00000417088 BRK1Q8WUW1 75 aa4.04□□□□□ -1.76
RPS28-201ENST00000417088 LCE1EQ5T753 118 aa3.82□□□□□ -1.8
RPS28-201ENST00000417088 PMAIP1Q13794 54 aa3.79□□□□□ -1.8
RPS28-201ENST00000417088 PRO0628Q9UI54 55 aa3.69□□□□□ -1.82
RPS28-201ENST00000417088 PRAC1Q96KF2 57 aa3.68□□□□□ -1.82
RPS28-201ENST00000417088 KRTAP4-2Q9BYR5 136 aa3.64□□□□□ -1.83
RPS28-201ENST00000417088 LCE1BQ5T7P3 118 aa3.62□□□□□ -1.83
RPS28-201ENST00000417088 LCE1CQ5T751 118 aa3.55□□□□□ -1.84
RPS28-201ENST00000417088 KTN1-AS1Q86SY8 53 aa3.49□□□□□ -1.85
RPS28-201ENST00000417088 SVIPQ8NHG7 77 aa3.42□□□□□ -1.86
RPS28-201ENST00000417088 KRTAP4-12Q9BQ66 201 aa3.39□□□□□ -1.87
RPS28-201ENST00000417088 KRTAP5-11Q6L8G4 156 aa3.23□□□□□ -1.89
RPS28-201ENST00000417088 LCE1FQ5T754 118 aa3.19□□□□□ -1.9
RPS28-201ENST00000417088 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.19□□□□□ -1.9
RPS28-201ENST00000417088 LCE3DQ9BYE3 92 aa3.19□□□□□ -1.9
RPS28-201ENST00000417088 PHGR1C9JFL3 82 aa3□□□□□ -1.93
RPS28-201ENST00000417088 LUZP6Q538Z0 58 aa2.98□□□□□ -1.93
RPS28-201ENST00000417088 LCE3EQ5T5B0 92 aa2.96□□□□□ -1.94
RPS28-201ENST00000417088 KRTAP21-2Q3LI59 83 aa2.94□□□□□ -1.94
RPS28-201ENST00000417088 KRTAP4-4Q9BYR3 166 aa2.74□□□□□ -1.97
RPS28-201ENST00000417088 MUC19Q7Z5P9 8384 aa2.71□□□□□ -1.98
RPS28-201ENST00000417088 NDUFAF8A1L188 74 aa2.62□□□□□ -1.99
RPS28-201ENST00000417088 H3BS24 57 aa2.35□□□□□ -2.03
RPS28-201ENST00000417088 KRTAP21-1Q3LI58 79 aa2.28□□□□□ -2.04
RPS28-201ENST00000417088 A0A0A0MQY5 61 aa2.23□□□□□ -2.05
RPS28-201ENST00000417088 PRM1P04553 51 aa2.17□□□□□ -2.06
RPS28-201ENST00000417088 INE1O15225 51 aa2.1□□□□□ -2.07
RPS28-201ENST00000417088 MUC16Q8WXI7 14507 aa1.88□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 5.6 ms