RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 LINC01558Q9Y6Z2 57 aa5.53□□□□□ -1.52
LIMS4-201ENST00000413601 TMEM258P61165 79 aa5.52□□□□□ -1.53
LIMS4-201ENST00000413601 MT1EP04732 61 aa5.5□□□□□ -1.53
LIMS4-201ENST00000413601 KRTAP19-5Q3LI72 72 aa5.45□□□□□ -1.54
LIMS4-201ENST00000413601 KRTAP19-3Q7Z4W3 81 aa5.44□□□□□ -1.54
LIMS4-201ENST00000413601 C10orf95Q9H7T3 257 aa5.44□□□□□ -1.54
LIMS4-201ENST00000413601 TNP1P09430 55 aa5.39□□□□□ -1.55
LIMS4-201ENST00000413601 UQCR11O14957 56 aa5.38□□□□□ -1.55
LIMS4-201ENST00000413601 LCE3AQ5TA76 89 aa5.36□□□□□ -1.55
LIMS4-201ENST00000413601 RPS28P62857 69 aaKnown RBP5.33□□□□□ -1.56
LIMS4-201ENST00000413601 MT1GP13640 62 aa5.32□□□□□ -1.56
LIMS4-201ENST00000413601 KRTAP23-1A1A580 65 aa5.27□□□□□ -1.57
LIMS4-201ENST00000413601 MIR22HGQ0VDD5 57 aa5.27□□□□□ -1.57
LIMS4-201ENST00000413601 PP632Q6XCG6 107 aa5.27□□□□□ -1.57
LIMS4-201ENST00000413601 MT1LQ93083 61 aa5.27□□□□□ -1.57
LIMS4-201ENST00000413601 KRTAP15-1Q3LI76 137 aa5.24□□□□□ -1.57
LIMS4-201ENST00000413601 MT1MQ8N339 61 aa5.24□□□□□ -1.57
LIMS4-201ENST00000413601 DSTQ03001 7570 aaKnown RBP5.23□□□□□ -1.57
LIMS4-201ENST00000413601 PSPHP1O15172 72 aa5.22□□□□□ -1.57
LIMS4-201ENST00000413601 V9GYY9 64 aa5.21□□□□□ -1.58
LIMS4-201ENST00000413601 Q1T7F1 81 aa5.19□□□□□ -1.58
LIMS4-201ENST00000413601 KRTAP12-3P60328 96 aa5.15□□□□□ -1.59
LIMS4-201ENST00000413601 K7ERS5 55 aa5.14□□□□□ -1.59
LIMS4-201ENST00000413601 KRTAP4-3Q9BYR4 195 aa5.14□□□□□ -1.59
LIMS4-201ENST00000413601 KRTAP25-1Q3LHN0 102 aa5.11□□□□□ -1.59
LIMS4-201ENST00000413601 A6NED7 52 aa5.03□□□□□ -1.6
LIMS4-201ENST00000413601 PRO0628Q9UI54 55 aa5□□□□□ -1.61
LIMS4-201ENST00000413601 MT4P47944 62 aa4.99□□□□□ -1.61
LIMS4-201ENST00000413601 GPR98Q8WXG9 6306 aa4.96□□□□□ -1.62
LIMS4-201ENST00000413601 KRTAP5-4Q6L8H1 288 aa4.95□□□□□ -1.62
LIMS4-201ENST00000413601 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.89□□□□□ -1.63
LIMS4-201ENST00000413601 CDC42SE1Q9NRR8 79 aa4.89□□□□□ -1.63
LIMS4-201ENST00000413601 BRK1Q8WUW1 75 aa4.83□□□□□ -1.64
LIMS4-201ENST00000413601 HMCN1Q96RW7 5635 aa4.83□□□□□ -1.64
LIMS4-201ENST00000413601 ROMO1P60602 79 aa4.82□□□□□ -1.64
LIMS4-201ENST00000413601 KRTAP5-5Q701N2 237 aaPredicted RBP4.8□□□□□ -1.64
LIMS4-201ENST00000413601 LCE3CQ5T5A8 94 aa4.75□□□□□ -1.65
LIMS4-201ENST00000413601 KRTAP5-11Q6L8G4 156 aa4.74□□□□□ -1.65
LIMS4-201ENST00000413601 PMAIP1Q13794 54 aa4.68□□□□□ -1.66
LIMS4-201ENST00000413601 KRTAP20-2Q3LI61 65 aa4.67□□□□□ -1.66
LIMS4-201ENST00000413601 SPRR5A0A1B0GTR4 108 aa4.65□□□□□ -1.67
LIMS4-201ENST00000413601 KRTAP12-4P60329 112 aa4.65□□□□□ -1.67
LIMS4-201ENST00000413601 KRTAP5-10Q6L8G5 202 aa4.62□□□□□ -1.67
LIMS4-201ENST00000413601 AHNAK2Q8IVF2 5795 aa4.62□□□□□ -1.67
LIMS4-201ENST00000413601 KTN1-AS1Q86SY8 53 aa4.58□□□□□ -1.68
LIMS4-201ENST00000413601 A0A0A0MQY5 61 aa4.56□□□□□ -1.68
LIMS4-201ENST00000413601 KRTAP9-6A8MVA2 160 aa4.49□□□□□ -1.69
LIMS4-201ENST00000413601 MT1AP04731 61 aa4.48□□□□□ -1.69
LIMS4-201ENST00000413601 SYNE1Q8NF91 8797 aaKnown RBP4.47□□□□□ -1.69
LIMS4-201ENST00000413601 KRTAP6-1Q3LI64 71 aa4.47□□□□□ -1.69
LIMS4-201ENST00000413601 LCE1EQ5T753 118 aa4.43□□□□□ -1.7
LIMS4-201ENST00000413601 KRTAP5-7Q6L8G8 165 aa4.42□□□□□ -1.7
LIMS4-201ENST00000413601 KRTAP5-2Q701N4 177 aa4.35□□□□□ -1.71
LIMS4-201ENST00000413601 KRTAP6-2Q3LI66 62 aa4.26□□□□□ -1.73
LIMS4-201ENST00000413601 KRTAP5-1Q6L8H4 278 aa4.21□□□□□ -1.74
LIMS4-201ENST00000413601 KRTAP5-8O75690 187 aa4.11□□□□□ -1.75
LIMS4-201ENST00000413601 MT3P25713 68 aa4.1□□□□□ -1.75
LIMS4-201ENST00000413601 PRAC1Q96KF2 57 aa4.1□□□□□ -1.75
LIMS4-201ENST00000413601 KRTAP4-4Q9BYR3 166 aa4.05□□□□□ -1.76
LIMS4-201ENST00000413601 OBSCNQ5VST9 7968 aa3.96□□□□□ -1.78
LIMS4-201ENST00000413601 AHNAKQ09666 5890 aaKnown RBP3.78□□□□□ -1.8
LIMS4-201ENST00000413601 MUC5ACP98088 5654 aa3.78□□□□□ -1.8
LIMS4-201ENST00000413601 MUC5BQ9HC84 5762 aaPredicted RBP3.74□□□□□ -1.81
LIMS4-201ENST00000413601 NDUFAF8A1L188 74 aa3.63□□□□□ -1.83
LIMS4-201ENST00000413601 LUZP6Q538Z0 58 aa3.56□□□□□ -1.84
LIMS4-201ENST00000413601 LCE1BQ5T7P3 118 aa3.54□□□□□ -1.84
LIMS4-201ENST00000413601 LCE1CQ5T751 118 aa3.47□□□□□ -1.85
LIMS4-201ENST00000413601 LCE1FQ5T754 118 aa3.47□□□□□ -1.85
LIMS4-201ENST00000413601 LCE3DQ9BYE3 92 aa3.44□□□□□ -1.86
LIMS4-201ENST00000413601 LCE3EQ5T5B0 92 aa3.24□□□□□ -1.89
LIMS4-201ENST00000413601 INE1O15225 51 aa3.15□□□□□ -1.91
LIMS4-201ENST00000413601 KRTAP21-2Q3LI59 83 aa2.94□□□□□ -1.94
LIMS4-201ENST00000413601 PHGR1C9JFL3 82 aa2.71□□□□□ -1.98
LIMS4-201ENST00000413601 PRM1P04553 51 aa2.48□□□□□ -2.01
LIMS4-201ENST00000413601 MUC19Q7Z5P9 8384 aa2.44□□□□□ -2.02
LIMS4-201ENST00000413601 KRTAP21-1Q3LI58 79 aa2.03□□□□□ -2.08
LIMS4-201ENST00000413601 MUC16Q8WXI7 14507 aa1.76□□□□□ -2.13
Retrieved 77 of 20,778 RNA–protein pairs in 54.7 ms