RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.64□□□□□ -1.99
VPS41-204ENST00000413141 CRCT1Q9UGL9 99 aa2.64□□□□□ -1.99
VPS41-204ENST00000413141 KRTAP10-12P60413 245 aa2.63□□□□□ -1.99
VPS41-204ENST00000413141 FCGBPQ9Y6R7 5405 aaPredicted RBP2.61□□□□□ -1.99
VPS41-204ENST00000413141 LCE3AQ5TA76 89 aa2.59□□□□□ -1.99
VPS41-204ENST00000413141 PP632Q6XCG6 107 aa2.58□□□□□ -2
VPS41-204ENST00000413141 LCE1AQ5T7P2 110 aa2.56□□□□□ -2
VPS41-204ENST00000413141 MACF1Q9UPN3 7388 aaKnown RBP2.53□□□□□ -2
VPS41-204ENST00000413141 KRTAP8-1Q8IUC2 63 aa2.53□□□□□ -2
VPS41-204ENST00000413141 KMT2DO14686 5537 aa2.52□□□□□ -2.01
VPS41-204ENST00000413141 KRTAP5-11Q6L8G4 156 aa2.51□□□□□ -2.01
VPS41-204ENST00000413141 KRTAP19-5Q3LI72 72 aa2.49□□□□□ -2.01
VPS41-204ENST00000413141 KRTAP12-3P60328 96 aa2.48□□□□□ -2.01
VPS41-204ENST00000413141 KRTAP19-7Q3SYF9 63 aa2.48□□□□□ -2.01
VPS41-204ENST00000413141 SYNE2Q8WXH0 6885 aaKnown RBP2.47□□□□□ -2.01
VPS41-204ENST00000413141 MT1EP04732 61 aa2.44□□□□□ -2.02
VPS41-204ENST00000413141 MT3P25713 68 aa2.42□□□□□ -2.02
VPS41-204ENST00000413141 KRTAP5-9P26371 169 aa2.41□□□□□ -2.02
VPS41-204ENST00000413141 SPRR2FQ96RM1 72 aa2.41□□□□□ -2.02
VPS41-204ENST00000413141 KRTAP6-3Q3LI67 103 aa2.38□□□□□ -2.03
VPS41-204ENST00000413141 LCE1EQ5T753 118 aa2.38□□□□□ -2.03
VPS41-204ENST00000413141 MT1LQ93083 61 aa2.38□□□□□ -2.03
VPS41-204ENST00000413141 KRTAP2-2Q9BYT5 123 aa2.38□□□□□ -2.03
VPS41-204ENST00000413141 MUC12Q9UKN1 5478 aa2.35□□□□□ -2.03
VPS41-204ENST00000413141 KRTAP19-3Q7Z4W3 81 aa2.34□□□□□ -2.03
VPS41-204ENST00000413141 MT1GP13640 62 aa2.31□□□□□ -2.04
VPS41-204ENST00000413141 LCE3CQ5T5A8 94 aa2.31□□□□□ -2.04
VPS41-204ENST00000413141 SPRR2EP22531 72 aa2.3□□□□□ -2.04
VPS41-204ENST00000413141 SPRR2BP35325 72 aa2.3□□□□□ -2.04
VPS41-204ENST00000413141 SPRR2AP35326 72 aa2.3□□□□□ -2.04
VPS41-204ENST00000413141 MT1MQ8N339 61 aa2.29□□□□□ -2.04
VPS41-204ENST00000413141 MDN1Q9NU22 5596 aa2.29□□□□□ -2.04
VPS41-204ENST00000413141 SPRR5A0A1B0GTR4 108 aa2.28□□□□□ -2.04
VPS41-204ENST00000413141 NDUFAF8A1L188 74 aa2.28□□□□□ -2.04
VPS41-204ENST00000413141 KRTAP5-1Q6L8H4 278 aa2.27□□□□□ -2.05
VPS41-204ENST00000413141 NEBP20929 6669 aa2.26□□□□□ -2.05
VPS41-204ENST00000413141 KRTAP4-3Q9BYR4 195 aa2.24□□□□□ -2.05
VPS41-204ENST00000413141 KRTAP5-4Q6L8H1 288 aa2.23□□□□□ -2.05
VPS41-204ENST00000413141 SPRR2DP22532 72 aa2.22□□□□□ -2.05
VPS41-204ENST00000413141 KRTAP9-6A8MVA2 160 aa2.2□□□□□ -2.06
VPS41-204ENST00000413141 KRTAP4-4Q9BYR3 166 aa2.19□□□□□ -2.06
VPS41-204ENST00000413141 DSTQ03001 7570 aaKnown RBP2.16□□□□□ -2.06
VPS41-204ENST00000413141 LUZP6Q538Z0 58 aa2.15□□□□□ -2.07
VPS41-204ENST00000413141 LCE1FQ5T754 118 aa2.13□□□□□ -2.07
VPS41-204ENST00000413141 KRTAP5-5Q701N2 237 aaPredicted RBP2.09□□□□□ -2.07
VPS41-204ENST00000413141 KRTAP2-3P0C7H8 128 aa2.07□□□□□ -2.08
VPS41-204ENST00000413141 KRTAP2-4Q9BYR9 128 aa2.07□□□□□ -2.08
VPS41-204ENST00000413141 KRTAP20-1Q3LI63 56 aa2.06□□□□□ -2.08
VPS41-204ENST00000413141 KRTAP2-1Q9BYU5 128 aa2.03□□□□□ -2.08
VPS41-204ENST00000413141 MT1AP04731 61 aa2.02□□□□□ -2.09
VPS41-204ENST00000413141 KRTAP6-1Q3LI64 71 aa2□□□□□ -2.09
VPS41-204ENST00000413141 SYNE1Q8NF91 8797 aaKnown RBP1.93□□□□□ -2.1
VPS41-204ENST00000413141 MT4P47944 62 aa1.92□□□□□ -2.1
VPS41-204ENST00000413141 KRTAP12-4P60329 112 aa1.92□□□□□ -2.1
VPS41-204ENST00000413141 OBSCNQ5VST9 7968 aa1.89□□□□□ -2.11
VPS41-204ENST00000413141 HMCN1Q96RW7 5635 aa1.88□□□□□ -2.11
VPS41-204ENST00000413141 KRTAP20-2Q3LI61 65 aa1.87□□□□□ -2.11
VPS41-204ENST00000413141 KRTAP5-2Q701N4 177 aa1.86□□□□□ -2.11
VPS41-204ENST00000413141 KRTAP6-2Q3LI66 62 aa1.85□□□□□ -2.11
VPS41-204ENST00000413141 LCE3EQ5T5B0 92 aa1.84□□□□□ -2.11
VPS41-204ENST00000413141 LCE3DQ9BYE3 92 aa1.72□□□□□ -2.13
VPS41-204ENST00000413141 INE1O15225 51 aa1.71□□□□□ -2.14
VPS41-204ENST00000413141 AHNAK2Q8IVF2 5795 aa1.67□□□□□ -2.14
VPS41-204ENST00000413141 GPR98Q8WXG9 6306 aa1.67□□□□□ -2.14
VPS41-204ENST00000413141 KRTAP5-8O75690 187 aa1.61□□□□□ -2.15
VPS41-204ENST00000413141 KRTAP5-10Q6L8G5 202 aa1.61□□□□□ -2.15
VPS41-204ENST00000413141 KRTAP5-7Q6L8G8 165 aa1.53□□□□□ -2.16
VPS41-204ENST00000413141 LCE1CQ5T751 118 aa1.52□□□□□ -2.17
VPS41-204ENST00000413141 LCE1BQ5T7P3 118 aa1.52□□□□□ -2.17
VPS41-204ENST00000413141 MUC5ACP98088 5654 aa1.5□□□□□ -2.17
VPS41-204ENST00000413141 PRM1P04553 51 aa1.44□□□□□ -2.18
VPS41-204ENST00000413141 MUC5BQ9HC84 5762 aaPredicted RBP1.36□□□□□ -2.19
VPS41-204ENST00000413141 KRTAP21-2Q3LI59 83 aa1.32□□□□□ -2.2
VPS41-204ENST00000413141 AHNAKQ09666 5890 aaKnown RBP1.32□□□□□ -2.2
VPS41-204ENST00000413141 MUC19Q7Z5P9 8384 aa1.21□□□□□ -2.21
VPS41-204ENST00000413141 PHGR1C9JFL3 82 aa1.13□□□□□ -2.23
VPS41-204ENST00000413141 KRTAP21-1Q3LI58 79 aa0.87□□□□□ -2.27
VPS41-204ENST00000413141 MUC16Q8WXI7 14507 aa0.69□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 101.3 ms