RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 KRTAP12-1P59990 96 aa2.08□□□□□ -2.08
SF3B1-202ENST00000409915 KRTAP12-2P59991 146 aa2.08□□□□□ -2.08
SF3B1-202ENST00000409915 MT1FP04733 61 aa2.07□□□□□ -2.08
SF3B1-202ENST00000409915 FSIP2Q5CZC0 6907 aa2.07□□□□□ -2.08
SF3B1-202ENST00000409915 SSPOA2VEC9 5147 aa2.06□□□□□ -2.08
SF3B1-202ENST00000409915 KRTAP5-4Q6L8H1 288 aa2.06□□□□□ -2.08
SF3B1-202ENST00000409915 PP632Q6XCG6 107 aa2.06□□□□□ -2.08
SF3B1-202ENST00000409915 KRTAP4-4Q9BYR3 166 aa2.06□□□□□ -2.08
SF3B1-202ENST00000409915 KRTAP10-10P60014 251 aa2.04□□□□□ -2.08
SF3B1-202ENST00000409915 A0A0D9SG42 100 aa2.02□□□□□ -2.09
SF3B1-202ENST00000409915 KRTAP5-9P26371 169 aa2.02□□□□□ -2.09
SF3B1-202ENST00000409915 CRCT1Q9UGL9 99 aa2.02□□□□□ -2.09
SF3B1-202ENST00000409915 M0QZ58 72 aa2.01□□□□□ -2.09
SF3B1-202ENST00000409915 FCGBPQ9Y6R7 5405 aaPredicted RBP1.98□□□□□ -2.09
SF3B1-202ENST00000409915 LCE3EQ5T5B0 92 aa1.97□□□□□ -2.09
SF3B1-202ENST00000409915 MT1BP07438 61 aa1.91□□□□□ -2.1
SF3B1-202ENST00000409915 SPRR2GQ9BYE4 73 aa1.91□□□□□ -2.1
SF3B1-202ENST00000409915 KRTAP19-6Q3LI70 58 aa1.9□□□□□ -2.11
SF3B1-202ENST00000409915 KRTAP19-8Q3LI54 63 aa1.89□□□□□ -2.11
SF3B1-202ENST00000409915 OBSCNQ5VST9 7968 aa1.87□□□□□ -2.11
SF3B1-202ENST00000409915 KRTAP4-3Q9BYR4 195 aa1.85□□□□□ -2.11
SF3B1-202ENST00000409915 LCE3AQ5TA76 89 aa1.84□□□□□ -2.11
SF3B1-202ENST00000409915 MACF1Q9UPN3 7388 aaKnown RBP1.82□□□□□ -2.12
SF3B1-202ENST00000409915 MT1XP80297 61 aa1.81□□□□□ -2.12
SF3B1-202ENST00000409915 SYNE2Q8WXH0 6885 aaKnown RBP1.81□□□□□ -2.12
SF3B1-202ENST00000409915 KMT2DO14686 5537 aa1.8□□□□□ -2.12
SF3B1-202ENST00000409915 MUC12Q9UKN1 5478 aa1.79□□□□□ -2.12
SF3B1-202ENST00000409915 KRTAP6-3Q3LI67 103 aa1.78□□□□□ -2.12
SF3B1-202ENST00000409915 MDN1Q9NU22 5596 aa1.77□□□□□ -2.13
SF3B1-202ENST00000409915 TNP1P09430 55 aa1.77□□□□□ -2.13
SF3B1-202ENST00000409915 LCE3DQ9BYE3 92 aa1.76□□□□□ -2.13
SF3B1-202ENST00000409915 KRTAP8-1Q8IUC2 63 aa1.71□□□□□ -2.14
SF3B1-202ENST00000409915 SPRR2FQ96RM1 72 aa1.7□□□□□ -2.14
SF3B1-202ENST00000409915 NEBP20929 6669 aa1.7□□□□□ -2.14
SF3B1-202ENST00000409915 KRTAP5-5Q701N2 237 aaPredicted RBP1.69□□□□□ -2.14
SF3B1-202ENST00000409915 KRTAP5-2Q701N4 177 aa1.68□□□□□ -2.14
SF3B1-202ENST00000409915 SPRR2EP22531 72 aa1.66□□□□□ -2.14
SF3B1-202ENST00000409915 SPRR2BP35325 72 aa1.66□□□□□ -2.14
SF3B1-202ENST00000409915 SPRR2AP35326 72 aa1.66□□□□□ -2.14
SF3B1-202ENST00000409915 KRTAP12-4P60329 112 aa1.66□□□□□ -2.14
SF3B1-202ENST00000409915 KRTAP20-1Q3LI63 56 aa1.62□□□□□ -2.15
SF3B1-202ENST00000409915 KRTAP19-7Q3SYF9 63 aa1.61□□□□□ -2.15
SF3B1-202ENST00000409915 KRTAP2-3P0C7H8 128 aa1.6□□□□□ -2.15
SF3B1-202ENST00000409915 SPRR2DP22532 72 aa1.6□□□□□ -2.15
SF3B1-202ENST00000409915 KRTAP2-4Q9BYR9 128 aa1.6□□□□□ -2.15
SF3B1-202ENST00000409915 KRTAP2-1Q9BYU5 128 aa1.6□□□□□ -2.15
SF3B1-202ENST00000409915 MT1EP04732 61 aa1.59□□□□□ -2.15
SF3B1-202ENST00000409915 KRTAP19-5Q3LI72 72 aa1.59□□□□□ -2.15
SF3B1-202ENST00000409915 KRTAP12-3P60328 96 aa1.57□□□□□ -2.16
SF3B1-202ENST00000409915 LCE1CQ5T751 118 aa1.57□□□□□ -2.16
SF3B1-202ENST00000409915 LCE1BQ5T7P3 118 aa1.57□□□□□ -2.16
SF3B1-202ENST00000409915 KRTAP19-3Q7Z4W3 81 aa1.55□□□□□ -2.16
SF3B1-202ENST00000409915 MT1LQ93083 61 aa1.53□□□□□ -2.16
SF3B1-202ENST00000409915 MT1MQ8N339 61 aa1.52□□□□□ -2.17
SF3B1-202ENST00000409915 MT1GP13640 62 aa1.5□□□□□ -2.17
SF3B1-202ENST00000409915 DSTQ03001 7570 aaKnown RBP1.5□□□□□ -2.17
SF3B1-202ENST00000409915 HMCN1Q96RW7 5635 aa1.45□□□□□ -2.18
SF3B1-202ENST00000409915 KRTAP5-8O75690 187 aa1.41□□□□□ -2.18
SF3B1-202ENST00000409915 MT4P47944 62 aa1.41□□□□□ -2.18
SF3B1-202ENST00000409915 AHNAK2Q8IVF2 5795 aa1.38□□□□□ -2.19
SF3B1-202ENST00000409915 GPR98Q8WXG9 6306 aa1.36□□□□□ -2.19
SF3B1-202ENST00000409915 SYNE1Q8NF91 8797 aaKnown RBP1.35□□□□□ -2.19
SF3B1-202ENST00000409915 KRTAP20-2Q3LI61 65 aa1.32□□□□□ -2.2
SF3B1-202ENST00000409915 KRTAP5-7Q6L8G8 165 aa1.32□□□□□ -2.2
SF3B1-202ENST00000409915 MUC19Q7Z5P9 8384 aa1.31□□□□□ -2.2
SF3B1-202ENST00000409915 MT1AP04731 61 aa1.3□□□□□ -2.2
SF3B1-202ENST00000409915 KRTAP6-1Q3LI64 71 aa1.3□□□□□ -2.2
SF3B1-202ENST00000409915 KRTAP5-10Q6L8G5 202 aa1.26□□□□□ -2.21
SF3B1-202ENST00000409915 PRM1P04553 51 aa1.25□□□□□ -2.21
SF3B1-202ENST00000409915 KRTAP6-2Q3LI66 62 aa1.23□□□□□ -2.21
SF3B1-202ENST00000409915 MUC5BQ9HC84 5762 aaPredicted RBP1.14□□□□□ -2.23
SF3B1-202ENST00000409915 KRTAP21-2Q3LI59 83 aa1.14□□□□□ -2.23
SF3B1-202ENST00000409915 AHNAKQ09666 5890 aaKnown RBP1.13□□□□□ -2.23
SF3B1-202ENST00000409915 MUC5ACP98088 5654 aa1.13□□□□□ -2.23
SF3B1-202ENST00000409915 KRTAP21-1Q3LI58 79 aa0.92□□□□□ -2.26
SF3B1-202ENST00000409915 PHGR1C9JFL3 82 aa0.76□□□□□ -2.29
SF3B1-202ENST00000409915 MUC16Q8WXI7 14507 aa0.59□□□□□ -2.31
Retrieved 77 of 20,778 RNA–protein pairs in 11.2 ms