RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 ANAPC13Q9BS18 74 aa5.74□□□□□ -1.49
CHMP3-203ENST00000409225 A0A0A0MQY5 61 aa5.73□□□□□ -1.49
CHMP3-203ENST00000409225 SERP2Q8N6R1 65 aa5.73□□□□□ -1.49
CHMP3-203ENST00000409225 CHKB-CPT1BH3BT56 60 aa5.71□□□□□ -1.5
CHMP3-203ENST00000409225 COX7CP15954 63 aa5.68□□□□□ -1.5
CHMP3-203ENST00000409225 SNURFQ9Y675 71 aa5.64□□□□□ -1.51
CHMP3-203ENST00000409225 CCDC179H3BU77 68 aa5.62□□□□□ -1.51
CHMP3-203ENST00000409225 C10orf95Q9H7T3 257 aa5.61□□□□□ -1.51
CHMP3-203ENST00000409225 SPINT4Q6UDR6 99 aa5.58□□□□□ -1.52
CHMP3-203ENST00000409225 LCE3AQ5TA76 89 aa5.55□□□□□ -1.52
CHMP3-203ENST00000409225 KRTAP12-4P60329 112 aa5.54□□□□□ -1.52
CHMP3-203ENST00000409225 KRTAP5-5Q701N2 237 aaPredicted RBP5.52□□□□□ -1.53
CHMP3-203ENST00000409225 H7BZZ5 65 aa5.49□□□□□ -1.53
CHMP3-203ENST00000409225 AHNAKQ09666 5890 aaKnown RBP5.48□□□□□ -1.53
CHMP3-203ENST00000409225 SPATA8Q6RVD6 105 aa5.47□□□□□ -1.53
CHMP3-203ENST00000409225 SYNE1Q8NF91 8797 aaKnown RBP5.46□□□□□ -1.54
CHMP3-203ENST00000409225 KRTAP12-1P59990 96 aa5.45□□□□□ -1.54
CHMP3-203ENST00000409225 SPANXA2-OT1Q8N9U9 137 aa5.43□□□□□ -1.54
CHMP3-203ENST00000409225 TMEM258P61165 79 aa5.38□□□□□ -1.55
CHMP3-203ENST00000409225 MUC5ACP98088 5654 aa5.37□□□□□ -1.55
CHMP3-203ENST00000409225 MUC5BQ9HC84 5762 aaPredicted RBP5.36□□□□□ -1.55
CHMP3-203ENST00000409225 TNP1P09430 55 aa5.35□□□□□ -1.55
CHMP3-203ENST00000409225 SERP1Q9Y6X1 66 aa5.34□□□□□ -1.55
CHMP3-203ENST00000409225 ATP5EP56381 51 aaPredicted RBP5.33□□□□□ -1.56
CHMP3-203ENST00000409225 SEC61GP60059 68 aa5.33□□□□□ -1.56
CHMP3-203ENST00000409225 KRTAP12-3P60328 96 aa5.31□□□□□ -1.56
CHMP3-203ENST00000409225 A0A1B0GU33 70 aa5.3□□□□□ -1.56
CHMP3-203ENST00000409225 COA5Q86WW8 74 aa5.29□□□□□ -1.56
CHMP3-203ENST00000409225 KRTAP5-8O75690 187 aa5.24□□□□□ -1.57
CHMP3-203ENST00000409225 KRTAP5-2Q701N4 177 aa5.17□□□□□ -1.58
CHMP3-203ENST00000409225 SMIM26A0A096LP01 95 aa5.15□□□□□ -1.59
CHMP3-203ENST00000409225 A8MU10 97 aa5.15□□□□□ -1.59
CHMP3-203ENST00000409225 RPS28P62857 69 aaKnown RBP5.12□□□□□ -1.59
CHMP3-203ENST00000409225 LINC01558Q9Y6Z2 57 aa5.02□□□□□ -1.61
CHMP3-203ENST00000409225 A0A1B0GU69 56 aa5□□□□□ -1.61
CHMP3-203ENST00000409225 KRTAP6-1Q3LI64 71 aa5□□□□□ -1.61
CHMP3-203ENST00000409225 Q1T7F1 81 aa4.99□□□□□ -1.61
CHMP3-203ENST00000409225 PRR15LQ9BU68 103 aa4.98□□□□□ -1.61
CHMP3-203ENST00000409225 V9GYY9 64 aa4.98□□□□□ -1.61
CHMP3-203ENST00000409225 MT1AP04731 61 aa4.97□□□□□ -1.61
CHMP3-203ENST00000409225 OBSCNQ5VST9 7968 aa4.96□□□□□ -1.62
CHMP3-203ENST00000409225 PSPHP1O15172 72 aa4.96□□□□□ -1.62
CHMP3-203ENST00000409225 KRTAP6-2Q3LI66 62 aa4.9□□□□□ -1.63
CHMP3-203ENST00000409225 LCE3CQ5T5A8 94 aa4.83□□□□□ -1.64
CHMP3-203ENST00000409225 KRTAP25-1Q3LHN0 102 aa4.82□□□□□ -1.64
CHMP3-203ENST00000409225 UQCR11O14957 56 aa4.81□□□□□ -1.64
CHMP3-203ENST00000409225 MT3P25713 68 aa4.8□□□□□ -1.64
CHMP3-203ENST00000409225 A6NED7 52 aa4.79□□□□□ -1.64
CHMP3-203ENST00000409225 MIR22HGQ0VDD5 57 aa4.76□□□□□ -1.65
CHMP3-203ENST00000409225 KRTAP5-1Q6L8H4 278 aa4.75□□□□□ -1.65
CHMP3-203ENST00000409225 PRAC1Q96KF2 57 aa4.75□□□□□ -1.65
CHMP3-203ENST00000409225 CDC42SE1Q9NRR8 79 aa4.66□□□□□ -1.66
CHMP3-203ENST00000409225 BRK1Q8WUW1 75 aa4.63□□□□□ -1.67
CHMP3-203ENST00000409225 KRTAP9-6A8MVA2 160 aa4.59□□□□□ -1.67
CHMP3-203ENST00000409225 K7ERS5 55 aa4.56□□□□□ -1.68
CHMP3-203ENST00000409225 NDUFAF8A1L188 74 aa4.53□□□□□ -1.68
CHMP3-203ENST00000409225 LCE1FQ5T754 118 aa4.43□□□□□ -1.7
CHMP3-203ENST00000409225 PRO0628Q9UI54 55 aa4.42□□□□□ -1.7
CHMP3-203ENST00000409225 PMAIP1Q13794 54 aa4.37□□□□□ -1.71
CHMP3-203ENST00000409225 ROMO1P60602 79 aa4.36□□□□□ -1.71
CHMP3-203ENST00000409225 LCE1EQ5T753 118 aa4.31□□□□□ -1.72
CHMP3-203ENST00000409225 KRTAP5-11Q6L8G4 156 aa4.19□□□□□ -1.74
CHMP3-203ENST00000409225 LCE1BQ5T7P3 118 aa4.18□□□□□ -1.74
CHMP3-203ENST00000409225 KTN1-AS1Q86SY8 53 aa4.12□□□□□ -1.75
CHMP3-203ENST00000409225 LCE1CQ5T751 118 aa4.01□□□□□ -1.77
CHMP3-203ENST00000409225 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.93□□□□□ -1.78
CHMP3-203ENST00000409225 LCE3EQ5T5B0 92 aa3.82□□□□□ -1.8
CHMP3-203ENST00000409225 PHGR1C9JFL3 82 aa3.7□□□□□ -1.82
CHMP3-203ENST00000409225 LCE3DQ9BYE3 92 aa3.36□□□□□ -1.87
CHMP3-203ENST00000409225 LUZP6Q538Z0 58 aa3.35□□□□□ -1.87
CHMP3-203ENST00000409225 KRTAP4-4Q9BYR3 166 aa3.3□□□□□ -1.88
CHMP3-203ENST00000409225 KRTAP21-2Q3LI59 83 aa3.29□□□□□ -1.88
CHMP3-203ENST00000409225 MUC19Q7Z5P9 8384 aa3.12□□□□□ -1.91
CHMP3-203ENST00000409225 KRTAP21-1Q3LI58 79 aa2.8□□□□□ -1.96
CHMP3-203ENST00000409225 INE1O15225 51 aa2.59□□□□□ -1.99
CHMP3-203ENST00000409225 PRM1P04553 51 aa2.28□□□□□ -2.04
CHMP3-203ENST00000409225 MUC16Q8WXI7 14507 aa2.23□□□□□ -2.05
Retrieved 77 of 20,778 RNA–protein pairs in 6.2 ms