RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 SPRR2AP35326 72 aa7.8□□□□□ -1.16
TPM1-208ENST00000404484 LCE1AQ5T7P2 110 aa7.75□□□□□ -1.17
TPM1-208ENST00000404484 KRTAP15-1Q3LI76 137 aa7.74□□□□□ -1.17
TPM1-208ENST00000404484 KRTAP20-1Q3LI63 56 aa7.73□□□□□ -1.17
TPM1-208ENST00000404484 KRTAP19-7Q3SYF9 63 aa7.73□□□□□ -1.17
TPM1-208ENST00000404484 MT1EP04732 61 aa7.63□□□□□ -1.19
TPM1-208ENST00000404484 KRTAP2-3P0C7H8 128 aa7.6□□□□□ -1.19
TPM1-208ENST00000404484 KRTAP2-4Q9BYR9 128 aa7.6□□□□□ -1.19
TPM1-208ENST00000404484 SPRR2DP22532 72 aa7.53□□□□□ -1.2
TPM1-208ENST00000404484 KRTAP19-4Q3LI73 84 aa7.51□□□□□ -1.21
TPM1-208ENST00000404484 MT1LQ93083 61 aa7.46□□□□□ -1.21
TPM1-208ENST00000404484 KRTAP2-2Q9BYT5 123 aa7.37□□□□□ -1.23
TPM1-208ENST00000404484 KRTAP2-1Q9BYU5 128 aa7.37□□□□□ -1.23
TPM1-208ENST00000404484 LCE3CQ5T5A8 94 aa7.37□□□□□ -1.23
TPM1-208ENST00000404484 SPRR5A0A1B0GTR4 108 aa7.35□□□□□ -1.23
TPM1-208ENST00000404484 KRTAP19-3Q7Z4W3 81 aa7.35□□□□□ -1.23
TPM1-208ENST00000404484 LCE5AQ5TCM9 118 aa7.32□□□□□ -1.24
TPM1-208ENST00000404484 LCE3BQ5TA77 95 aa7.31□□□□□ -1.24
TPM1-208ENST00000404484 MT1GP13640 62 aa7.3□□□□□ -1.24
TPM1-208ENST00000404484 DSTQ03001 7570 aaKnown RBP7.19□□□□□ -1.26
TPM1-208ENST00000404484 MT1MQ8N339 61 aa7.18□□□□□ -1.26
TPM1-208ENST00000404484 LUZP6Q538Z0 58 aa7.17□□□□□ -1.26
TPM1-208ENST00000404484 KRTAP4-7Q9BYR0 210 aa7.14□□□□□ -1.27
TPM1-208ENST00000404484 KRTAP4-3Q9BYR4 195 aa6.96□□□□□ -1.29
TPM1-208ENST00000404484 KRTAP9-6A8MVA2 160 aa6.89□□□□□ -1.31
TPM1-208ENST00000404484 NDUFAF8A1L188 74 aa6.87□□□□□ -1.31
TPM1-208ENST00000404484 KRTAP4-9Q9BYQ8 210 aa6.78□□□□□ -1.32
TPM1-208ENST00000404484 LOC100996750A0A140TA64 210 aa6.71□□□□□ -1.34
TPM1-208ENST00000404484 LCE4AQ5TA78 99 aa6.65□□□□□ -1.34
TPM1-208ENST00000404484 LCE1DQ5T752 114 aa6.63□□□□□ -1.35
TPM1-208ENST00000404484 KRTAP5-4Q6L8H1 288 aa6.61□□□□□ -1.35
TPM1-208ENST00000404484 MT4P47944 62 aa6.59□□□□□ -1.35
TPM1-208ENST00000404484 HMCN1Q96RW7 5635 aa6.55□□□□□ -1.36
TPM1-208ENST00000404484 KRTAP5-5Q701N2 237 aaPredicted RBP6.47□□□□□ -1.37
TPM1-208ENST00000404484 KRTAP4-6Q9BYQ5 205 aa6.45□□□□□ -1.38
TPM1-208ENST00000404484 GPR98Q8WXG9 6306 aa6.38□□□□□ -1.39
TPM1-208ENST00000404484 MT1AP04731 61 aa6.37□□□□□ -1.39
TPM1-208ENST00000404484 KRTAP6-1Q3LI64 71 aa6.26□□□□□ -1.41
TPM1-208ENST00000404484 AHNAK2Q8IVF2 5795 aa6.22□□□□□ -1.41
TPM1-208ENST00000404484 SYNE1Q8NF91 8797 aaKnown RBP6.22□□□□□ -1.41
TPM1-208ENST00000404484 KRTAP12-4P60329 112 aa6.21□□□□□ -1.42
TPM1-208ENST00000404484 KRTAP20-2Q3LI61 65 aa6.21□□□□□ -1.42
TPM1-208ENST00000404484 A0A0A0MQY5 61 aa6.12□□□□□ -1.43
TPM1-208ENST00000404484 KRTAP5-10Q6L8G5 202 aa6.06□□□□□ -1.44
TPM1-208ENST00000404484 KRTAP5-3Q6L8H2 238 aa6.04□□□□□ -1.44
TPM1-208ENST00000404484 KRTAP9-4Q9BYQ2 154 aa6.04□□□□□ -1.44
TPM1-208ENST00000404484 H3BS24 57 aa5.93□□□□□ -1.46
TPM1-208ENST00000404484 KRTAP5-2Q701N4 177 aa5.81□□□□□ -1.48
TPM1-208ENST00000404484 MT3P25713 68 aa5.8□□□□□ -1.48
TPM1-208ENST00000404484 KRTAP6-2Q3LI66 62 aa5.79□□□□□ -1.48
TPM1-208ENST00000404484 KRTAP5-7Q6L8G8 165 aa5.78□□□□□ -1.48
TPM1-208ENST00000404484 INE1O15225 51 aa5.76□□□□□ -1.49
TPM1-208ENST00000404484 KRTAP4-11Q9BYQ6 195 aa5.63□□□□□ -1.51
TPM1-208ENST00000404484 LCE3DQ9BYE3 92 aa5.55□□□□□ -1.52
TPM1-208ENST00000404484 OBSCNQ5VST9 7968 aa5.52□□□□□ -1.53
TPM1-208ENST00000404484 KRTAP5-8O75690 187 aa5.44□□□□□ -1.54
TPM1-208ENST00000404484 LCE3EQ5T5B0 92 aa5.39□□□□□ -1.55
TPM1-208ENST00000404484 KRTAP5-1Q6L8H4 278 aa5.19□□□□□ -1.58
TPM1-208ENST00000404484 MUC5BQ9HC84 5762 aaPredicted RBP5.11□□□□□ -1.59
TPM1-208ENST00000404484 KRTAP9-9Q9BYP9 154 aa5.1□□□□□ -1.59
TPM1-208ENST00000404484 MUC5ACP98088 5654 aa5.09□□□□□ -1.59
TPM1-208ENST00000404484 LCE1EQ5T753 118 aa5.05□□□□□ -1.6
TPM1-208ENST00000404484 AHNAKQ09666 5890 aaKnown RBP5.03□□□□□ -1.6
TPM1-208ENST00000404484 KRTAP4-12Q9BQ66 201 aa4.98□□□□□ -1.61
TPM1-208ENST00000404484 KRTAP4-2Q9BYR5 136 aa4.74□□□□□ -1.65
TPM1-208ENST00000404484 LCE1BQ5T7P3 118 aa4.74□□□□□ -1.65
TPM1-208ENST00000404484 LCE1CQ5T751 118 aa4.69□□□□□ -1.66
TPM1-208ENST00000404484 PRM1P04553 51 aa4.65□□□□□ -1.66
TPM1-208ENST00000404484 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.39□□□□□ -1.71
TPM1-208ENST00000404484 KRTAP5-11Q6L8G4 156 aa4.2□□□□□ -1.74
TPM1-208ENST00000404484 KRTAP21-2Q3LI59 83 aa4.1□□□□□ -1.75
TPM1-208ENST00000404484 LCE1FQ5T754 118 aa4.03□□□□□ -1.76
TPM1-208ENST00000404484 PHGR1C9JFL3 82 aa3.63□□□□□ -1.83
TPM1-208ENST00000404484 KRTAP4-4Q9BYR3 166 aa3.63□□□□□ -1.83
TPM1-208ENST00000404484 MUC19Q7Z5P9 8384 aa3.37□□□□□ -1.87
TPM1-208ENST00000404484 KRTAP21-1Q3LI58 79 aa2.84□□□□□ -1.95
TPM1-208ENST00000404484 MUC16Q8WXI7 14507 aa2.41□□□□□ -2.02
Retrieved 77 of 20,778 RNA–protein pairs in 9.5 ms